Wall clock time and date at job start Sun Mar 29 2020 22:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99447 * 2 1 4 4 O 1.20821 * 120.00599 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99420 * 179.97438 * 3 2 1 6 6 H 1.08997 * 115.57075 * 325.70997 * 5 3 2 7 7 C 1.53038 * 117.50177 * 111.41615 * 5 3 2 8 8 C 1.52817 * 117.50027 * 180.02562 * 5 3 2 9 9 C 1.53180 * 117.71566 * 144.90045 * 8 5 3 10 10 C 1.53351 * 108.76590 * 158.87325 * 9 8 5 11 11 N 1.46847 * 108.81221 * 51.32145 * 10 9 8 12 12 C 1.36937 * 120.39078 * 123.07181 * 11 10 9 13 13 H 1.08001 * 119.99336 * 331.82755 * 12 11 10 14 14 C 1.38806 * 120.00686 * 151.82122 * 12 11 10 15 15 N 1.31616 * 120.00300 * 159.31383 * 14 12 11 16 16 Si 1.86803 * 119.99895 * 339.31590 * 14 12 11 17 17 H 1.48502 * 109.47351 * 94.25187 * 16 14 12 18 18 H 1.48493 * 109.47436 * 214.25602 * 16 14 12 19 19 H 1.48497 * 109.46997 * 334.25616 * 16 14 12 20 20 C 1.46841 * 119.23239 * 303.09594 * 11 10 9 21 21 C 1.53191 * 117.71404 * 0.13829 * 8 5 3 22 22 H 1.08994 * 109.47365 * 60.00229 * 1 2 3 23 23 H 1.08998 * 109.46561 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47001 * 299.99801 * 1 2 3 25 25 H 1.09002 * 117.50456 * 0.02562 * 7 5 3 26 26 H 1.08990 * 117.53278 * 214.94040 * 7 5 3 27 27 H 1.08999 * 109.59303 * 39.09193 * 9 8 5 28 28 H 1.09006 * 109.58955 * 278.65934 * 9 8 5 29 29 H 1.09003 * 109.58224 * 171.11164 * 10 9 8 30 30 H 1.08999 * 109.58609 * 291.38660 * 10 9 8 31 31 H 0.97002 * 120.00020 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.58389 * 176.69624 * 20 11 10 33 33 H 1.09004 * 109.58179 * 297.09425 * 20 11 10 34 34 H 1.09002 * 109.58557 * 81.33567 * 21 8 5 35 35 H 1.09001 * 109.58756 * 320.90504 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0784 0.4885 0.5549 7 6 4.2466 1.8066 -1.2630 8 6 4.2000 2.6655 0.0012 9 6 5.5047 2.8535 0.7814 10 6 6.2273 4.0942 0.2427 11 7 5.2864 5.2215 0.2289 12 6 5.5780 6.3757 0.9056 13 1 6.2102 6.3434 1.7806 14 6 5.0613 7.5870 0.4670 15 7 4.9835 8.6076 1.2944 16 14 4.4763 7.7687 -1.2977 17 1 3.0158 7.5082 -1.3645 18 1 4.7553 9.1478 -1.7723 19 1 5.1927 6.7943 -2.1595 20 6 4.0286 5.0966 -0.5186 21 6 3.2614 3.8762 0.0044 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.6056 2.0998 -2.0944 26 1 5.2062 1.3705 -1.5400 27 1 6.1383 1.9762 0.6509 28 1 5.2813 2.9913 1.8394 29 1 7.0735 4.3327 0.8872 30 1 6.5823 3.8997 -0.7693 31 1 4.6220 9.4540 0.9880 32 1 3.4277 5.9947 -0.3753 33 1 4.2453 4.9651 -1.5788 34 1 2.9171 4.0689 1.0205 35 1 2.4065 3.6775 -0.6419 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334891180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:09 Heat of formation + Delta-G solvation = -50.715468 kcal Electronic energy + Delta-G solvation = -17724.293461 eV Core-core repulsion = 14916.465831 eV Total energy + Delta-G solvation = -2807.827629 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.88358 -39.93153 -37.65650 -36.75360 -33.93305 -32.02132 -30.77729 -28.88888 -26.11183 -25.22143 -24.47269 -23.00090 -21.44582 -19.98186 -18.70022 -18.53216 -17.47147 -17.26948 -17.16230 -15.94379 -15.66646 -15.35665 -15.12157 -14.57013 -14.39744 -14.19601 -14.15005 -13.70973 -13.29014 -13.23835 -12.88825 -12.58689 -12.30132 -12.23819 -12.09148 -11.80418 -11.60800 -11.47625 -11.16086 -10.86953 -10.84311 -10.56699 -8.87210 -8.17193 -5.47432 1.04464 1.29698 1.38047 1.48327 1.69319 2.41736 2.74640 3.05602 3.36765 3.60048 3.73579 3.80091 4.01753 4.10179 4.29932 4.31232 4.40178 4.47110 4.60787 4.68429 4.74141 4.81008 4.85589 4.94018 5.00360 5.05416 5.17235 5.22914 5.28051 5.51339 5.53860 5.89115 6.13465 6.75905 6.94623 7.64915 8.05870 9.02934 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.034734 B = 0.006991 C = 0.006428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.927806 B = 4004.083998 C = 4355.059635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.486 3.514 4 O -0.531 6.531 5 C -0.161 4.161 6 H 0.163 0.837 7 C -0.121 4.121 8 C -0.092 4.092 9 C -0.088 4.088 10 C 0.144 3.856 11 N -0.620 5.620 12 C -0.247 4.247 13 H 0.053 0.947 14 C -0.036 4.036 15 N -0.958 5.958 16 Si 0.944 3.056 17 H -0.285 1.285 18 H -0.309 1.309 19 H -0.255 1.255 20 C 0.126 3.874 21 C -0.090 4.090 22 H 0.060 0.940 23 H 0.135 0.865 24 H 0.057 0.943 25 H 0.095 0.905 26 H 0.143 0.857 27 H 0.106 0.894 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.260 0.740 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 -21.274 -5.980 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.332 3.668 4 O -0.421 6.421 5 C -0.179 4.179 6 H 0.180 0.820 7 C -0.157 4.157 8 C -0.092 4.092 9 C -0.126 4.126 10 C 0.020 3.980 11 N -0.345 5.345 12 C -0.377 4.377 13 H 0.071 0.929 14 C -0.231 4.231 15 N -0.605 5.605 16 Si 0.774 3.226 17 H -0.213 1.213 18 H -0.238 1.238 19 H -0.179 1.179 20 C 0.001 3.999 21 C -0.129 4.129 22 H 0.078 0.922 23 H 0.153 0.847 24 H 0.075 0.925 25 H 0.113 0.887 26 H 0.161 0.839 27 H 0.124 0.876 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.538 -20.858 -5.966 22.164 hybrid contribution -0.843 1.053 -0.281 1.378 sum -5.381 -19.806 -6.247 21.453 Atomic orbital electron populations 1.23533 0.74977 1.05693 1.02290 1.86485 1.24760 1.32587 1.83718 1.23204 0.91397 0.81065 0.71180 1.90658 1.67867 1.36901 1.46633 1.22040 0.87005 1.01245 1.07655 0.81972 1.23294 1.02831 0.99837 0.89776 1.21464 0.97318 0.88858 1.01584 1.21611 0.93510 0.99246 0.98283 1.21126 0.91468 0.86200 0.99199 1.44468 1.17104 1.13443 1.59444 1.18920 1.28621 0.84907 1.05230 0.92901 1.25904 1.00706 0.95290 1.01163 1.69971 1.50609 1.03974 1.35927 0.85913 0.77763 0.75763 0.83179 1.21281 1.23760 1.17932 1.21365 0.87264 0.96819 0.94419 1.21711 0.96829 0.93563 1.00757 0.92155 0.84697 0.92453 0.88654 0.83925 0.87606 0.92977 0.92146 0.93655 0.93067 0.94264 0.94537 0.94525 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.36 -8.08 10.57 -51.43 -0.54 -8.63 16 3 C 0.49 13.24 7.72 71.24 0.55 13.79 16 4 O -0.53 -18.21 12.80 21.98 0.28 -17.92 16 5 C -0.16 -3.70 6.03 -11.59 -0.07 -3.77 16 6 H 0.16 2.74 8.14 -2.39 -0.02 2.72 16 7 C -0.12 -2.61 9.65 30.57 0.29 -2.31 16 8 C -0.09 -2.71 1.94 -52.15 -0.10 -2.82 16 9 C -0.09 -2.55 5.83 30.77 0.18 -2.37 16 10 C 0.14 5.33 6.52 86.43 0.56 5.90 16 11 N -0.62 -29.92 2.71 -698.89 -1.89 -31.81 16 12 C -0.25 -14.44 10.00 84.03 0.84 -13.60 16 13 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 14 C -0.04 -2.19 5.23 84.86 0.44 -1.75 16 15 N -0.96 -62.29 13.97 21.65 0.30 -61.99 16 16 Si 0.94 48.65 24.40 68.60 1.67 50.33 16 17 H -0.29 -14.38 6.66 99.48 0.66 -13.72 16 18 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 19 H -0.26 -12.36 6.65 99.48 0.66 -11.70 16 20 C 0.13 5.74 4.23 86.43 0.37 6.11 16 21 C -0.09 -3.52 4.46 30.78 0.14 -3.38 16 22 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 23 H 0.13 1.24 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 25 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.11 2.12 8.10 -2.39 -0.02 2.10 16 28 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.06 2.26 7.92 -2.39 -0.02 2.24 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 32 H 0.04 2.02 4.31 -2.39 -0.01 2.01 16 33 H 0.04 1.57 7.27 -2.39 -0.02 1.55 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 3.19 5.70 -2.39 -0.01 3.17 16 Total: -1.00 -73.72 279.94 5.21 -68.52 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 0.98 Total: 4.05 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 4.40 Total: -2.54 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -1.59 Total: -93.80 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.26 Total: -26.55 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 1.67 Total: 50.33 kcal Total: -73.72 5.21 -68.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334891180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.800 kcal (2) G-P(sol) polarization free energy of solvation -73.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds