Wall clock time and date at job start Sun Mar 29 2020 22:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.42062 * 2 1 4 4 O 1.44425 * 110.37396 * 122.31751 * 2 1 3 5 5 C 1.44425 * 105.27519 * 159.34241 * 4 2 1 6 6 C 1.54479 * 104.80479 * 319.48695 * 5 4 2 7 7 C 1.54483 * 110.37036 * 237.69594 * 2 1 3 8 8 H 1.08995 * 110.63227 * 335.88580 * 7 2 1 9 9 C 1.50702 * 110.51156 * 98.54560 * 7 2 1 10 10 O 1.21288 * 119.99889 * 356.09150 * 9 7 2 11 11 N 1.34774 * 119.99905 * 175.81782 * 9 7 2 12 12 C 1.37098 * 119.99975 * 179.97438 * 11 9 7 13 13 H 1.08002 * 120.00397 * 222.18353 * 12 11 9 14 14 C 1.38947 * 119.99884 * 42.18672 * 12 11 9 15 15 N 1.31417 * 120.00240 * 18.52146 * 14 12 11 16 16 Si 1.86805 * 120.00057 * 198.52074 * 14 12 11 17 17 H 1.48495 * 109.47115 * 59.99723 * 16 14 12 18 18 H 1.48505 * 109.47081 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46810 * 299.99724 * 16 14 12 20 20 C 1.46501 * 120.00194 * 359.97438 * 11 9 7 21 21 C 1.53002 * 117.50215 * 189.13349 * 20 11 9 22 22 C 1.52999 * 117.49966 * 120.51015 * 20 11 9 23 23 H 1.09008 * 109.47167 * 182.30271 * 1 2 3 24 24 H 1.08996 * 109.47369 * 302.30189 * 1 2 3 25 25 H 1.09000 * 109.47579 * 62.30856 * 1 2 3 26 26 H 1.09001 * 110.37029 * 200.65365 * 5 4 2 27 27 H 1.09001 * 110.36732 * 78.31903 * 5 4 2 28 28 H 1.09003 * 110.50634 * 265.33096 * 6 5 4 29 29 H 1.09000 * 110.62616 * 142.68430 * 6 5 4 30 30 H 0.97003 * 120.00209 * 174.58684 * 15 14 12 31 31 H 1.08998 * 115.54901 * 334.83986 * 20 11 9 32 32 H 1.09006 * 117.49441 * 359.97438 * 21 20 11 33 33 H 1.09001 * 117.49974 * 145.01571 * 21 20 11 34 34 H 1.09000 * 117.49992 * 214.97812 * 22 20 11 35 35 H 1.09002 * 117.49601 * 0.02562 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0214 0.0000 4 8 2.0328 -0.7238 1.1442 5 6 3.3873 -1.0872 0.7993 6 6 3.3178 -1.5056 -0.6861 7 6 2.0677 -0.7739 -1.2241 8 1 1.3286 -1.4918 -1.5796 9 6 2.4481 0.1803 -2.3267 10 8 2.2444 1.3689 -2.1972 11 7 3.0199 -0.2865 -3.4544 12 6 3.3655 0.5815 -4.4577 13 1 3.1722 0.3208 -5.4878 14 6 3.9645 1.7967 -4.1493 15 7 4.5281 1.9723 -2.9752 16 14 3.9687 3.1810 -5.4037 17 1 2.5698 3.5462 -5.7425 18 1 4.6655 4.3625 -4.8347 19 1 4.6749 2.7342 -6.6314 20 6 3.2720 -1.7214 -3.6081 21 6 4.1116 -2.1668 -4.8071 22 6 2.6052 -2.4336 -4.7867 23 1 -0.3634 -1.0269 0.0413 24 1 -0.3634 0.5491 0.8686 25 1 -0.3634 0.4776 -0.9099 26 1 3.7242 -1.9224 1.4134 27 1 4.0524 -0.2324 0.9220 28 1 3.1956 -2.5852 -0.7734 29 1 4.2106 -1.1789 -1.2193 30 1 5.0141 2.7907 -2.7880 31 1 3.3835 -2.2812 -2.6795 32 1 4.4760 -1.3921 -5.4819 33 1 4.7758 -3.0197 -4.6674 34 1 2.2784 -3.4622 -4.6336 35 1 1.9792 -1.8344 -5.4479 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335103421.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:01 Heat of formation + Delta-G solvation = -61.255816 kcal Electronic energy + Delta-G solvation = -18295.158054 eV Core-core repulsion = 15486.873360 eV Total energy + Delta-G solvation = -2808.284693 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.28301 -39.43947 -37.68352 -34.81215 -33.56889 -32.67248 -32.19361 -27.89918 -26.42612 -23.72328 -23.08333 -22.92151 -22.10356 -20.87250 -18.49619 -17.80506 -17.07162 -16.64265 -16.56368 -16.34346 -15.64942 -15.41038 -14.80359 -14.58964 -14.38425 -13.68301 -13.35806 -13.26226 -12.99877 -12.83583 -12.80036 -12.54434 -12.22372 -12.18365 -12.02896 -11.90445 -11.68553 -11.62596 -11.17418 -10.75645 -10.67986 -9.89061 -8.95284 -8.20039 -5.96582 1.34393 1.42962 1.46137 2.22224 2.39543 2.87659 3.08738 3.13330 3.38062 3.74585 3.76342 3.94784 4.13902 4.16642 4.28659 4.34267 4.41156 4.45726 4.53074 4.66889 4.75875 4.88238 4.90558 4.96322 5.06072 5.10965 5.13119 5.24748 5.30483 5.47433 5.49389 5.86122 6.19111 7.03182 7.20454 7.71364 8.37018 8.87947 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.010320 C = 0.008367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.935417 B = 2712.627027 C = 3345.507507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.086 3.914 3 H 0.044 0.956 4 O -0.383 6.383 5 C 0.047 3.953 6 C -0.138 4.138 7 C -0.125 4.125 8 H 0.114 0.886 9 C 0.474 3.526 10 O -0.583 6.583 11 N -0.439 5.439 12 C -0.357 4.357 13 H 0.077 0.923 14 C 0.022 3.978 15 N -0.866 5.866 16 Si 0.967 3.033 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.257 1.257 20 C 0.038 3.962 21 C -0.174 4.174 22 C -0.183 4.183 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.127 0.873 27 H 0.039 0.961 28 H 0.114 0.886 29 H 0.062 0.938 30 H 0.258 0.742 31 H 0.138 0.862 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 -10.986 2.674 11.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.028 3.972 3 H 0.062 0.938 4 O -0.302 6.302 5 C -0.029 4.029 6 C -0.176 4.176 7 C -0.146 4.146 8 H 0.132 0.868 9 C 0.263 3.737 10 O -0.464 6.464 11 N -0.159 5.159 12 C -0.485 4.485 13 H 0.095 0.905 14 C -0.185 4.185 15 N -0.501 5.501 16 Si 0.793 3.207 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.181 1.181 20 C -0.067 4.067 21 C -0.212 4.212 22 C -0.222 4.222 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.145 0.855 27 H 0.057 0.943 28 H 0.132 0.868 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.155 0.845 32 H 0.096 0.904 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.723 -10.263 3.066 11.052 hybrid contribution 0.482 1.365 -0.897 1.703 sum -2.241 -8.898 2.170 9.429 Atomic orbital electron populations 1.21683 0.91404 1.03496 1.02329 1.22746 0.96511 0.94511 0.83432 0.93780 1.89017 1.27873 1.74647 1.38686 1.23488 0.83835 1.00272 0.95352 1.22990 0.96674 1.01931 0.96025 1.22578 0.99641 0.97661 0.94769 0.86808 1.20358 0.80073 0.88598 0.84704 1.90478 1.57064 1.18912 1.79969 1.42936 1.52673 1.04337 1.15951 1.19051 1.41709 0.99303 0.88401 0.90539 1.25980 0.93930 1.01030 0.97516 1.69936 1.30085 1.26451 1.23638 0.85412 0.77883 0.78422 0.79001 1.20819 1.21464 1.18144 1.22316 1.05754 0.83775 0.94836 1.23127 0.94162 1.02789 1.01122 1.23316 0.95154 1.01734 1.01973 0.90000 0.91296 0.92081 0.85496 0.94271 0.86773 0.91953 0.93315 0.84521 0.90362 0.86383 0.85651 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.52 71.98 0.69 -3.49 16 2 C 0.09 3.31 3.25 31.10 0.10 3.41 16 3 H 0.04 2.09 6.96 -2.39 -0.02 2.08 16 4 O -0.38 -13.39 11.34 -148.98 -1.69 -15.08 16 5 C 0.05 1.45 7.63 72.48 0.55 2.01 16 6 C -0.14 -4.45 4.73 31.61 0.15 -4.30 16 7 C -0.12 -4.76 2.29 -10.52 -0.02 -4.78 16 8 H 0.11 3.76 7.88 -2.39 -0.02 3.74 16 9 C 0.47 24.05 6.21 87.66 0.54 24.59 16 10 O -0.58 -35.30 13.03 -3.05 -0.04 -35.34 16 11 N -0.44 -21.71 2.84 -613.13 -1.74 -23.45 16 12 C -0.36 -19.63 7.82 84.04 0.66 -18.97 16 13 H 0.08 4.08 7.43 -2.91 -0.02 4.06 16 14 C 0.02 1.25 4.38 84.92 0.37 1.62 16 15 N -0.87 -52.72 11.55 21.66 0.25 -52.47 16 16 Si 0.97 46.05 29.60 68.60 2.03 48.08 16 17 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 20 C 0.04 1.41 5.51 44.99 0.25 1.66 16 21 C -0.17 -5.83 9.81 30.60 0.30 -5.53 16 22 C -0.18 -5.67 10.26 30.59 0.31 -5.35 16 23 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.11 2.70 7.60 -2.39 -0.02 2.68 16 29 H 0.06 2.38 7.05 -2.39 -0.02 2.36 16 30 H 0.26 15.25 8.32 -92.71 -0.77 14.48 16 31 H 0.14 4.32 4.68 -2.39 -0.01 4.31 16 32 H 0.08 3.08 6.86 -2.38 -0.02 3.07 16 33 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -72.06 282.98 3.78 -68.28 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 1.07 Total: 19.11 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 3.90 Total: -9.14 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.49 Total: -75.92 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -1.73 Total: -50.42 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -72.06 3.78 -68.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335103421.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.026 kcal (2) G-P(sol) polarization free energy of solvation -72.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds