Wall clock time and date at job start Sun Mar 29 2020 22:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.42062 * 2 1 4 4 O 1.44425 * 110.37396 * 122.31751 * 2 1 3 5 5 C 1.44425 * 105.27519 * 159.34241 * 4 2 1 6 6 C 1.54479 * 104.80479 * 319.48695 * 5 4 2 7 7 C 1.54483 * 110.37036 * 237.69594 * 2 1 3 8 8 H 1.08995 * 110.63227 * 335.88580 * 7 2 1 9 9 C 1.50702 * 110.51156 * 98.54560 * 7 2 1 10 10 O 1.21288 * 119.99889 * 356.09150 * 9 7 2 11 11 N 1.34774 * 119.99905 * 175.81782 * 9 7 2 12 12 C 1.37098 * 119.99975 * 179.97438 * 11 9 7 13 13 H 1.08002 * 120.00397 * 222.18353 * 12 11 9 14 14 C 1.38947 * 119.99884 * 42.18672 * 12 11 9 15 15 N 1.31417 * 120.00240 * 18.52146 * 14 12 11 16 16 Si 1.86805 * 120.00057 * 198.52074 * 14 12 11 17 17 H 1.48495 * 109.47115 * 59.99723 * 16 14 12 18 18 H 1.48505 * 109.47081 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46810 * 299.99724 * 16 14 12 20 20 C 1.46501 * 120.00194 * 359.97438 * 11 9 7 21 21 C 1.53002 * 117.50215 * 189.13349 * 20 11 9 22 22 C 1.52999 * 117.49966 * 120.51015 * 20 11 9 23 23 H 1.09008 * 109.47167 * 182.30271 * 1 2 3 24 24 H 1.08996 * 109.47369 * 302.30189 * 1 2 3 25 25 H 1.09000 * 109.47579 * 62.30856 * 1 2 3 26 26 H 1.09001 * 110.37029 * 200.65365 * 5 4 2 27 27 H 1.09001 * 110.36732 * 78.31903 * 5 4 2 28 28 H 1.09003 * 110.50634 * 265.33096 * 6 5 4 29 29 H 1.09000 * 110.62616 * 142.68430 * 6 5 4 30 30 H 0.97003 * 120.00209 * 174.58684 * 15 14 12 31 31 H 1.08998 * 115.54901 * 334.83986 * 20 11 9 32 32 H 1.09006 * 117.49441 * 359.97438 * 21 20 11 33 33 H 1.09001 * 117.49974 * 145.01571 * 21 20 11 34 34 H 1.09000 * 117.49992 * 214.97812 * 22 20 11 35 35 H 1.09002 * 117.49601 * 0.02562 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0214 0.0000 4 8 2.0328 -0.7238 1.1442 5 6 3.3873 -1.0872 0.7993 6 6 3.3178 -1.5056 -0.6861 7 6 2.0677 -0.7739 -1.2241 8 1 1.3286 -1.4918 -1.5796 9 6 2.4481 0.1803 -2.3267 10 8 2.2444 1.3689 -2.1972 11 7 3.0199 -0.2865 -3.4544 12 6 3.3655 0.5815 -4.4577 13 1 3.1722 0.3208 -5.4878 14 6 3.9645 1.7967 -4.1493 15 7 4.5281 1.9723 -2.9752 16 14 3.9687 3.1810 -5.4037 17 1 2.5698 3.5462 -5.7425 18 1 4.6655 4.3625 -4.8347 19 1 4.6749 2.7342 -6.6314 20 6 3.2720 -1.7214 -3.6081 21 6 4.1116 -2.1668 -4.8071 22 6 2.6052 -2.4336 -4.7867 23 1 -0.3634 -1.0269 0.0413 24 1 -0.3634 0.5491 0.8686 25 1 -0.3634 0.4776 -0.9099 26 1 3.7242 -1.9224 1.4134 27 1 4.0524 -0.2324 0.9220 28 1 3.1956 -2.5852 -0.7734 29 1 4.2106 -1.1789 -1.2193 30 1 5.0141 2.7907 -2.7880 31 1 3.3835 -2.2812 -2.6795 32 1 4.4760 -1.3921 -5.4819 33 1 4.7758 -3.0197 -4.6674 34 1 2.2784 -3.4622 -4.6336 35 1 1.9792 -1.8344 -5.4479 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335103421.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:01 Heat of formation + Delta-G solvation = -40.464305 kcal Electronic energy + Delta-G solvation = -18294.256466 eV Core-core repulsion = 15486.873360 eV Total energy + Delta-G solvation = -2807.383106 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.66731 -37.82208 -35.96925 -32.87888 -31.93970 -31.14492 -30.49474 -26.26182 -24.63206 -22.20347 -21.65351 -21.39293 -20.51673 -19.10661 -16.69773 -16.05949 -15.50058 -15.10761 -14.93267 -14.62917 -13.94017 -13.77266 -13.12991 -12.97332 -12.91668 -11.94910 -11.86464 -11.77313 -11.39349 -11.07845 -10.92725 -10.83599 -10.76782 -10.66488 -10.32158 -10.25187 -10.19399 -9.96684 -9.72097 -9.24556 -8.72304 -7.97166 -7.02207 -6.11764 -3.85996 3.29255 3.36569 3.39691 4.05968 4.24510 4.35092 4.75596 4.78985 5.13718 5.18954 5.34008 5.42540 5.52428 5.64623 5.76693 5.80016 5.80239 5.85084 5.96064 6.04910 6.17011 6.21923 6.22707 6.29610 6.46573 6.48624 6.54536 6.68629 6.74966 6.93263 7.30892 7.60292 8.25330 9.05007 9.14799 9.66060 10.28844 10.97051 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.010320 C = 0.008367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.935417 B = 2712.627027 C = 3345.507507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.086 3.914 3 H 0.089 0.911 4 O -0.383 6.383 5 C 0.050 3.950 6 C -0.146 4.146 7 C -0.132 4.132 8 H 0.089 0.911 9 C 0.488 3.512 10 O -0.528 6.528 11 N -0.425 5.425 12 C -0.350 4.350 13 H 0.077 0.923 14 C 0.073 3.927 15 N -0.830 5.830 16 Si 0.913 3.087 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.279 1.279 20 C 0.067 3.933 21 C -0.177 4.177 22 C -0.208 4.208 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.264 0.736 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.092 -8.106 2.692 8.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.028 3.972 3 H 0.107 0.893 4 O -0.303 6.303 5 C -0.027 4.027 6 C -0.184 4.184 7 C -0.154 4.154 8 H 0.107 0.893 9 C 0.275 3.725 10 O -0.405 6.405 11 N -0.145 5.145 12 C -0.477 4.477 13 H 0.095 0.905 14 C -0.138 4.138 15 N -0.463 5.463 16 Si 0.740 3.260 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.204 1.204 20 C -0.039 4.039 21 C -0.215 4.215 22 C -0.247 4.247 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.268 -7.334 3.116 8.285 hybrid contribution 0.345 0.534 -0.881 1.087 sum -1.923 -6.800 2.235 7.412 Atomic orbital electron populations 1.21731 0.93665 1.01820 1.02349 1.22891 0.94719 0.96582 0.82968 0.89329 1.89017 1.27056 1.75103 1.39099 1.23318 0.84936 0.99549 0.94932 1.23009 0.99225 0.99840 0.96312 1.22643 0.97883 0.98301 0.96601 0.89306 1.19452 0.81031 0.88328 0.83674 1.90519 1.54960 1.16308 1.78733 1.42721 1.53012 1.02276 1.16495 1.18816 1.42747 0.98472 0.87647 0.90548 1.25191 0.93860 0.98838 0.95886 1.69817 1.28442 1.26342 1.21729 0.86271 0.78389 0.81091 0.80236 1.20005 1.21203 1.20448 1.21977 1.02985 0.86274 0.92668 1.23079 0.92807 1.02513 1.03070 1.23285 0.96135 1.00395 1.04922 0.92553 0.92414 0.90926 0.89740 0.92222 0.91073 0.89258 0.92583 0.87057 0.87520 0.89899 0.89872 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.52 37.16 0.35 -1.92 16 2 C 0.09 1.66 3.25 -25.95 -0.08 1.58 16 3 H 0.09 1.99 6.96 -51.93 -0.36 1.63 16 4 O -0.38 -7.06 11.34 -35.23 -0.40 -7.46 16 5 C 0.05 0.82 7.63 37.93 0.29 1.11 16 6 C -0.15 -2.52 4.73 -25.16 -0.12 -2.64 16 7 C -0.13 -2.60 2.29 -90.20 -0.21 -2.81 16 8 H 0.09 1.60 7.88 -51.93 -0.41 1.19 16 9 C 0.49 12.17 6.21 -10.99 -0.07 12.11 16 10 O -0.53 -15.27 13.03 5.55 0.07 -15.20 16 11 N -0.42 -10.45 2.84 -107.73 -0.31 -10.75 16 12 C -0.35 -9.44 7.82 -14.93 -0.12 -9.56 16 13 H 0.08 2.00 7.43 -52.49 -0.39 1.61 16 14 C 0.07 2.03 4.38 -17.47 -0.08 1.96 16 15 N -0.83 -24.24 11.55 55.50 0.64 -23.60 16 16 Si 0.91 21.86 29.60 -169.99 -5.03 16.83 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.07 1.32 5.51 -67.93 -0.37 0.95 16 21 C -0.18 -3.17 9.81 -26.73 -0.26 -3.43 16 22 C -0.21 -3.56 10.26 -26.73 -0.27 -3.84 16 23 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.02 7.60 -51.93 -0.39 0.63 16 29 H 0.09 1.74 7.05 -51.93 -0.37 1.38 16 30 H 0.26 7.44 8.32 -40.82 -0.34 7.10 16 31 H 0.11 1.96 4.68 -51.93 -0.24 1.71 16 32 H 0.11 2.13 6.86 -51.93 -0.36 1.78 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 282.98 15.07 4.26 4.26 Total: -1.00 -31.52 282.98 -6.74 -38.25 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.04 Total: 4.17 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -0.94 Total: -6.50 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.33 Total: -34.35 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.33 Total: -22.66 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.52 -6.74 -38.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335103421.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.211 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds