Wall clock time and date at job start Sun Mar 29 2020 22:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47230 * 2 1 4 4 C 1.37107 * 119.99765 * 95.00202 * 3 2 1 5 5 H 1.07997 * 120.00078 * 219.89549 * 4 3 2 6 6 C 1.38947 * 119.99988 * 39.89590 * 4 3 2 7 7 N 1.31411 * 120.00179 * 24.48795 * 6 4 3 8 8 Si 1.86805 * 120.00173 * 204.49109 * 6 4 3 9 9 H 1.48505 * 109.46763 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46864 * 240.00275 * 8 6 4 11 11 H 1.48493 * 109.46990 * 119.99739 * 8 6 4 12 12 C 1.34771 * 120.00561 * 275.00315 * 3 2 1 13 13 O 1.21291 * 120.00604 * 180.02562 * 12 3 2 14 14 C 1.50706 * 119.99693 * 359.97438 * 12 3 2 15 15 H 1.09002 * 115.56126 * 34.22916 * 14 12 3 16 16 C 1.53178 * 117.52008 * 248.37778 * 14 12 3 17 17 C 1.52126 * 117.52235 * 180.02562 * 14 12 3 18 18 C 1.54040 * 121.47157 * 356.56280 * 17 14 12 19 19 C 1.55180 * 101.82884 * 195.70882 * 18 17 14 20 20 O 1.44451 * 103.63689 * 36.33120 * 19 18 17 21 21 C 1.44000 * 107.04383 * 320.43283 * 20 19 18 22 22 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46719 * 299.99565 * 1 2 3 24 24 H 1.08998 * 109.46673 * 59.99488 * 1 2 3 25 25 H 1.08997 * 109.46469 * 239.99864 * 2 1 3 26 26 H 1.09005 * 109.47005 * 120.00452 * 2 1 3 27 27 H 0.97004 * 119.99917 * 5.62580 * 7 6 4 28 28 H 1.09000 * 117.52218 * 359.97438 * 16 14 12 29 29 H 1.09001 * 117.52136 * 145.15229 * 16 14 12 30 30 H 1.08999 * 110.96292 * 313.84636 * 18 17 14 31 31 H 1.09008 * 110.95111 * 77.57964 * 18 17 14 32 32 H 1.09007 * 110.59458 * 277.78903 * 19 18 17 33 33 H 1.09001 * 110.72002 * 154.93236 * 19 18 17 34 34 H 1.09006 * 109.96628 * 266.93387 * 21 20 19 35 35 H 1.08997 * 110.00453 * 145.68656 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3445 1.9929 1.1829 5 1 2.0872 3.0294 1.3437 6 6 3.0061 1.2794 2.1748 7 7 3.7340 0.2325 1.8567 8 14 2.8607 1.8081 3.9605 9 1 1.9890 3.0069 4.0524 10 1 4.2087 2.1337 4.4916 11 1 2.2683 0.7037 4.7570 12 6 2.1471 2.0505 -1.1626 13 8 2.5519 3.1939 -1.1627 14 6 1.7892 1.3779 -2.4629 15 1 0.9567 0.6757 -2.4157 16 6 2.9312 1.0591 -3.4327 17 6 1.9565 2.1852 -3.7414 18 6 2.3974 3.6608 -3.7088 19 6 2.0273 4.1350 -5.1392 20 8 0.8031 3.4246 -5.4275 21 6 0.9518 2.0945 -4.8960 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3632 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8763 0.0060 0.9243 28 1 3.9410 1.3363 -3.1302 29 1 2.8502 0.1468 -4.0237 30 1 1.8390 4.2181 -2.9566 31 1 3.4706 3.7432 -3.5362 32 1 2.8073 3.8584 -5.8487 33 1 1.8589 5.2118 -5.1571 34 1 1.3314 1.4254 -5.6682 35 1 -0.0073 1.7309 -4.5273 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334611297.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:27 Heat of formation + Delta-G solvation = -52.873655 kcal Electronic energy + Delta-G solvation = -17817.796473 eV Core-core repulsion = 15009.875257 eV Total energy + Delta-G solvation = -2807.921215 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.01132 -38.29178 -35.80782 -34.78297 -31.99006 -30.00917 -29.47313 -27.38228 -25.14444 -23.29527 -22.49303 -21.90833 -19.88552 -18.46346 -17.35090 -16.28963 -15.79683 -15.60203 -15.00422 -14.47605 -14.24728 -13.79096 -13.46897 -13.18524 -12.95769 -12.69548 -12.29784 -11.93916 -11.90049 -11.32118 -11.21275 -11.07657 -10.95188 -10.67605 -10.41084 -10.23294 -10.00140 -9.85843 -9.64186 -9.45597 -8.87762 -8.32219 -7.69703 -6.59635 -4.01014 3.28077 3.34671 3.50766 3.53399 4.02741 4.12499 4.27157 4.47302 4.86390 4.97005 5.04835 5.17424 5.29166 5.38221 5.59841 5.63774 5.72321 5.76432 5.76655 5.85930 5.91419 6.01426 6.06913 6.15166 6.25907 6.35216 6.39237 6.66725 6.69485 6.86098 6.97542 7.98056 8.10552 8.68871 8.94102 9.39395 9.90355 10.64823 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.038464 B = 0.006778 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.781536 B = 4130.086648 C = 4411.152974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.449 5.449 4 C -0.394 4.394 5 H 0.081 0.919 6 C 0.009 3.991 7 N -0.879 5.879 8 Si 1.078 2.922 9 H -0.284 1.284 10 H -0.286 1.286 11 H -0.282 1.282 12 C 0.486 3.514 13 O -0.569 6.569 14 C -0.157 4.157 15 H 0.113 0.887 16 C -0.140 4.140 17 C -0.142 4.142 18 C -0.100 4.100 19 C 0.043 3.957 20 O -0.381 6.381 21 C 0.087 3.913 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.091 0.909 27 H 0.274 0.726 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 -1.170 -9.395 10.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.032 4.032 3 N -0.168 5.168 4 C -0.522 4.522 5 H 0.098 0.902 6 C -0.198 4.198 7 N -0.513 5.513 8 Si 0.905 3.095 9 H -0.209 1.209 10 H -0.212 1.212 11 H -0.208 1.208 12 C 0.275 3.725 13 O -0.452 6.452 14 C -0.178 4.178 15 H 0.131 0.869 16 C -0.178 4.178 17 C -0.143 4.143 18 C -0.137 4.137 19 C -0.033 4.033 20 O -0.300 6.300 21 C 0.011 3.989 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.574 -0.938 -7.924 8.743 hybrid contribution -0.261 0.034 -1.442 1.466 sum -3.836 -0.904 -9.366 10.161 Atomic orbital electron populations 1.22164 0.97372 1.00575 1.01922 1.21551 0.93176 0.85938 1.02558 1.43528 1.56465 1.11718 1.05130 1.20252 1.40184 0.99637 0.92111 0.90165 1.26412 0.91886 0.95716 1.05814 1.70695 1.30692 1.28074 1.21849 0.83369 0.76659 0.75937 0.73557 1.20921 1.21206 1.20847 1.19455 0.81908 0.87550 0.83613 1.90493 1.49924 1.18378 1.86410 1.22359 1.01754 1.02769 0.90908 0.86901 1.22884 0.95375 0.98402 1.01101 1.22071 1.01041 0.94618 0.96544 1.22513 1.02644 0.92633 0.95951 1.23695 0.86479 0.97185 0.95969 1.88867 1.37259 1.24365 1.79555 1.22480 0.98352 0.85114 0.93003 0.92897 0.92068 0.93609 0.92883 0.89063 0.91520 0.88217 0.88320 0.88623 0.90262 0.92653 0.89257 0.92163 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.03 37.16 0.37 -2.50 16 2 C 0.09 1.94 4.80 -4.04 -0.02 1.92 16 3 N -0.45 -11.23 2.26 -114.81 -0.26 -11.49 16 4 C -0.39 -11.02 8.79 -14.93 -0.13 -11.15 16 5 H 0.08 2.40 7.84 -52.49 -0.41 1.98 16 6 C 0.01 0.23 4.79 -17.47 -0.08 0.15 16 7 N -0.88 -24.50 12.33 55.50 0.68 -23.82 16 8 Si 1.08 23.97 29.99 -169.99 -5.10 18.87 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 C 0.49 11.74 7.38 -10.98 -0.08 11.66 16 13 O -0.57 -15.46 13.68 5.55 0.08 -15.39 16 14 C -0.16 -2.89 4.68 -92.12 -0.43 -3.32 16 15 H 0.11 1.87 6.03 -51.93 -0.31 1.56 16 16 C -0.14 -2.21 10.00 -27.10 -0.27 -2.49 16 17 C -0.14 -2.34 2.43 -154.70 -0.38 -2.71 16 18 C -0.10 -1.72 5.16 -25.03 -0.13 -1.85 16 19 C 0.04 0.61 7.73 38.31 0.30 0.91 16 20 O -0.38 -6.02 11.53 -35.23 -0.41 -6.43 16 21 C 0.09 1.24 7.50 37.33 0.28 1.52 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.04 0.77 6.89 -51.93 -0.36 0.41 16 25 H 0.05 1.00 6.93 -51.93 -0.36 0.64 16 26 H 0.09 2.13 5.81 -51.93 -0.30 1.82 16 27 H 0.27 7.69 7.30 -40.82 -0.30 7.40 16 28 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 29 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.10 1.92 6.89 -51.93 -0.36 1.57 16 31 H 0.08 1.40 8.13 -51.92 -0.42 0.98 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 285.37 15.07 4.30 4.30 Total: -1.00 -31.26 285.37 -6.28 -37.53 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.00 Total: 4.28 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -0.57 Total: -7.87 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.42 Total: -35.31 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.33 Total: -21.81 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.10 Total: 18.87 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.26 -6.28 -37.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334611297.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.340 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds