Wall clock time and date at job start Sun Mar 29 2020 22:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.33166 * 2 1 4 4 O 1.44424 * 110.37268 * 237.62638 * 2 1 3 5 5 C 1.44421 * 105.27646 * 200.66023 * 4 2 1 6 6 C 1.54803 * 104.85856 * 40.45983 * 5 4 2 7 7 C 1.54477 * 110.36900 * 122.24524 * 2 1 3 8 8 H 1.08996 * 110.51389 * 261.58935 * 7 2 1 9 9 C 1.50699 * 110.51392 * 24.16677 * 7 2 1 10 10 O 1.21300 * 119.99852 * 80.50695 * 9 7 2 11 11 N 1.34776 * 120.00112 * 260.50526 * 9 7 2 12 12 C 1.37095 * 120.00007 * 179.97438 * 11 9 7 13 13 H 1.08001 * 119.99574 * 138.42986 * 12 11 9 14 14 C 1.38954 * 120.00391 * 318.43804 * 12 11 9 15 15 N 1.31407 * 119.99507 * 340.58823 * 14 12 11 16 16 Si 1.86792 * 119.99931 * 160.59353 * 14 12 11 17 17 H 1.48507 * 109.47150 * 89.99489 * 16 14 12 18 18 H 1.48500 * 109.47372 * 209.99597 * 16 14 12 19 19 H 1.48503 * 109.47394 * 329.99851 * 16 14 12 20 20 C 1.46497 * 119.99643 * 0.02562 * 11 9 7 21 21 C 1.53004 * 117.49572 * 243.78632 * 20 11 9 22 22 C 1.53006 * 60.00062 * 252.51012 * 21 20 11 23 23 H 1.09000 * 109.47178 * 291.83427 * 1 2 3 24 24 H 1.08998 * 109.46847 * 51.83635 * 1 2 3 25 25 H 1.08994 * 109.47096 * 171.83413 * 1 2 3 26 26 H 1.08997 * 110.37502 * 159.34888 * 5 4 2 27 27 H 1.09010 * 110.36731 * 281.56857 * 5 4 2 28 28 H 1.09003 * 110.61087 * 217.51338 * 6 5 4 29 29 H 1.08994 * 110.55310 * 94.70342 * 6 5 4 30 30 H 0.96997 * 119.99385 * 185.05695 * 15 14 12 31 31 H 1.08999 * 115.56619 * 29.47457 * 20 11 9 32 32 H 1.09004 * 117.50183 * 145.02248 * 21 20 11 33 33 H 1.09005 * 117.49724 * 359.97438 * 21 20 11 34 34 H 1.08999 * 117.49582 * 107.48743 * 22 21 20 35 35 H 1.09002 * 117.49853 * 252.48544 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0328 -0.7249 -1.1435 5 6 3.3873 -1.0881 -0.7983 6 6 3.3193 -1.5049 0.6910 7 6 2.0677 -0.7727 1.2248 8 1 2.3407 -0.0819 2.0225 9 6 1.0443 -1.7647 1.7143 10 8 0.9217 -2.8348 1.1565 11 7 0.2653 -1.4629 2.7720 12 6 -0.6660 -2.3651 3.2169 13 1 -0.8032 -2.5213 4.2768 14 6 -1.4334 -3.0789 2.3045 15 7 -1.5580 -2.6458 1.0701 16 14 -2.2878 -4.6537 2.8326 17 1 -3.6441 -4.3330 3.3456 18 1 -2.4024 -5.5690 1.6688 19 1 -1.4964 -5.3112 3.9034 20 6 0.4131 -0.1703 3.4453 21 6 0.8782 -0.1821 4.9029 22 6 -0.5748 0.1594 4.5662 23 1 -0.3633 0.3822 0.9539 24 1 -0.3633 0.6350 -0.8080 25 1 -0.3633 -1.0172 -0.1460 26 1 3.7242 -1.9238 -1.4116 27 1 4.0529 -0.2339 -0.9237 28 1 4.2113 -1.1742 1.2232 29 1 3.1978 -2.5843 0.7812 30 1 -2.1515 -3.1024 0.4536 31 1 0.7524 0.6521 2.8155 32 1 1.5234 0.6324 5.2321 33 1 1.0737 -1.1518 5.3609 34 1 -1.3346 -0.5855 4.8026 35 1 -0.8855 1.1986 4.6742 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335103426.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:05 Heat of formation + Delta-G solvation = -36.325068 kcal Electronic energy + Delta-G solvation = -18561.333023 eV Core-core repulsion = 15754.129409 eV Total energy + Delta-G solvation = -2807.203615 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.65407 -37.73982 -35.86655 -32.81152 -31.77146 -30.81861 -30.55995 -25.99222 -24.73466 -21.84019 -21.56360 -21.50614 -20.80493 -18.62013 -16.70164 -16.04046 -15.77824 -14.95381 -14.76740 -14.55714 -14.01399 -13.72880 -13.53794 -12.75937 -12.20555 -11.82253 -11.50944 -11.44493 -11.21296 -11.06512 -10.91719 -10.86368 -10.65812 -10.44695 -10.28302 -10.13308 -10.10032 -9.91606 -9.74225 -9.21086 -8.69203 -7.87439 -6.98130 -6.05792 -3.79661 3.31296 3.41953 3.43478 4.07424 4.28872 4.46864 4.74454 4.83981 5.20197 5.24979 5.43772 5.51015 5.53452 5.58205 5.66728 5.79230 5.86825 5.98110 6.06905 6.12553 6.20538 6.22773 6.34674 6.45999 6.62865 6.65298 6.72614 6.76516 6.92261 7.33514 7.56593 7.72455 8.31437 9.10636 9.22303 9.71964 10.36740 11.01282 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022030 B = 0.011463 C = 0.009028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.694664 B = 2442.045163 C = 3100.814755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.092 3.908 3 H 0.057 0.943 4 O -0.366 6.366 5 C 0.050 3.950 6 C -0.139 4.139 7 C -0.141 4.141 8 H 0.084 0.916 9 C 0.496 3.504 10 O -0.523 6.523 11 N -0.427 5.427 12 C -0.350 4.350 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.823 5.823 16 Si 0.911 3.089 17 H -0.284 1.284 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.074 3.926 21 C -0.209 4.209 22 C -0.175 4.175 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.114 0.886 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.263 0.737 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.201 6.935 1.752 9.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.074 0.926 4 O -0.285 6.285 5 C -0.028 4.028 6 C -0.177 4.177 7 C -0.164 4.164 8 H 0.102 0.898 9 C 0.283 3.717 10 O -0.400 6.400 11 N -0.148 5.148 12 C -0.477 4.477 13 H 0.094 0.906 14 C -0.137 4.137 15 N -0.457 5.457 16 Si 0.739 3.261 17 H -0.210 1.210 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.032 4.032 21 C -0.248 4.248 22 C -0.212 4.212 23 H 0.087 0.913 24 H 0.059 0.941 25 H 0.132 0.868 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.973 6.222 1.031 8.687 hybrid contribution -0.305 -0.436 0.512 0.739 sum 5.668 5.787 1.544 8.246 Atomic orbital electron populations 1.22071 0.91565 1.06933 1.00977 1.22829 0.96717 0.93143 0.83930 0.92551 1.89153 1.26493 1.74590 1.38216 1.23328 0.85101 0.98811 0.95525 1.22918 0.96312 1.02998 0.95442 1.22811 0.96491 0.98408 0.98644 0.89769 1.19269 0.82154 0.87401 0.82832 1.90532 1.68818 1.25046 1.55572 1.42803 1.32225 1.11189 1.28610 1.18814 1.17465 1.19102 0.92328 0.90646 1.25149 0.95247 0.98306 0.94959 1.69710 1.32752 1.38261 1.04939 0.86231 0.78591 0.83134 0.78163 1.21043 1.21038 1.19849 1.21675 1.03265 0.90173 0.88092 1.23318 0.97714 1.02276 1.01506 1.23075 0.93274 1.01307 1.03578 0.91331 0.94066 0.86771 0.89722 0.93279 0.91329 0.89318 0.92650 0.88057 0.89892 0.89096 0.87467 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.55 37.16 0.32 -3.09 16 2 C 0.09 1.79 3.83 -25.95 -0.10 1.69 16 3 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 4 O -0.37 -7.59 11.34 -35.23 -0.40 -7.99 16 5 C 0.05 0.82 7.64 38.11 0.29 1.11 16 6 C -0.14 -2.45 6.62 -24.99 -0.17 -2.62 16 7 C -0.14 -2.80 2.70 -90.20 -0.24 -3.04 16 8 H 0.08 1.46 6.34 -51.93 -0.33 1.13 16 9 C 0.50 12.37 3.95 -10.99 -0.04 12.33 16 10 O -0.52 -15.32 13.30 5.54 0.07 -15.25 16 11 N -0.43 -10.42 2.68 -107.72 -0.29 -10.71 16 12 C -0.35 -9.38 7.99 -14.93 -0.12 -9.50 16 13 H 0.08 1.97 7.20 -52.49 -0.38 1.59 16 14 C 0.07 2.05 4.35 -17.47 -0.08 1.97 16 15 N -0.82 -23.61 9.96 55.50 0.55 -23.06 16 16 Si 0.91 21.91 29.60 -169.99 -5.03 16.88 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.07 1.46 4.78 -67.93 -0.32 1.13 16 21 C -0.21 -3.53 10.33 -26.73 -0.28 -3.80 16 22 C -0.17 -3.09 9.79 -26.72 -0.26 -3.35 16 23 H 0.07 1.47 6.47 -51.93 -0.34 1.13 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.11 2.99 5.53 -51.93 -0.29 2.70 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 1.80 7.03 -51.93 -0.37 1.43 16 30 H 0.26 7.35 8.32 -40.82 -0.34 7.01 16 31 H 0.10 1.79 6.23 -51.93 -0.32 1.47 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 34 H 0.11 2.11 6.71 -51.93 -0.35 1.76 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 277.71 15.07 4.18 4.18 Total: -1.00 -31.66 277.71 -6.79 -38.45 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.88 Total: 4.66 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.00 Total: -7.17 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.26 Total: -33.77 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.33 Total: -23.24 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.66 -6.79 -38.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335103426.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.127 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds