Wall clock time and date at job start Sun Mar 29 2020 22:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99447 * 2 1 4 4 O 1.20821 * 120.00599 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99420 * 179.97438 * 3 2 1 6 6 H 1.08997 * 115.57075 * 325.70997 * 5 3 2 7 7 C 1.53038 * 117.50177 * 111.41615 * 5 3 2 8 8 C 1.52817 * 117.50027 * 180.02562 * 5 3 2 9 9 C 1.53180 * 117.71566 * 144.90045 * 8 5 3 10 10 C 1.53351 * 108.76590 * 158.87325 * 9 8 5 11 11 N 1.46847 * 108.81221 * 51.32145 * 10 9 8 12 12 C 1.36937 * 120.39078 * 123.07181 * 11 10 9 13 13 H 1.08001 * 119.99336 * 331.82755 * 12 11 10 14 14 C 1.38806 * 120.00686 * 151.82122 * 12 11 10 15 15 N 1.31616 * 120.00300 * 159.31383 * 14 12 11 16 16 Si 1.86803 * 119.99895 * 339.31590 * 14 12 11 17 17 H 1.48502 * 109.47351 * 94.25187 * 16 14 12 18 18 H 1.48493 * 109.47436 * 214.25602 * 16 14 12 19 19 H 1.48497 * 109.46997 * 334.25616 * 16 14 12 20 20 C 1.46841 * 119.23239 * 303.09594 * 11 10 9 21 21 C 1.53191 * 117.71404 * 0.13829 * 8 5 3 22 22 H 1.08994 * 109.47365 * 60.00229 * 1 2 3 23 23 H 1.08998 * 109.46561 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47001 * 299.99801 * 1 2 3 25 25 H 1.09002 * 117.50456 * 0.02562 * 7 5 3 26 26 H 1.08990 * 117.53278 * 214.94040 * 7 5 3 27 27 H 1.08999 * 109.59303 * 39.09193 * 9 8 5 28 28 H 1.09006 * 109.58955 * 278.65934 * 9 8 5 29 29 H 1.09003 * 109.58224 * 171.11164 * 10 9 8 30 30 H 1.08999 * 109.58609 * 291.38660 * 10 9 8 31 31 H 0.97002 * 120.00020 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.58389 * 176.69624 * 20 11 10 33 33 H 1.09004 * 109.58179 * 297.09425 * 20 11 10 34 34 H 1.09002 * 109.58557 * 81.33567 * 21 8 5 35 35 H 1.09001 * 109.58756 * 320.90504 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0784 0.4885 0.5549 7 6 4.2466 1.8066 -1.2630 8 6 4.2000 2.6655 0.0012 9 6 5.5047 2.8535 0.7814 10 6 6.2273 4.0942 0.2427 11 7 5.2864 5.2215 0.2289 12 6 5.5780 6.3757 0.9056 13 1 6.2102 6.3434 1.7806 14 6 5.0613 7.5870 0.4670 15 7 4.9835 8.6076 1.2944 16 14 4.4763 7.7687 -1.2977 17 1 3.0158 7.5082 -1.3645 18 1 4.7553 9.1478 -1.7723 19 1 5.1927 6.7943 -2.1595 20 6 4.0286 5.0966 -0.5186 21 6 3.2614 3.8762 0.0044 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.6056 2.0998 -2.0944 26 1 5.2062 1.3705 -1.5400 27 1 6.1383 1.9762 0.6509 28 1 5.2813 2.9913 1.8394 29 1 7.0735 4.3327 0.8872 30 1 6.5823 3.8997 -0.7693 31 1 4.6220 9.4540 0.9880 32 1 3.4277 5.9947 -0.3753 33 1 4.2453 4.9651 -1.5788 34 1 2.9171 4.0689 1.0205 35 1 2.4065 3.6775 -0.6419 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334891180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:10 Heat of formation + Delta-G solvation = -29.433749 kcal Electronic energy + Delta-G solvation = -17723.370616 eV Core-core repulsion = 14916.465831 eV Total energy + Delta-G solvation = -2806.904785 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.74175 -38.64842 -36.38501 -35.23326 -31.86733 -30.43293 -29.18254 -27.91835 -24.36241 -24.06923 -22.86189 -21.37602 -20.29235 -18.46566 -17.59031 -16.75853 -16.38442 -16.01432 -15.27031 -14.46200 -14.13539 -13.86492 -13.68553 -13.29830 -12.90674 -12.77161 -12.39885 -12.20961 -11.96995 -11.87740 -11.62203 -10.91401 -10.83932 -10.71304 -10.55709 -10.27766 -10.12137 -9.72815 -9.54993 -9.39877 -9.32671 -8.53171 -6.88424 -5.89781 -3.24960 2.16550 2.66250 3.38748 3.52836 3.56617 3.86841 4.58947 4.71288 4.77965 4.86339 4.98985 5.05949 5.11540 5.13938 5.38679 5.39353 5.47063 5.72625 5.81317 5.92809 5.98743 6.14872 6.23496 6.31996 6.42448 6.45649 6.60918 6.75412 6.78675 6.89340 7.07777 7.84967 8.04193 8.38656 9.01358 9.78594 10.16940 11.26322 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.034734 B = 0.006991 C = 0.006428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.927806 B = 4004.083998 C = 4355.059635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.489 3.511 4 O -0.493 6.493 5 C -0.177 4.177 6 H 0.130 0.870 7 C -0.144 4.144 8 C -0.058 4.058 9 C -0.102 4.102 10 C 0.153 3.847 11 N -0.605 5.605 12 C -0.260 4.260 13 H 0.084 0.916 14 C 0.024 3.976 15 N -0.909 5.909 16 Si 0.881 3.119 17 H -0.288 1.288 18 H -0.304 1.304 19 H -0.270 1.270 20 C 0.129 3.871 21 C -0.103 4.103 22 H 0.061 0.939 23 H 0.098 0.902 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.262 0.738 32 H 0.072 0.928 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 -17.797 -4.197 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.333 3.667 4 O -0.380 6.380 5 C -0.196 4.196 6 H 0.148 0.852 7 C -0.181 4.181 8 C -0.059 4.059 9 C -0.141 4.141 10 C 0.027 3.973 11 N -0.329 5.329 12 C -0.388 4.388 13 H 0.102 0.898 14 C -0.175 4.175 15 N -0.552 5.552 16 Si 0.712 3.288 17 H -0.216 1.216 18 H -0.232 1.232 19 H -0.195 1.195 20 C 0.003 3.997 21 C -0.142 4.142 22 H 0.080 0.920 23 H 0.116 0.884 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.804 -17.303 -4.164 18.434 hybrid contribution -0.713 0.086 -0.915 1.163 sum -5.517 -17.217 -5.078 18.779 Atomic orbital electron populations 1.23225 0.76690 1.03342 1.02582 1.86499 1.23098 1.33918 1.84384 1.22868 0.90695 0.81038 0.72114 1.90666 1.66962 1.35577 1.44826 1.21950 0.87654 1.02822 1.07212 0.85197 1.23127 1.01479 1.02539 0.90986 1.21678 0.97494 0.88874 0.97833 1.21774 0.93205 0.99387 0.99720 1.20859 0.92043 0.86498 0.97914 1.44321 1.15527 1.13502 1.59531 1.18931 1.30560 0.83157 1.06195 0.89807 1.25280 0.99247 0.95366 0.97607 1.69842 1.47946 1.03291 1.34150 0.86940 0.77988 0.76045 0.87816 1.21628 1.23238 1.19498 1.21378 0.87813 0.96638 0.93859 1.21980 0.96310 0.92884 1.02988 0.92018 0.88360 0.91902 0.88436 0.87421 0.92326 0.91104 0.91580 0.95777 0.92839 0.91027 0.95793 0.91303 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.62 10.57 -39.26 -0.41 -5.04 16 3 C 0.49 7.27 7.72 36.01 0.28 7.55 16 4 O -0.49 -8.69 12.80 -18.75 -0.24 -8.93 16 5 C -0.18 -2.41 6.03 -91.84 -0.55 -2.97 16 6 H 0.13 1.48 8.14 -51.93 -0.42 1.05 16 7 C -0.14 -1.92 9.65 -26.76 -0.26 -2.18 16 8 C -0.06 -0.95 1.94 -154.46 -0.30 -1.25 16 9 C -0.10 -1.64 5.83 -26.46 -0.15 -1.79 16 10 C 0.15 2.98 6.52 -3.67 -0.02 2.96 16 11 N -0.61 -14.67 2.71 -172.26 -0.47 -15.14 16 12 C -0.26 -7.40 10.00 -15.06 -0.15 -7.55 16 13 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 14 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 15 N -0.91 -28.42 13.97 55.49 0.78 -27.64 16 16 Si 0.88 23.02 24.40 -169.99 -4.15 18.87 16 17 H -0.29 -7.38 6.66 56.52 0.38 -7.00 16 18 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 19 H -0.27 -6.89 6.65 56.52 0.38 -6.51 16 20 C 0.13 2.95 4.23 -3.68 -0.02 2.94 16 21 C -0.10 -2.04 4.46 -26.45 -0.12 -2.16 16 22 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 23 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 25 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.27 7.92 -51.93 -0.41 0.86 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 32 H 0.07 1.82 4.31 -51.93 -0.22 1.60 16 33 H 0.02 0.54 7.27 -51.93 -0.38 0.16 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.08 1.58 5.70 -51.93 -0.30 1.28 16 LS Contribution 279.94 15.07 4.22 4.22 Total: -1.00 -32.57 279.94 -5.74 -38.30 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -5.14 Total: -2.21 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.32 Total: -2.43 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.31 Total: -42.78 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.65 Total: -13.96 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.15 Total: 18.87 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.57 -5.74 -38.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334891180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.869 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds