Wall clock time and date at job start Sun Mar 29 2020 22:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47230 * 2 1 4 4 C 1.37107 * 119.99765 * 95.00202 * 3 2 1 5 5 H 1.07997 * 120.00078 * 219.89549 * 4 3 2 6 6 C 1.38947 * 119.99988 * 39.89590 * 4 3 2 7 7 N 1.31411 * 120.00179 * 24.48795 * 6 4 3 8 8 Si 1.86805 * 120.00173 * 204.49109 * 6 4 3 9 9 H 1.48505 * 109.46763 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46864 * 240.00275 * 8 6 4 11 11 H 1.48493 * 109.46990 * 119.99739 * 8 6 4 12 12 C 1.34771 * 120.00561 * 275.00315 * 3 2 1 13 13 O 1.21291 * 120.00604 * 180.02562 * 12 3 2 14 14 C 1.50706 * 119.99693 * 359.97438 * 12 3 2 15 15 H 1.09002 * 115.56126 * 34.22916 * 14 12 3 16 16 C 1.53178 * 117.52008 * 248.37778 * 14 12 3 17 17 C 1.52126 * 117.52235 * 180.02562 * 14 12 3 18 18 C 1.54040 * 121.47157 * 356.56280 * 17 14 12 19 19 C 1.55180 * 101.82884 * 195.70882 * 18 17 14 20 20 O 1.44451 * 103.63689 * 36.33120 * 19 18 17 21 21 C 1.44000 * 107.04383 * 320.43283 * 20 19 18 22 22 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46719 * 299.99565 * 1 2 3 24 24 H 1.08998 * 109.46673 * 59.99488 * 1 2 3 25 25 H 1.08997 * 109.46469 * 239.99864 * 2 1 3 26 26 H 1.09005 * 109.47005 * 120.00452 * 2 1 3 27 27 H 0.97004 * 119.99917 * 5.62580 * 7 6 4 28 28 H 1.09000 * 117.52218 * 359.97438 * 16 14 12 29 29 H 1.09001 * 117.52136 * 145.15229 * 16 14 12 30 30 H 1.08999 * 110.96292 * 313.84636 * 18 17 14 31 31 H 1.09008 * 110.95111 * 77.57964 * 18 17 14 32 32 H 1.09007 * 110.59458 * 277.78903 * 19 18 17 33 33 H 1.09001 * 110.72002 * 154.93236 * 19 18 17 34 34 H 1.09006 * 109.96628 * 266.93387 * 21 20 19 35 35 H 1.08997 * 110.00453 * 145.68656 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3445 1.9929 1.1829 5 1 2.0872 3.0294 1.3437 6 6 3.0061 1.2794 2.1748 7 7 3.7340 0.2325 1.8567 8 14 2.8607 1.8081 3.9605 9 1 1.9890 3.0069 4.0524 10 1 4.2087 2.1337 4.4916 11 1 2.2683 0.7037 4.7570 12 6 2.1471 2.0505 -1.1626 13 8 2.5519 3.1939 -1.1627 14 6 1.7892 1.3779 -2.4629 15 1 0.9567 0.6757 -2.4157 16 6 2.9312 1.0591 -3.4327 17 6 1.9565 2.1852 -3.7414 18 6 2.3974 3.6608 -3.7088 19 6 2.0273 4.1350 -5.1392 20 8 0.8031 3.4246 -5.4275 21 6 0.9518 2.0945 -4.8960 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3632 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8763 0.0060 0.9243 28 1 3.9410 1.3363 -3.1302 29 1 2.8502 0.1468 -4.0237 30 1 1.8390 4.2181 -2.9566 31 1 3.4706 3.7432 -3.5362 32 1 2.8073 3.8584 -5.8487 33 1 1.8589 5.2118 -5.1571 34 1 1.3314 1.4254 -5.6682 35 1 -0.0073 1.7309 -4.5273 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334611297.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:27 Heat of formation + Delta-G solvation = -73.108120 kcal Electronic energy + Delta-G solvation = -17818.673905 eV Core-core repulsion = 15009.875257 eV Total energy + Delta-G solvation = -2808.798648 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.47180 -39.88717 -37.42534 -36.48291 -33.96006 -31.32258 -31.15991 -28.64498 -26.99543 -24.94696 -23.79970 -23.44861 -21.38776 -20.07356 -19.23982 -17.89861 -17.14349 -16.96208 -16.45445 -16.14333 -15.93618 -15.51298 -15.14035 -14.72425 -14.40429 -14.13647 -13.71613 -13.51110 -13.27648 -13.08197 -12.77736 -12.66613 -12.47515 -12.06898 -11.97017 -11.90388 -11.76852 -11.39434 -10.97511 -10.88143 -10.59726 -10.20902 -9.70640 -8.74282 -6.17387 1.49636 1.51349 1.78645 1.83587 2.35839 2.65415 2.88138 2.91811 3.01418 3.47387 3.63871 3.84053 3.96280 4.09012 4.20456 4.26260 4.42466 4.43371 4.50941 4.62885 4.67733 4.70720 4.78068 4.82204 4.88398 4.97531 5.05338 5.07460 5.26125 5.33235 5.80876 5.83376 5.93121 6.68384 6.92902 7.39553 7.94738 8.48632 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.038464 B = 0.006778 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.781536 B = 4130.086648 C = 4411.152974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.093 3.907 3 N -0.465 5.465 4 C -0.420 4.420 5 H 0.046 0.954 6 C -0.023 4.023 7 N -0.890 5.890 8 Si 1.123 2.877 9 H -0.280 1.280 10 H -0.280 1.280 11 H -0.262 1.262 12 C 0.474 3.526 13 O -0.614 6.614 14 C -0.174 4.174 15 H 0.139 0.861 16 C -0.118 4.118 17 C -0.140 4.140 18 C -0.106 4.106 19 C 0.053 3.947 20 O -0.397 6.397 21 C 0.091 3.909 22 H 0.090 0.910 23 H 0.040 0.960 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.263 0.737 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.843 -2.820 -10.987 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.031 4.031 3 N -0.185 5.185 4 C -0.548 4.548 5 H 0.064 0.936 6 C -0.226 4.226 7 N -0.524 5.524 8 Si 0.943 3.057 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.187 1.187 12 C 0.264 3.736 13 O -0.500 6.500 14 C -0.195 4.195 15 H 0.156 0.844 16 C -0.156 4.156 17 C -0.140 4.140 18 C -0.144 4.144 19 C -0.023 4.023 20 O -0.317 6.317 21 C 0.014 3.986 22 H 0.109 0.891 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.162 0.838 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.411 -2.621 -9.534 10.827 hybrid contribution 0.032 0.600 -0.984 1.153 sum -4.379 -2.021 -10.518 11.571 Atomic orbital electron populations 1.22077 0.94623 1.02856 1.01472 1.21667 0.95382 0.83566 1.02438 1.43803 1.56878 1.13139 1.04694 1.20170 1.41466 0.98820 0.94315 0.93629 1.27705 0.90728 0.95084 1.09091 1.70804 1.31656 1.28798 1.21119 0.82817 0.77022 0.76361 0.69475 1.20502 1.20628 1.18698 1.20445 0.80630 0.87143 0.85392 1.90464 1.51652 1.20466 1.87456 1.22241 1.04304 1.04361 0.88550 0.84357 1.23017 0.93461 0.99792 0.99305 1.22226 1.01811 0.93971 0.96040 1.22419 1.01146 0.93604 0.97247 1.23707 0.86740 0.97871 0.93975 1.88850 1.37929 1.25298 1.79580 1.22636 0.98246 0.85017 0.92674 0.89142 0.94058 0.92523 0.90454 0.91568 0.92669 0.90192 0.83778 0.92578 0.91712 0.90090 0.88109 0.88825 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 10.03 71.98 0.72 -4.41 16 2 C 0.09 3.85 4.80 86.38 0.41 4.27 16 3 N -0.47 -23.87 2.26 -635.54 -1.44 -25.31 16 4 C -0.42 -24.46 8.79 84.04 0.74 -23.72 16 5 H 0.05 2.91 7.84 -2.91 -0.02 2.88 16 6 C -0.02 -1.29 4.79 84.93 0.41 -0.88 16 7 N -0.89 -50.28 12.33 21.66 0.27 -50.01 16 8 Si 1.12 48.85 29.99 68.60 2.06 50.90 16 9 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 12 C 0.47 23.45 7.38 87.66 0.65 24.09 16 13 O -0.61 -35.24 13.68 -3.06 -0.04 -35.28 16 14 C -0.17 -6.16 4.68 -11.77 -0.06 -6.22 16 15 H 0.14 4.15 6.03 -2.39 -0.01 4.14 16 16 C -0.12 -3.43 10.00 30.36 0.30 -3.13 16 17 C -0.14 -4.33 2.43 -52.31 -0.13 -4.46 16 18 C -0.11 -3.70 5.16 31.69 0.16 -3.53 16 19 C 0.05 1.41 7.73 72.73 0.56 1.97 16 20 O -0.40 -11.43 11.53 -148.98 -1.72 -13.15 16 21 C 0.09 2.24 7.50 72.09 0.54 2.78 16 22 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.06 1.77 6.89 -2.39 -0.02 1.76 16 25 H 0.08 2.78 6.93 -2.39 -0.02 2.77 16 26 H 0.07 3.09 5.81 -2.38 -0.01 3.08 16 27 H 0.26 15.10 7.30 -92.71 -0.68 14.43 16 28 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.06 2.38 6.89 -2.39 -0.02 2.36 16 31 H 0.06 2.37 8.13 -2.38 -0.02 2.35 16 32 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -71.75 285.37 4.61 -67.14 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 1.17 Total: 18.95 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 4.32 Total: -13.23 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -1.17 Total: -75.32 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -1.76 Total: -48.43 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.06 Total: 50.90 kcal Total: -71.75 4.61 -67.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334611297.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.972 kcal (2) G-P(sol) polarization free energy of solvation -71.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds