Wall clock time and date at job start Sun Mar 29 2020 22:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 89.99935 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00326 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00479 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.46500 * 119.99929 * 300.00372 * 12 2 1 14 14 C 1.34781 * 119.99819 * 120.00094 * 12 2 1 15 15 O 1.21274 * 119.99737 * 359.97438 * 14 12 2 16 16 C 1.50697 * 119.99418 * 180.02562 * 14 12 2 17 17 H 1.08997 * 110.74122 * 298.01030 * 16 14 12 18 18 C 1.54990 * 110.82806 * 174.36462 * 16 14 12 19 19 C 1.54285 * 103.75026 * 204.69850 * 18 16 14 20 20 C 1.51450 * 106.84516 * 23.12731 * 19 18 16 21 21 O 1.20766 * 126.33609 * 180.38033 * 20 19 18 22 22 C 1.51843 * 107.32199 * 0.35110 * 20 19 18 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47032 * 89.99688 * 13 12 2 28 28 H 1.08998 * 109.46624 * 209.99482 * 13 12 2 29 29 H 1.08998 * 109.46783 * 329.99227 * 13 12 2 30 30 H 1.08990 * 110.57109 * 323.26801 * 18 16 14 31 31 H 1.09002 * 110.56876 * 86.13730 * 18 16 14 32 32 H 1.08999 * 109.98578 * 263.77842 * 19 18 16 33 33 H 1.09002 * 110.01480 * 142.49026 * 19 18 16 34 34 H 1.09000 * 110.44351 * 217.47501 * 22 20 19 35 35 H 1.09001 * 110.54194 * 95.00333 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0356 -2.0833 15 8 3.0858 1.1256 -1.8915 16 6 3.2952 -0.7460 -3.3139 17 1 3.9328 -1.5869 -3.0412 18 6 4.0425 0.2366 -4.2511 19 6 3.9169 -0.4171 -5.6430 20 6 2.7076 -1.3274 -5.5928 21 8 2.2924 -2.0160 -6.4939 22 6 2.1142 -1.2146 -4.1997 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7081 1.1610 3.4844 27 1 0.7377 -2.1444 -1.9993 28 1 2.4629 -2.5818 -1.9863 29 1 1.5296 -2.5968 -0.4707 30 1 3.5616 1.2146 -4.2425 31 1 5.0897 0.3211 -3.9608 32 1 4.8120 -0.9986 -5.8636 33 1 3.7743 0.3502 -6.4040 34 1 1.7468 -2.1839 -3.8627 35 1 1.3111 -0.4778 -4.1845 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335533690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:48 Heat of formation + Delta-G solvation = -101.227513 kcal Electronic energy + Delta-G solvation = -17530.108920 eV Core-core repulsion = 14720.090924 eV Total energy + Delta-G solvation = -2810.017996 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.39686 -40.09507 -37.32977 -36.68220 -34.75758 -31.73231 -29.80641 -28.25666 -27.44800 -27.28229 -23.94735 -21.90120 -20.42406 -19.78139 -18.49669 -18.12396 -17.31240 -17.01064 -16.52395 -16.12436 -15.63789 -15.38321 -14.68886 -14.60219 -14.33228 -14.08678 -13.64806 -13.55646 -13.09276 -12.84908 -12.77608 -12.72372 -12.66362 -12.38914 -12.16059 -12.10854 -12.04338 -11.70473 -11.17836 -10.78929 -10.53903 -10.32740 -9.29827 -8.13588 -6.30041 0.89469 1.42612 1.43638 1.53409 1.81084 2.31931 2.50282 3.14683 3.15465 3.37425 3.71706 3.88988 4.16477 4.27739 4.35061 4.38561 4.54826 4.69451 4.76285 4.77888 4.87438 4.91181 4.99591 5.06875 5.08789 5.20428 5.30844 5.49495 5.62184 5.69018 6.05421 6.18194 6.45353 6.78496 6.87110 7.33879 7.50885 8.90662 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.042949 B = 0.005817 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.776980 B = 4811.949247 C = 4896.714000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.009 0.991 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.282 1.282 10 H -0.282 1.282 11 H -0.261 1.261 12 N -0.598 5.598 13 C 0.077 3.923 14 C 0.502 3.498 15 O -0.600 6.600 16 C -0.101 4.101 17 H 0.131 0.869 18 C -0.098 4.098 19 C -0.170 4.170 20 C 0.383 3.617 21 O -0.481 6.481 22 C -0.173 4.173 23 H 0.046 0.954 24 H 0.020 0.980 25 H 0.065 0.935 26 H 0.264 0.736 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.026 -6.787 -12.556 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.027 0.973 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.208 1.208 10 H -0.208 1.208 11 H -0.185 1.185 12 N -0.328 5.328 13 C -0.066 4.066 14 C 0.291 3.709 15 O -0.483 6.483 16 C -0.122 4.122 17 H 0.149 0.851 18 C -0.136 4.136 19 C -0.207 4.207 20 C 0.261 3.739 21 O -0.357 6.357 22 C -0.211 4.211 23 H 0.065 0.935 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.142 0.858 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.847 -6.461 -12.773 14.822 hybrid contribution 0.016 0.143 1.363 1.370 sum 3.863 -6.319 -11.411 13.603 Atomic orbital electron populations 1.21863 0.97299 1.00034 0.99841 1.18522 0.91524 0.92274 0.81894 0.97286 1.21600 1.31778 1.13072 0.91133 0.91911 1.25736 0.95093 0.95656 1.02060 1.70024 1.37330 1.24011 1.24377 0.85466 0.77737 0.79259 0.78615 1.20829 1.20779 1.18501 1.48222 1.48936 1.13295 1.22340 1.21967 1.01247 0.80726 1.02619 1.21102 0.78155 0.86606 0.85041 1.90625 1.59988 1.19526 1.78121 1.22180 0.98166 1.00370 0.91471 0.85090 1.22145 1.01636 0.97807 0.91972 1.22653 0.98914 1.00266 0.98894 1.25062 0.84526 0.76956 0.87354 1.90423 1.63953 1.37377 1.43935 1.22985 0.98553 1.05184 0.94352 0.93532 0.96137 0.91618 0.92706 0.91557 0.88978 0.91484 0.91487 0.89217 0.85812 0.86715 0.86532 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.97 71.98 0.65 -5.62 16 2 C 0.26 13.25 2.64 44.25 0.12 13.37 16 3 H 0.01 0.56 6.90 -2.39 -0.02 0.55 16 4 C -0.54 -28.64 7.99 25.60 0.20 -28.43 16 5 H 0.06 3.22 7.33 -2.91 -0.02 3.20 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -52.63 11.32 21.44 0.24 -52.39 16 8 Si 0.96 42.46 29.54 68.60 2.03 44.49 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 12 N -0.60 -23.90 2.75 -826.80 -2.28 -26.17 16 13 C 0.08 2.24 7.88 127.77 1.01 3.24 16 14 C 0.50 19.11 7.07 87.66 0.62 19.73 16 15 O -0.60 -28.85 15.12 -3.01 -0.05 -28.90 16 16 C -0.10 -2.44 2.36 -10.22 -0.02 -2.46 16 17 H 0.13 2.52 7.54 -2.39 -0.02 2.50 16 18 C -0.10 -2.07 5.92 31.71 0.19 -1.88 16 19 C -0.17 -2.64 6.69 30.52 0.20 -2.44 16 20 C 0.38 7.82 7.88 29.71 0.23 8.06 16 21 O -0.48 -12.89 17.99 -1.47 -0.03 -12.92 16 22 C -0.17 -3.59 5.24 30.86 0.16 -3.43 16 23 H 0.05 2.00 7.67 -2.39 -0.02 1.98 16 24 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 3.50 6.07 -2.38 -0.01 3.49 16 26 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 27 H 0.07 1.65 7.62 -2.39 -0.02 1.64 16 28 H 0.09 1.98 5.94 -2.39 -0.01 1.96 16 29 H 0.07 2.17 7.02 -2.39 -0.02 2.15 16 30 H 0.07 1.72 7.51 -2.39 -0.02 1.71 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.12 2.08 6.18 -2.39 -0.01 2.07 16 35 H 0.10 2.33 8.03 -2.39 -0.02 2.31 16 Total: -1.00 -70.11 284.67 4.81 -65.30 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.08 Total: 9.25 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 3.81 Total: 1.35 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -2.03 Total: -78.57 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.07 Total: -41.82 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -70.11 4.81 -65.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335533690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.932 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds