Wall clock time and date at job start Sun Mar 29 2020 22:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47101 * 2 1 4 4 C 1.50699 * 109.47304 * 240.00266 * 2 1 3 5 5 H 1.07998 * 119.99843 * 245.45675 * 4 2 1 6 6 C 1.37875 * 120.00237 * 65.45035 * 4 2 1 7 7 N 1.31515 * 119.99968 * 9.62218 * 6 4 2 8 8 Si 1.86805 * 119.99962 * 189.62205 * 6 4 2 9 9 H 1.48497 * 109.47151 * 84.99630 * 8 6 4 10 10 H 1.48499 * 109.46919 * 204.99634 * 8 6 4 11 11 H 1.48503 * 109.47095 * 324.99176 * 8 6 4 12 12 N 1.46492 * 109.47192 * 119.99824 * 2 1 3 13 13 C 1.46504 * 120.00352 * 60.00447 * 12 2 1 14 14 C 1.34784 * 120.00247 * 239.99796 * 12 2 1 15 15 O 1.21287 * 119.99611 * 359.73311 * 14 12 2 16 16 C 1.50698 * 120.00131 * 179.97438 * 14 12 2 17 17 H 1.08997 * 110.50444 * 59.02962 * 16 14 12 18 18 C 1.54987 * 110.56872 * 181.78263 * 16 14 12 19 19 C 1.55044 * 102.25908 * 155.54088 * 18 16 14 20 20 C 1.51845 * 104.52730 * 322.57143 * 19 18 16 21 21 O 1.20762 * 126.34104 * 203.70873 * 20 19 18 22 22 C 1.51450 * 107.31687 * 23.68514 * 20 19 18 23 23 H 1.08998 * 109.47085 * 303.28751 * 1 2 3 24 24 H 1.09005 * 109.47174 * 63.29086 * 1 2 3 25 25 H 1.09005 * 109.47008 * 183.28415 * 1 2 3 26 26 H 0.96999 * 119.99905 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46735 * 270.00407 * 13 12 2 28 28 H 1.08997 * 109.46588 * 29.99433 * 13 12 2 29 29 H 1.08998 * 109.47428 * 150.00099 * 13 12 2 30 30 H 1.09001 * 110.83411 * 273.86565 * 18 16 14 31 31 H 1.09001 * 110.83068 * 37.43967 * 18 16 14 32 32 H 1.08997 * 110.48939 * 203.76023 * 19 18 16 33 33 H 1.08998 * 110.41980 * 81.34490 * 19 18 16 34 34 H 1.08997 * 109.98422 * 240.29537 * 22 20 19 35 35 H 1.09002 * 110.01768 * 119.01207 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5787 -1.6369 -1.1338 6 6 1.7945 -0.1774 -2.4796 7 7 1.3002 1.0360 -2.5936 8 14 2.1743 -1.1788 -4.0101 9 1 1.0215 -2.0608 -4.3233 10 1 2.4213 -0.2626 -5.1524 11 1 3.3823 -2.0090 -3.7713 12 7 2.0183 -0.6905 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0355 2.0833 15 8 3.0903 1.1242 1.8889 16 6 3.2951 -0.7457 3.3141 17 1 3.8892 -1.6165 3.0368 18 6 4.1236 0.2192 4.1998 19 6 3.9923 -0.4272 5.6029 20 6 2.5671 -0.9490 5.6501 21 8 1.9137 -1.1571 6.6441 22 6 2.1166 -1.1596 4.2195 23 1 -0.3633 0.5640 0.8590 24 1 -0.3634 0.4619 -0.9180 25 1 -0.3633 -1.0260 0.0589 26 1 1.1332 1.4110 -3.4724 27 1 0.7376 -2.1443 1.9993 28 1 1.5296 -2.5968 0.4709 29 1 2.4630 -2.5818 1.9864 30 1 5.1646 0.2439 3.8776 31 1 3.6908 1.2196 4.1930 32 1 4.1509 0.3178 6.3826 33 1 4.7017 -1.2476 5.7115 34 1 1.2473 -0.5372 4.0073 35 1 1.8719 -2.2091 4.0561 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335533689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:46 Heat of formation + Delta-G solvation = -103.783880 kcal Electronic energy + Delta-G solvation = -17529.913710 eV Core-core repulsion = 14719.784861 eV Total energy + Delta-G solvation = -2810.128848 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.39363 -40.08349 -37.31696 -36.66134 -34.72039 -31.79148 -29.83189 -28.23647 -27.45600 -27.24851 -23.94218 -21.88400 -20.49310 -19.75103 -18.47600 -18.05310 -17.33866 -17.04626 -16.57347 -15.97358 -15.72140 -15.50898 -14.66007 -14.46247 -14.29285 -14.08964 -13.64916 -13.57662 -13.06461 -12.86045 -12.80091 -12.71353 -12.62942 -12.38637 -12.23107 -12.17501 -12.05482 -11.75896 -11.21777 -10.71702 -10.51252 -10.34671 -9.29735 -8.15749 -6.28959 0.90769 1.43295 1.43759 1.53355 1.82586 2.33295 2.51144 3.13404 3.15305 3.38934 3.74524 3.85556 4.20465 4.30709 4.33254 4.41516 4.58173 4.73729 4.74768 4.77841 4.86150 4.87273 5.00190 5.02453 5.07536 5.20326 5.29853 5.48520 5.55904 5.68845 6.01657 6.14844 6.45894 6.80279 6.88340 7.34802 7.52163 8.91186 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.044136 B = 0.005820 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.244361 B = 4809.691894 C = 4896.079519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.257 3.743 3 H 0.012 0.988 4 C -0.538 4.538 5 H 0.066 0.934 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.963 3.037 9 H -0.267 1.267 10 H -0.290 1.290 11 H -0.267 1.267 12 N -0.599 5.599 13 C 0.074 3.926 14 C 0.498 3.502 15 O -0.603 6.603 16 C -0.099 4.099 17 H 0.139 0.861 18 C -0.100 4.100 19 C -0.168 4.168 20 C 0.379 3.621 21 O -0.485 6.485 22 C -0.171 4.171 23 H 0.022 0.978 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.263 0.737 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.138 0.862 34 H 0.086 0.914 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.019 -8.989 12.312 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.155 3.845 3 H 0.030 0.970 4 C -0.577 4.577 5 H 0.084 0.916 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.788 3.212 9 H -0.193 1.193 10 H -0.216 1.216 11 H -0.191 1.191 12 N -0.328 5.328 13 C -0.068 4.068 14 C 0.287 3.713 15 O -0.486 6.486 16 C -0.120 4.120 17 H 0.157 0.843 18 C -0.138 4.138 19 C -0.205 4.205 20 C 0.257 3.743 21 O -0.361 6.361 22 C -0.208 4.208 23 H 0.041 0.959 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.156 0.844 34 H 0.105 0.895 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.744 -8.392 12.575 15.575 hybrid contribution -0.129 0.220 -1.401 1.424 sum 3.615 -8.173 11.175 14.308 Atomic orbital electron populations 1.21807 0.97494 0.99973 0.99225 1.18525 0.91221 0.92697 0.82060 0.97017 1.21577 1.36323 1.08614 0.91147 0.91599 1.25779 0.95076 0.95448 1.02256 1.70124 1.45723 1.15456 1.24697 0.85497 0.78945 0.78426 0.78318 1.19253 1.21575 1.19131 1.48219 1.49004 1.13385 1.22229 1.21985 1.01455 0.80563 1.02765 1.21253 0.78197 0.86646 0.85215 1.90635 1.59913 1.19866 1.78136 1.22083 0.97852 1.00817 0.91201 0.84331 1.22335 1.01207 0.97790 0.92432 1.22939 0.95684 1.03474 0.98397 1.25177 0.89971 0.69886 0.89274 1.90418 1.62551 1.43265 1.39896 1.22667 0.98665 1.05879 0.93621 0.95918 0.93399 0.92662 0.92769 0.91578 0.91364 0.88583 0.88683 0.92193 0.87912 0.84381 0.89549 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.91 9.12 71.98 0.66 -5.26 16 2 C 0.26 13.11 2.50 44.25 0.11 13.22 16 3 H 0.01 0.74 6.84 -2.38 -0.02 0.72 16 4 C -0.54 -28.60 8.01 25.60 0.20 -28.39 16 5 H 0.07 3.34 7.16 -2.91 -0.02 3.32 16 6 C 0.01 0.77 5.17 84.65 0.44 1.20 16 7 N -0.92 -53.92 12.16 21.45 0.26 -53.66 16 8 Si 0.96 42.35 29.55 68.60 2.03 44.38 16 9 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 12 N -0.60 -23.73 2.75 -826.79 -2.28 -26.01 16 13 C 0.07 2.07 7.95 127.77 1.02 3.09 16 14 C 0.50 19.07 6.92 87.66 0.61 19.68 16 15 O -0.60 -29.64 15.06 -3.05 -0.05 -29.69 16 16 C -0.10 -2.33 2.34 -10.43 -0.02 -2.35 16 17 H 0.14 2.38 7.38 -2.39 -0.02 2.36 16 18 C -0.10 -2.16 6.00 31.97 0.19 -1.96 16 19 C -0.17 -2.61 6.72 30.91 0.21 -2.40 16 20 C 0.38 8.00 7.89 29.71 0.23 8.23 16 21 O -0.49 -13.60 17.99 -1.46 -0.03 -13.63 16 22 C -0.17 -3.48 5.05 30.52 0.15 -3.33 16 23 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 2.49 6.84 -2.38 -0.02 2.47 16 25 H 0.05 2.27 7.56 -2.38 -0.02 2.25 16 26 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 27 H 0.07 1.56 7.96 -2.39 -0.02 1.54 16 28 H 0.07 2.09 6.92 -2.39 -0.02 2.08 16 29 H 0.10 1.87 5.97 -2.39 -0.01 1.85 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 1.65 7.47 -2.39 -0.02 1.64 16 32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 2.14 7.82 -2.39 -0.02 2.12 16 35 H 0.13 1.98 7.21 -2.39 -0.02 1.96 16 Total: -1.00 -73.16 286.52 4.82 -68.34 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.08 Total: 8.55 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 3.80 Total: 1.72 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -2.01 Total: -79.67 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -0.07 Total: -43.32 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -73.16 4.82 -68.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335533689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.444 kcal (2) G-P(sol) polarization free energy of solvation -73.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds