Wall clock time and date at job start Sun Mar 29 2020 22:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47101 * 2 1 4 4 C 1.50699 * 109.47304 * 240.00266 * 2 1 3 5 5 H 1.07998 * 119.99843 * 245.45675 * 4 2 1 6 6 C 1.37875 * 120.00237 * 65.45035 * 4 2 1 7 7 N 1.31515 * 119.99968 * 9.62218 * 6 4 2 8 8 Si 1.86805 * 119.99962 * 189.62205 * 6 4 2 9 9 H 1.48497 * 109.47151 * 84.99630 * 8 6 4 10 10 H 1.48499 * 109.46919 * 204.99634 * 8 6 4 11 11 H 1.48503 * 109.47095 * 324.99176 * 8 6 4 12 12 N 1.46492 * 109.47192 * 119.99824 * 2 1 3 13 13 C 1.46504 * 120.00352 * 60.00447 * 12 2 1 14 14 C 1.34784 * 120.00247 * 239.99796 * 12 2 1 15 15 O 1.21287 * 119.99611 * 359.73311 * 14 12 2 16 16 C 1.50698 * 120.00131 * 179.97438 * 14 12 2 17 17 H 1.08997 * 110.50444 * 59.02962 * 16 14 12 18 18 C 1.54987 * 110.56872 * 181.78263 * 16 14 12 19 19 C 1.55044 * 102.25908 * 155.54088 * 18 16 14 20 20 C 1.51845 * 104.52730 * 322.57143 * 19 18 16 21 21 O 1.20762 * 126.34104 * 203.70873 * 20 19 18 22 22 C 1.51450 * 107.31687 * 23.68514 * 20 19 18 23 23 H 1.08998 * 109.47085 * 303.28751 * 1 2 3 24 24 H 1.09005 * 109.47174 * 63.29086 * 1 2 3 25 25 H 1.09005 * 109.47008 * 183.28415 * 1 2 3 26 26 H 0.96999 * 119.99905 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46735 * 270.00407 * 13 12 2 28 28 H 1.08997 * 109.46588 * 29.99433 * 13 12 2 29 29 H 1.08998 * 109.47428 * 150.00099 * 13 12 2 30 30 H 1.09001 * 110.83411 * 273.86565 * 18 16 14 31 31 H 1.09001 * 110.83068 * 37.43967 * 18 16 14 32 32 H 1.08997 * 110.48939 * 203.76023 * 19 18 16 33 33 H 1.08998 * 110.41980 * 81.34490 * 19 18 16 34 34 H 1.08997 * 109.98422 * 240.29537 * 22 20 19 35 35 H 1.09002 * 110.01768 * 119.01207 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5787 -1.6369 -1.1338 6 6 1.7945 -0.1774 -2.4796 7 7 1.3002 1.0360 -2.5936 8 14 2.1743 -1.1788 -4.0101 9 1 1.0215 -2.0608 -4.3233 10 1 2.4213 -0.2626 -5.1524 11 1 3.3823 -2.0090 -3.7713 12 7 2.0183 -0.6905 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0355 2.0833 15 8 3.0903 1.1242 1.8889 16 6 3.2951 -0.7457 3.3141 17 1 3.8892 -1.6165 3.0368 18 6 4.1236 0.2192 4.1998 19 6 3.9923 -0.4272 5.6029 20 6 2.5671 -0.9490 5.6501 21 8 1.9137 -1.1571 6.6441 22 6 2.1166 -1.1596 4.2195 23 1 -0.3633 0.5640 0.8590 24 1 -0.3634 0.4619 -0.9180 25 1 -0.3633 -1.0260 0.0589 26 1 1.1332 1.4110 -3.4724 27 1 0.7376 -2.1443 1.9993 28 1 1.5296 -2.5968 0.4709 29 1 2.4630 -2.5818 1.9864 30 1 5.1646 0.2439 3.8776 31 1 3.6908 1.2196 4.1930 32 1 4.1509 0.3178 6.3826 33 1 4.7017 -1.2476 5.7115 34 1 1.2473 -0.5372 4.0073 35 1 1.8719 -2.2091 4.0561 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335533689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:47 Heat of formation + Delta-G solvation = -82.896163 kcal Electronic energy + Delta-G solvation = -17529.007950 eV Core-core repulsion = 14719.784861 eV Total energy + Delta-G solvation = -2809.223089 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.18353 -38.79420 -35.92003 -35.20828 -32.84058 -30.15155 -28.66186 -27.14812 -26.10818 -25.20967 -22.53207 -20.41619 -19.54565 -18.29567 -16.90353 -16.45735 -16.00282 -15.76537 -15.00585 -14.75997 -14.28869 -14.12528 -13.42210 -13.14670 -12.95300 -12.50769 -12.25340 -11.89273 -11.73870 -11.56816 -11.50393 -11.24930 -11.01908 -10.91572 -10.79509 -10.72706 -10.30630 -10.21018 -9.63686 -9.26435 -8.90595 -8.42845 -7.64397 -6.11462 -4.16501 1.82992 3.24824 3.27871 3.32540 3.34545 3.82574 4.11535 4.35229 4.38279 4.72674 4.95234 5.11334 5.19441 5.20952 5.34329 5.37968 5.60672 5.69037 5.74770 5.81176 5.96214 6.08256 6.25749 6.31446 6.64869 6.72728 6.95863 7.31209 7.37666 7.51573 7.66532 7.89810 8.14119 8.48950 8.81858 9.01578 9.48675 10.95962 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.044136 B = 0.005820 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.244361 B = 4809.691894 C = 4896.079519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.255 3.745 3 H 0.070 0.930 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.591 5.591 13 C 0.081 3.919 14 C 0.509 3.491 15 O -0.548 6.548 16 C -0.112 4.112 17 H 0.104 0.896 18 C -0.099 4.099 19 C -0.184 4.184 20 C 0.373 3.627 21 O -0.452 6.452 22 C -0.175 4.175 23 H 0.015 0.985 24 H 0.075 0.925 25 H 0.032 0.968 26 H 0.264 0.736 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 -6.180 11.335 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.155 3.845 3 H 0.088 0.912 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.321 5.321 13 C -0.063 4.063 14 C 0.295 3.705 15 O -0.426 6.426 16 C -0.133 4.133 17 H 0.122 0.878 18 C -0.137 4.137 19 C -0.222 4.222 20 C 0.249 3.751 21 O -0.325 6.325 22 C -0.213 4.213 23 H 0.034 0.966 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.841 -5.537 11.579 13.145 hybrid contribution 0.146 -0.704 -1.115 1.326 sum 2.987 -6.241 10.464 12.545 Atomic orbital electron populations 1.22014 0.98608 0.98862 1.00417 1.18957 0.90398 0.95129 0.80048 0.91206 1.21258 1.36641 1.08593 0.90405 0.92214 1.24903 0.95112 0.94608 0.98973 1.69971 1.44291 1.13707 1.24130 0.86570 0.78666 0.80018 0.82502 1.20484 1.21191 1.19990 1.48213 1.48933 1.11506 1.23478 1.21692 0.98771 0.83475 1.02403 1.20142 0.79322 0.87028 0.83962 1.90662 1.58122 1.17150 1.76682 1.22090 0.96964 1.00165 0.94089 0.87806 1.22348 1.01014 0.99244 0.91074 1.22985 0.96709 1.02471 0.99991 1.24986 0.89204 0.71021 0.89887 1.90412 1.61558 1.41524 1.39049 1.22680 1.00051 1.04517 0.94005 0.96569 0.90595 0.94936 0.92635 0.93807 0.90142 0.92699 0.89863 0.89359 0.88897 0.87794 0.87821 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.12 37.16 0.34 -2.89 16 2 C 0.25 6.32 2.50 -69.09 -0.17 6.15 16 3 H 0.07 2.05 6.84 -51.93 -0.36 1.69 16 4 C -0.53 -14.00 8.01 -34.44 -0.28 -14.27 16 5 H 0.06 1.54 7.16 -52.49 -0.38 1.16 16 6 C 0.07 1.81 5.17 -17.82 -0.09 1.72 16 7 N -0.88 -25.04 12.16 55.43 0.67 -24.37 16 8 Si 0.89 20.64 29.55 -169.99 -5.02 15.62 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.59 -11.89 2.75 -175.26 -0.48 -12.37 16 13 C 0.08 1.24 7.95 59.85 0.48 1.72 16 14 C 0.51 9.82 6.92 -10.98 -0.08 9.74 16 15 O -0.55 -12.90 15.06 5.55 0.08 -12.82 16 16 C -0.11 -1.47 2.34 -90.06 -0.21 -1.68 16 17 H 0.10 1.15 7.38 -51.93 -0.38 0.77 16 18 C -0.10 -1.17 6.00 -24.60 -0.15 -1.32 16 19 C -0.18 -1.76 6.72 -26.24 -0.18 -1.93 16 20 C 0.37 4.47 7.89 -28.10 -0.22 4.25 16 21 O -0.45 -6.80 17.99 6.00 0.11 -6.69 16 22 C -0.17 -2.05 5.05 -26.85 -0.14 -2.18 16 23 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.08 1.92 6.84 -51.93 -0.36 1.56 16 25 H 0.03 0.67 7.56 -51.93 -0.39 0.28 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.04 0.59 7.96 -51.93 -0.41 0.18 16 28 H 0.08 1.34 6.92 -51.93 -0.36 0.98 16 29 H 0.05 0.67 5.97 -51.93 -0.31 0.36 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.22 7.47 -51.93 -0.39 0.83 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.36 7.82 -51.93 -0.41 0.96 16 35 H 0.11 1.03 7.21 -51.93 -0.37 0.66 16 LS Contribution 286.52 15.07 4.32 4.32 Total: -1.00 -31.71 286.52 -5.95 -37.66 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.94 Total: -0.65 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -0.69 Total: -0.70 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.19 Total: -36.73 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.19 Total: -19.51 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.71 -5.95 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335533689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.236 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds