Wall clock time and date at job start Sun Mar 29 2020 22:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.33166 * 2 1 4 4 O 1.44424 * 110.37268 * 237.62638 * 2 1 3 5 5 C 1.44421 * 105.27646 * 200.66023 * 4 2 1 6 6 C 1.54803 * 104.85856 * 40.45983 * 5 4 2 7 7 C 1.54477 * 110.36900 * 122.24524 * 2 1 3 8 8 H 1.08996 * 110.51389 * 261.58935 * 7 2 1 9 9 C 1.50699 * 110.51392 * 24.16677 * 7 2 1 10 10 O 1.21300 * 119.99852 * 80.50695 * 9 7 2 11 11 N 1.34776 * 120.00112 * 260.50526 * 9 7 2 12 12 C 1.37095 * 120.00007 * 179.97438 * 11 9 7 13 13 H 1.08001 * 119.99574 * 138.42986 * 12 11 9 14 14 C 1.38954 * 120.00391 * 318.43804 * 12 11 9 15 15 N 1.31407 * 119.99507 * 340.58823 * 14 12 11 16 16 Si 1.86792 * 119.99931 * 160.59353 * 14 12 11 17 17 H 1.48507 * 109.47150 * 89.99489 * 16 14 12 18 18 H 1.48500 * 109.47372 * 209.99597 * 16 14 12 19 19 H 1.48503 * 109.47394 * 329.99851 * 16 14 12 20 20 C 1.46497 * 119.99643 * 0.02562 * 11 9 7 21 21 C 1.53004 * 117.49572 * 243.78632 * 20 11 9 22 22 C 1.53006 * 60.00062 * 252.51012 * 21 20 11 23 23 H 1.09000 * 109.47178 * 291.83427 * 1 2 3 24 24 H 1.08998 * 109.46847 * 51.83635 * 1 2 3 25 25 H 1.08994 * 109.47096 * 171.83413 * 1 2 3 26 26 H 1.08997 * 110.37502 * 159.34888 * 5 4 2 27 27 H 1.09010 * 110.36731 * 281.56857 * 5 4 2 28 28 H 1.09003 * 110.61087 * 217.51338 * 6 5 4 29 29 H 1.08994 * 110.55310 * 94.70342 * 6 5 4 30 30 H 0.96997 * 119.99385 * 185.05695 * 15 14 12 31 31 H 1.08999 * 115.56619 * 29.47457 * 20 11 9 32 32 H 1.09004 * 117.50183 * 145.02248 * 21 20 11 33 33 H 1.09005 * 117.49724 * 359.97438 * 21 20 11 34 34 H 1.08999 * 117.49582 * 107.48743 * 22 21 20 35 35 H 1.09002 * 117.49853 * 252.48544 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0328 -0.7249 -1.1435 5 6 3.3873 -1.0881 -0.7983 6 6 3.3193 -1.5049 0.6910 7 6 2.0677 -0.7727 1.2248 8 1 2.3407 -0.0819 2.0225 9 6 1.0443 -1.7647 1.7143 10 8 0.9217 -2.8348 1.1565 11 7 0.2653 -1.4629 2.7720 12 6 -0.6660 -2.3651 3.2169 13 1 -0.8032 -2.5213 4.2768 14 6 -1.4334 -3.0789 2.3045 15 7 -1.5580 -2.6458 1.0701 16 14 -2.2878 -4.6537 2.8326 17 1 -3.6441 -4.3330 3.3456 18 1 -2.4024 -5.5690 1.6688 19 1 -1.4964 -5.3112 3.9034 20 6 0.4131 -0.1703 3.4453 21 6 0.8782 -0.1821 4.9029 22 6 -0.5748 0.1594 4.5662 23 1 -0.3633 0.3822 0.9539 24 1 -0.3633 0.6350 -0.8080 25 1 -0.3633 -1.0172 -0.1460 26 1 3.7242 -1.9238 -1.4116 27 1 4.0529 -0.2339 -0.9237 28 1 4.2113 -1.1742 1.2232 29 1 3.1978 -2.5843 0.7812 30 1 -2.1515 -3.1024 0.4536 31 1 0.7524 0.6521 2.8155 32 1 1.5234 0.6324 5.2321 33 1 1.0737 -1.1518 5.3609 34 1 -1.3346 -0.5855 4.8026 35 1 -0.8855 1.1986 4.6742 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335103426.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:04 Heat of formation + Delta-G solvation = -57.597425 kcal Electronic energy + Delta-G solvation = -18562.255462 eV Core-core repulsion = 15754.129409 eV Total energy + Delta-G solvation = -2808.126053 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.26683 -39.33370 -37.56229 -34.73507 -33.43744 -32.44601 -32.23726 -27.71923 -26.49792 -23.45155 -22.99874 -22.90597 -22.43724 -20.38461 -18.35838 -17.79800 -17.38886 -16.47172 -16.39708 -16.27979 -15.67127 -15.36310 -15.20626 -14.41089 -13.87551 -13.57670 -13.15440 -13.09574 -12.87223 -12.80432 -12.73606 -12.44943 -12.22866 -12.16321 -11.98292 -11.69745 -11.68925 -11.58164 -11.18192 -10.67216 -10.62035 -9.76758 -8.89797 -8.11018 -5.87520 1.35568 1.43405 1.49297 2.28226 2.43122 3.05814 3.10879 3.16498 3.40564 3.74319 3.92219 4.07311 4.12743 4.23826 4.28894 4.36844 4.43322 4.59704 4.62139 4.68792 4.77032 4.91947 4.92408 5.03210 5.08890 5.13342 5.24401 5.31603 5.48373 5.52497 5.76077 6.06384 6.27505 7.10983 7.30527 7.79806 8.48079 8.93423 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022030 B = 0.011463 C = 0.009028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.694664 B = 2442.045163 C = 3100.814755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 H 0.103 0.897 4 O -0.401 6.401 5 C 0.048 3.952 6 C -0.137 4.137 7 C -0.138 4.138 8 H 0.116 0.884 9 C 0.485 3.515 10 O -0.583 6.583 11 N -0.441 5.441 12 C -0.358 4.358 13 H 0.074 0.926 14 C 0.025 3.975 15 N -0.849 5.849 16 Si 0.962 3.038 17 H -0.266 1.266 18 H -0.297 1.297 19 H -0.273 1.273 20 C 0.045 3.955 21 C -0.182 4.182 22 C -0.173 4.173 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.254 0.746 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.922 9.391 2.823 12.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.037 3.963 3 H 0.120 0.880 4 O -0.321 6.321 5 C -0.029 4.029 6 C -0.175 4.175 7 C -0.160 4.160 8 H 0.134 0.866 9 C 0.274 3.726 10 O -0.464 6.464 11 N -0.161 5.161 12 C -0.486 4.486 13 H 0.092 0.908 14 C -0.182 4.182 15 N -0.483 5.483 16 Si 0.789 3.211 17 H -0.192 1.192 18 H -0.224 1.224 19 H -0.198 1.198 20 C -0.060 4.060 21 C -0.221 4.221 22 C -0.210 4.210 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.129 0.871 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.692 8.713 2.150 11.820 hybrid contribution -0.809 -1.179 0.240 1.450 sum 6.883 7.534 2.390 10.481 Atomic orbital electron populations 1.21921 0.93856 1.03994 1.01255 1.22937 0.95011 0.95070 0.83330 0.87968 1.89117 1.28836 1.75220 1.38907 1.23580 0.83961 1.00731 0.94599 1.22940 0.97021 1.00599 0.96896 1.22827 0.95586 0.97854 0.99739 0.86555 1.20172 0.82515 0.87657 0.82215 1.90487 1.70695 1.27803 1.57391 1.42988 1.31458 1.12764 1.28866 1.18991 1.17370 1.20046 0.92177 0.90845 1.25881 0.96471 1.00681 0.95183 1.69870 1.33688 1.39067 1.05699 0.85429 0.78572 0.79963 0.77163 1.19178 1.22406 1.19762 1.21991 1.05943 0.88674 0.89376 1.23336 0.97593 1.02773 0.98397 1.23120 0.93177 1.02464 1.02255 0.91701 0.92614 0.91751 0.89408 0.88958 0.87105 0.93057 0.93646 0.85568 0.85634 0.90977 0.90252 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.54 8.55 71.98 0.62 -5.92 16 2 C 0.09 3.44 3.83 31.10 0.12 3.55 16 3 H 0.10 2.84 8.14 -2.39 -0.02 2.83 16 4 O -0.40 -16.06 11.34 -148.98 -1.69 -17.75 16 5 C 0.05 1.45 7.64 72.60 0.55 2.00 16 6 C -0.14 -4.52 6.62 31.72 0.21 -4.31 16 7 C -0.14 -5.17 2.70 -10.52 -0.03 -5.20 16 8 H 0.12 3.54 6.34 -2.39 -0.02 3.52 16 9 C 0.49 24.39 3.95 87.66 0.35 24.74 16 10 O -0.58 -35.59 13.30 -3.09 -0.04 -35.63 16 11 N -0.44 -21.52 2.68 -613.11 -1.64 -23.16 16 12 C -0.36 -19.61 7.99 84.04 0.67 -18.94 16 13 H 0.07 3.93 7.20 -2.91 -0.02 3.90 16 14 C 0.03 1.43 4.35 84.93 0.37 1.80 16 15 N -0.85 -50.94 9.96 21.66 0.22 -50.73 16 16 Si 0.96 46.49 29.60 68.60 2.03 48.52 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 18 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 19 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 20 C 0.05 1.67 4.78 45.00 0.22 1.88 16 21 C -0.18 -5.54 10.33 30.60 0.32 -5.23 16 22 C -0.17 -5.70 9.79 30.60 0.30 -5.41 16 23 H 0.06 2.74 6.47 -2.39 -0.02 2.72 16 24 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.06 3.48 5.53 -2.39 -0.01 3.46 16 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.05 2.09 7.03 -2.39 -0.02 2.07 16 30 H 0.25 15.02 8.32 -92.71 -0.77 14.25 16 31 H 0.13 3.99 6.23 -2.39 -0.01 3.97 16 32 H 0.13 2.79 8.14 -2.38 -0.02 2.78 16 33 H 0.07 2.48 8.14 -2.38 -0.02 2.47 16 34 H 0.08 3.08 6.71 -2.39 -0.02 3.07 16 35 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -73.65 277.71 3.64 -70.01 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 1.08 Total: 19.75 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 3.69 Total: -11.03 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -1.43 Total: -73.88 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -1.73 Total: -53.37 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -73.65 3.64 -70.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335103426.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.410 kcal (2) G-P(sol) polarization free energy of solvation -73.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds