Wall clock time and date at job start Sun Mar 29 2020 22:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47139 * 2 1 4 4 C 1.37102 * 119.99732 * 95.17806 * 3 2 1 5 5 H 1.08006 * 119.99712 * 218.86303 * 4 3 2 6 6 C 1.38945 * 119.99809 * 38.87561 * 4 3 2 7 7 N 1.31405 * 120.00300 * 19.66245 * 6 4 3 8 8 Si 1.86807 * 119.99599 * 199.66995 * 6 4 3 9 9 H 1.48504 * 109.47042 * 59.99506 * 8 6 4 10 10 H 1.48499 * 109.46770 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47072 * 299.99406 * 8 6 4 12 12 C 1.34775 * 120.00094 * 275.18374 * 3 2 1 13 13 O 1.21290 * 120.00377 * 179.97438 * 12 3 2 14 14 C 1.50699 * 119.99884 * 0.02562 * 12 3 2 15 15 H 1.08995 * 115.56904 * 54.96672 * 14 12 3 16 16 C 1.53182 * 117.52082 * 200.74682 * 14 12 3 17 17 C 1.52143 * 117.52128 * 269.19135 * 14 12 3 18 18 C 1.54039 * 121.43995 * 3.49129 * 17 14 12 19 19 C 1.55184 * 101.83113 * 123.35448 * 18 17 14 20 20 O 1.44451 * 103.63151 * 36.32963 * 19 18 17 21 21 C 1.43995 * 107.05080 * 320.43011 * 20 19 18 22 22 H 1.08999 * 109.47167 * 60.00029 * 1 2 3 23 23 H 1.09000 * 109.47094 * 300.00142 * 1 2 3 24 24 H 1.08995 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47167 * 119.99970 * 2 1 3 26 26 H 1.09000 * 109.47094 * 239.99858 * 2 1 3 27 27 H 0.97007 * 119.99885 * 180.02562 * 7 6 4 28 28 H 1.09002 * 117.52356 * 214.84487 * 16 14 12 29 29 H 1.08998 * 117.52212 * 359.97438 * 16 14 12 30 30 H 1.09002 * 110.95748 * 241.49364 * 18 17 14 31 31 H 1.09006 * 110.95871 * 5.22025 * 18 17 14 32 32 H 1.09003 * 110.59124 * 277.79355 * 19 18 17 33 33 H 1.08999 * 110.59222 * 154.86488 * 19 18 17 34 34 H 1.08997 * 109.97203 * 266.94296 * 21 20 19 35 35 H 1.09000 * 109.97129 * 145.66381 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3479 1.9918 1.1825 5 1 2.1058 3.0327 1.3386 6 6 2.9934 1.2714 2.1800 7 7 3.6277 0.1599 1.8820 8 14 2.9593 1.8831 3.9448 9 1 1.5525 1.9638 4.4135 10 1 3.7155 0.9420 4.8094 11 1 3.5822 3.2292 4.0142 12 6 2.1436 2.0518 -1.1624 13 8 2.5474 3.1954 -1.1624 14 6 1.7807 1.3808 -2.4621 15 1 0.7726 0.9697 -2.5138 16 6 2.3749 1.9621 -3.7488 17 6 2.8826 0.6353 -3.2001 18 6 4.2972 0.4983 -2.6059 19 6 4.4843 -1.0420 -2.5816 20 8 3.8169 -1.4850 -3.7837 21 6 2.6216 -0.6936 -3.9191 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 4.0781 -0.3432 2.5785 28 1 1.7579 1.9325 -4.6468 29 1 3.0278 2.8299 -3.6549 30 1 5.0383 0.9710 -3.2505 31 1 4.3386 0.9120 -1.5983 32 1 4.0101 -1.4719 -1.6992 33 1 5.5428 -1.3002 -2.6134 34 1 1.7798 -1.2083 -3.4560 35 1 2.4131 -0.5117 -4.9734 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334611296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:25 Heat of formation + Delta-G solvation = -71.734335 kcal Electronic energy + Delta-G solvation = -18210.868415 eV Core-core repulsion = 15402.129339 eV Total energy + Delta-G solvation = -2808.739076 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41453 -39.70873 -37.17758 -36.43647 -33.94260 -31.28824 -31.14130 -28.58789 -27.32436 -24.71687 -23.78922 -23.52529 -21.08434 -19.89132 -18.72246 -17.75219 -17.41109 -17.12364 -16.66712 -16.05237 -15.93681 -15.36888 -14.80834 -14.56099 -14.37674 -13.82976 -13.59595 -13.46635 -13.31947 -13.16997 -12.87992 -12.66372 -12.40835 -12.29400 -12.11253 -11.98615 -11.81537 -11.34161 -11.03287 -10.79955 -10.59347 -10.27936 -9.42001 -8.34536 -6.08252 1.37017 1.39754 1.49251 1.91843 2.26685 2.69433 2.93595 2.98255 3.11068 3.48200 3.71724 3.87830 3.96564 4.17035 4.25948 4.36275 4.46307 4.55121 4.66088 4.75903 4.77868 4.80914 4.82189 4.89219 4.95534 5.02539 5.10271 5.19482 5.29130 5.44642 5.54885 5.83508 6.22202 6.55551 7.18739 7.47735 8.09633 8.68136 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.027715 B = 0.008697 C = 0.008155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.039788 B = 3218.640110 C = 3432.701111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.106 3.894 3 N -0.444 5.444 4 C -0.346 4.346 5 H 0.058 0.942 6 C 0.009 3.991 7 N -0.883 5.883 8 Si 0.977 3.023 9 H -0.264 1.264 10 H -0.271 1.271 11 H -0.280 1.280 12 C 0.477 3.523 13 O -0.633 6.633 14 C -0.166 4.166 15 H 0.140 0.860 16 C -0.122 4.122 17 C -0.139 4.139 18 C -0.124 4.124 19 C 0.061 3.939 20 O -0.388 6.388 21 C 0.090 3.910 22 H 0.055 0.945 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.273 0.727 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 -5.958 -8.201 10.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.018 4.018 3 N -0.161 5.161 4 C -0.474 4.474 5 H 0.076 0.924 6 C -0.194 4.194 7 N -0.520 5.520 8 Si 0.801 3.199 9 H -0.189 1.189 10 H -0.195 1.195 11 H -0.205 1.205 12 C 0.267 3.733 13 O -0.520 6.520 14 C -0.187 4.187 15 H 0.158 0.842 16 C -0.159 4.159 17 C -0.140 4.140 18 C -0.161 4.161 19 C -0.015 4.015 20 O -0.307 6.307 21 C 0.013 3.987 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.093 0.907 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.331 -5.767 -8.204 10.566 hybrid contribution 0.169 0.791 1.464 1.672 sum -3.162 -4.976 -6.740 8.955 Atomic orbital electron populations 1.22129 0.95414 1.02501 1.01342 1.21512 0.93878 0.83525 1.02850 1.43629 1.55482 1.12779 1.04251 1.19289 1.38778 0.96901 0.92439 0.92370 1.26041 0.93199 0.96620 1.03587 1.69977 1.29880 1.17271 1.34863 0.85261 0.78887 0.78013 0.77780 1.18925 1.19529 1.20536 1.20262 0.80751 0.86845 0.85480 1.90463 1.52719 1.21131 1.87736 1.22252 0.99723 1.05225 0.91495 0.84241 1.23000 1.02160 0.94728 0.95972 1.22256 0.94053 0.95630 1.02049 1.22529 0.95480 0.97809 1.00332 1.23444 0.98756 0.91792 0.87488 1.88842 1.37941 1.60177 1.43781 1.22688 0.87865 0.86645 1.01476 0.92601 0.94038 0.89693 0.90101 0.92090 0.91710 0.84108 0.90060 0.89828 0.93460 0.92752 0.87560 0.90735 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.32 10.14 71.98 0.73 -4.59 16 2 C 0.11 4.50 5.42 86.38 0.47 4.97 16 3 N -0.44 -22.69 2.52 -635.53 -1.60 -24.29 16 4 C -0.35 -19.73 8.88 84.04 0.75 -18.98 16 5 H 0.06 3.57 7.79 -2.91 -0.02 3.55 16 6 C 0.01 0.47 4.94 84.93 0.42 0.89 16 7 N -0.88 -46.95 11.53 21.66 0.25 -46.70 16 8 Si 0.98 42.41 29.60 68.60 2.03 44.44 16 9 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 10 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 C 0.48 23.81 5.92 87.66 0.52 24.32 16 13 O -0.63 -37.31 16.36 -3.06 -0.05 -37.36 16 14 C -0.17 -6.02 4.31 -11.76 -0.05 -6.07 16 15 H 0.14 4.26 6.76 -2.39 -0.02 4.24 16 16 C -0.12 -3.73 9.83 30.42 0.30 -3.43 16 17 C -0.14 -4.42 2.16 -52.24 -0.11 -4.54 16 18 C -0.12 -4.48 6.75 31.69 0.21 -4.27 16 19 C 0.06 1.96 7.73 72.73 0.56 2.52 16 20 O -0.39 -11.65 11.53 -148.98 -1.72 -13.37 16 21 C 0.09 2.29 7.50 72.09 0.54 2.83 16 22 H 0.05 1.74 6.75 -2.39 -0.02 1.73 16 23 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.08 3.85 5.63 -2.39 -0.01 3.84 16 26 H 0.06 2.40 6.85 -2.39 -0.02 2.38 16 27 H 0.27 13.62 8.31 -92.70 -0.77 12.85 16 28 H 0.14 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.08 2.92 7.83 -2.39 -0.02 2.90 16 30 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.05 2.19 6.93 -2.38 -0.02 2.17 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -68.31 288.42 4.32 -63.99 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 1.08 Total: 19.64 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 4.34 Total: -6.34 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -1.35 Total: -70.99 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -1.77 Total: -50.73 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -68.31 4.32 -63.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334611296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.746 kcal (2) G-P(sol) polarization free energy of solvation -68.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds