Wall clock time and date at job start Sun Mar 29 2020 22:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 89.99935 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00326 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00479 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.46500 * 119.99929 * 300.00372 * 12 2 1 14 14 C 1.34781 * 119.99819 * 120.00094 * 12 2 1 15 15 O 1.21274 * 119.99737 * 359.97438 * 14 12 2 16 16 C 1.50697 * 119.99418 * 180.02562 * 14 12 2 17 17 H 1.08997 * 110.74122 * 298.01030 * 16 14 12 18 18 C 1.54990 * 110.82806 * 174.36462 * 16 14 12 19 19 C 1.54285 * 103.75026 * 204.69850 * 18 16 14 20 20 C 1.51450 * 106.84516 * 23.12731 * 19 18 16 21 21 O 1.20766 * 126.33609 * 180.38033 * 20 19 18 22 22 C 1.51843 * 107.32199 * 0.35110 * 20 19 18 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47032 * 89.99688 * 13 12 2 28 28 H 1.08998 * 109.46624 * 209.99482 * 13 12 2 29 29 H 1.08998 * 109.46783 * 329.99227 * 13 12 2 30 30 H 1.08990 * 110.57109 * 323.26801 * 18 16 14 31 31 H 1.09002 * 110.56876 * 86.13730 * 18 16 14 32 32 H 1.08999 * 109.98578 * 263.77842 * 19 18 16 33 33 H 1.09002 * 110.01480 * 142.49026 * 19 18 16 34 34 H 1.09000 * 110.44351 * 217.47501 * 22 20 19 35 35 H 1.09001 * 110.54194 * 95.00333 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0356 -2.0833 15 8 3.0858 1.1256 -1.8915 16 6 3.2952 -0.7460 -3.3139 17 1 3.9328 -1.5869 -3.0412 18 6 4.0425 0.2366 -4.2511 19 6 3.9169 -0.4171 -5.6430 20 6 2.7076 -1.3274 -5.5928 21 8 2.2924 -2.0160 -6.4939 22 6 2.1142 -1.2146 -4.1997 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7081 1.1610 3.4844 27 1 0.7377 -2.1444 -1.9993 28 1 2.4629 -2.5818 -1.9863 29 1 1.5296 -2.5968 -0.4707 30 1 3.5616 1.2146 -4.2425 31 1 5.0897 0.3211 -3.9608 32 1 4.8120 -0.9986 -5.8636 33 1 3.7743 0.3502 -6.4040 34 1 1.7468 -2.1839 -3.8627 35 1 1.3111 -0.4778 -4.1845 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335533690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:49 Heat of formation + Delta-G solvation = -81.262866 kcal Electronic energy + Delta-G solvation = -17529.243188 eV Core-core repulsion = 14720.090924 eV Total energy + Delta-G solvation = -2809.152264 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18893 -38.80807 -35.93235 -35.23146 -32.88543 -30.11689 -28.59259 -27.15900 -26.08452 -25.24347 -22.54516 -20.42128 -19.47952 -18.32280 -16.97700 -16.45723 -16.00990 -15.63608 -15.00402 -14.84550 -14.22813 -14.03692 -13.64239 -13.22282 -12.90398 -12.49070 -12.30636 -11.92118 -11.68581 -11.52580 -11.44599 -11.17675 -11.02435 -10.89788 -10.76733 -10.66264 -10.26893 -10.19508 -9.67101 -9.22044 -8.92898 -8.45014 -7.63257 -6.10048 -4.18302 1.80875 3.25079 3.27124 3.32196 3.34346 3.80244 4.13834 4.34413 4.37613 4.72172 4.95553 5.10124 5.19288 5.21472 5.32776 5.37940 5.59014 5.69165 5.76004 5.82041 5.97811 6.07799 6.25135 6.34690 6.72690 6.80464 7.03536 7.36083 7.38255 7.50336 7.68785 7.98462 8.16922 8.49127 8.79616 9.00568 9.48391 10.95223 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.042949 B = 0.005817 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.776980 B = 4811.949247 C = 4896.714000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.590 5.590 13 C 0.081 3.919 14 C 0.511 3.489 15 O -0.549 6.549 16 C -0.111 4.111 17 H 0.104 0.896 18 C -0.099 4.099 19 C -0.184 4.184 20 C 0.373 3.627 21 O -0.452 6.452 22 C -0.176 4.176 23 H 0.029 0.971 24 H 0.010 0.990 25 H 0.093 0.907 26 H 0.263 0.737 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 -4.672 -11.490 12.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.320 5.320 13 C -0.063 4.063 14 C 0.297 3.703 15 O -0.428 6.428 16 C -0.133 4.133 17 H 0.122 0.878 18 C -0.137 4.137 19 C -0.222 4.222 20 C 0.249 3.751 21 O -0.325 6.325 22 C -0.214 4.214 23 H 0.048 0.952 24 H 0.030 0.970 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.974 -4.311 -11.686 12.806 hybrid contribution 0.293 -0.569 1.043 1.223 sum 3.266 -4.879 -10.643 12.155 Atomic orbital electron populations 1.22079 0.98172 0.99409 1.00784 1.18953 0.90892 0.94529 0.79953 0.91885 1.21313 1.31877 1.13050 0.90313 0.92247 1.24892 0.94904 0.94983 0.98984 1.69876 1.36229 1.22638 1.23792 0.86492 0.78656 0.79843 0.82373 1.20605 1.21119 1.19935 1.48231 1.48749 1.11578 1.23488 1.21715 0.98741 0.83409 1.02440 1.20073 0.79302 0.86982 0.83910 1.90652 1.58381 1.17013 1.76774 1.22204 0.97179 0.99815 0.94089 0.87808 1.22162 1.01589 0.98988 0.90977 1.22720 0.98999 1.00335 1.00144 1.24998 0.84385 0.77590 0.88150 1.90413 1.62990 1.35905 1.43225 1.23003 0.99364 1.04695 0.94341 0.95154 0.97044 0.88861 0.92658 0.93717 0.92732 0.90087 0.89397 0.90130 0.88366 0.88268 0.88031 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.97 37.16 0.33 -3.08 16 2 C 0.26 6.38 2.64 -69.08 -0.18 6.20 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 4 C -0.53 -13.92 7.99 -34.44 -0.28 -14.19 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 12 N -0.59 -11.92 2.75 -175.26 -0.48 -12.40 16 13 C 0.08 1.28 7.88 59.85 0.47 1.75 16 14 C 0.51 9.81 7.07 -10.98 -0.08 9.73 16 15 O -0.55 -12.77 15.12 5.56 0.08 -12.68 16 16 C -0.11 -1.48 2.36 -89.73 -0.21 -1.69 16 17 H 0.10 1.21 7.54 -51.93 -0.39 0.82 16 18 C -0.10 -1.16 5.92 -25.01 -0.15 -1.30 16 19 C -0.18 -1.75 6.69 -26.84 -0.18 -1.93 16 20 C 0.37 4.38 7.88 -28.10 -0.22 4.16 16 21 O -0.45 -6.65 17.99 5.99 0.11 -6.54 16 22 C -0.18 -2.08 5.24 -26.32 -0.14 -2.21 16 23 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.04 0.63 7.62 -51.93 -0.40 0.23 16 28 H 0.05 0.69 5.94 -51.93 -0.31 0.38 16 29 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 30 H 0.09 1.16 7.51 -51.93 -0.39 0.77 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.10 6.18 -51.93 -0.32 0.78 16 35 H 0.11 1.34 8.03 -51.93 -0.42 0.93 16 LS Contribution 284.67 15.07 4.29 4.29 Total: -1.00 -31.12 284.67 -5.99 -37.11 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.87 Total: -0.38 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -0.72 Total: -0.94 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.14 Total: -36.55 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.19 Total: -19.22 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.12 -5.99 -37.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335533690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.151 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds