Wall clock time and date at job start Sun Mar 29 2020 22:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47105 * 2 1 4 4 C 1.50701 * 109.47412 * 119.99973 * 2 1 3 5 5 H 1.08000 * 119.99655 * 119.99937 * 4 2 1 6 6 C 1.37873 * 120.00101 * 300.00549 * 4 2 1 7 7 N 1.31518 * 119.99735 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00280 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46935 * 89.99474 * 8 6 4 10 10 H 1.48496 * 109.47233 * 209.99626 * 8 6 4 11 11 H 1.48502 * 109.46796 * 329.99490 * 8 6 4 12 12 N 1.46506 * 109.47011 * 240.00090 * 2 1 3 13 13 C 1.46491 * 120.00066 * 299.42980 * 12 2 1 14 14 C 1.34779 * 119.99584 * 119.15838 * 12 2 1 15 15 O 1.21287 * 119.99643 * 186.33408 * 14 12 2 16 16 C 1.50694 * 120.00190 * 6.32841 * 14 12 2 17 17 H 1.09002 * 110.51069 * 39.97579 * 16 14 12 18 18 C 1.54994 * 110.56630 * 162.88160 * 16 14 12 19 19 C 1.54886 * 102.33025 * 155.65494 * 18 16 14 20 20 C 1.51848 * 104.43508 * 322.37290 * 19 18 16 21 21 O 1.20762 * 126.34549 * 203.81096 * 20 19 18 22 22 C 1.51453 * 107.31343 * 23.79340 * 20 19 18 23 23 H 1.09000 * 109.47445 * 60.00228 * 1 2 3 24 24 H 1.09011 * 109.46949 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47243 * 299.99605 * 1 2 3 26 26 H 0.96997 * 119.99508 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47615 * 95.35614 * 13 12 2 28 28 H 1.09001 * 109.47110 * 215.35544 * 13 12 2 29 29 H 1.08996 * 109.47492 * 335.35224 * 13 12 2 30 30 H 1.08993 * 110.83486 * 273.86212 * 18 16 14 31 31 H 1.08997 * 110.83193 * 37.44971 * 18 16 14 32 32 H 1.09005 * 110.44420 * 203.63743 * 19 18 16 33 33 H 1.09001 * 110.54954 * 81.16489 * 19 18 16 34 34 H 1.08993 * 109.98035 * 240.29132 * 22 20 19 35 35 H 1.09007 * 110.01490 * 119.00951 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3432 -0.9493 5.1120 11 1 2.4859 -2.5663 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 1.6747 -2.0967 -1.4218 14 6 2.7791 -0.0307 -2.0919 15 8 3.0876 -0.5651 -3.1361 16 6 3.2463 1.3711 -1.7961 17 1 3.5358 1.4643 -0.7493 18 6 4.4231 1.7606 -2.7265 19 6 4.3332 3.3067 -2.7441 20 6 2.8431 3.5992 -2.7456 21 8 2.3117 4.6057 -3.1492 22 6 2.1467 2.3945 -2.1476 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.7094 1.1616 3.4844 27 1 0.7992 -2.1577 -2.0683 28 1 2.5139 -2.6039 -1.8979 29 1 1.4555 -2.5748 -0.4672 30 1 5.3740 1.4324 -2.3069 31 1 4.2779 1.3524 -3.7267 32 1 4.8001 3.7050 -3.6449 33 1 4.8028 3.7275 -1.8550 34 1 1.4563 1.9651 -2.8734 35 1 1.6065 2.6851 -1.2465 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335533691.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:50 Heat of formation + Delta-G solvation = -84.344671 kcal Electronic energy + Delta-G solvation = -17764.614509 eV Core-core repulsion = 14955.328608 eV Total energy + Delta-G solvation = -2809.285901 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.05588 -38.71711 -35.81802 -35.38389 -32.71191 -29.51734 -29.17002 -27.40107 -25.72502 -25.36878 -21.87963 -20.99516 -19.34415 -18.12336 -16.86965 -16.63215 -15.85319 -15.41422 -14.93054 -14.61165 -14.30355 -14.21885 -13.28716 -13.18666 -12.80812 -12.65347 -12.11221 -11.79852 -11.59155 -11.40613 -11.27630 -11.14481 -11.00617 -10.97744 -10.80950 -10.65944 -10.31868 -10.19443 -9.47671 -9.40817 -8.99819 -8.60264 -7.70752 -6.24690 -4.33558 2.04815 3.17325 3.22431 3.25599 3.29073 3.86640 4.24561 4.32193 4.59661 4.94761 5.06678 5.14680 5.35109 5.43785 5.58679 5.59528 5.83197 5.95022 6.02387 6.14271 6.18648 6.24463 6.39751 6.44979 6.55317 6.69181 6.86400 7.13342 7.33762 7.58751 7.59802 7.78232 8.04660 8.38089 8.68476 8.92763 9.35253 10.79876 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.007812 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.645480 B = 3583.431426 C = 4006.957949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.251 3.749 3 H 0.056 0.944 4 C -0.532 4.532 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.589 5.589 13 C 0.096 3.904 14 C 0.516 3.484 15 O -0.573 6.573 16 C -0.109 4.109 17 H 0.114 0.886 18 C -0.102 4.102 19 C -0.182 4.182 20 C 0.376 3.624 21 O -0.454 6.454 22 C -0.171 4.171 23 H 0.012 0.988 24 H 0.033 0.967 25 H 0.095 0.905 26 H 0.265 0.735 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.702 1.446 -5.077 6.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.150 3.850 3 H 0.074 0.926 4 C -0.571 4.571 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.319 5.319 13 C -0.048 4.048 14 C 0.303 3.697 15 O -0.454 6.454 16 C -0.130 4.130 17 H 0.132 0.868 18 C -0.140 4.140 19 C -0.220 4.220 20 C 0.252 3.748 21 O -0.328 6.328 22 C -0.209 4.209 23 H 0.032 0.968 24 H 0.052 0.948 25 H 0.113 0.887 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.458 1.797 -5.647 6.861 hybrid contribution 0.188 -0.600 1.171 1.329 sum 3.646 1.197 -4.476 5.896 Atomic orbital electron populations 1.22123 0.97898 1.00033 1.00870 1.19125 0.91517 0.93478 0.80846 0.92618 1.21354 1.32114 1.13490 0.90129 0.91926 1.24886 0.94678 0.94947 0.99041 1.69849 1.35994 1.22572 1.24094 0.86489 0.78648 0.80071 0.82221 1.20522 1.21073 1.19839 1.48269 1.48957 1.11470 1.23192 1.21397 0.99289 0.82636 1.01454 1.20243 0.78463 0.87619 0.83343 1.90589 1.59441 1.69723 1.25694 1.22041 0.95941 0.92263 1.02750 0.86797 1.22369 0.97927 0.92551 1.01157 1.22935 0.96168 0.98395 1.04503 1.24963 0.92285 0.85741 0.71835 1.90395 1.74710 1.29409 1.38282 1.22596 0.99294 0.95243 1.03772 0.96849 0.94804 0.88677 0.92483 0.94233 0.92611 0.90291 0.90165 0.89387 0.89058 0.87639 0.88310 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.98 37.16 0.33 -2.94 16 2 C 0.25 5.52 2.38 -69.08 -0.16 5.36 16 3 H 0.06 1.25 4.68 -51.93 -0.24 1.00 16 4 C -0.53 -12.98 7.95 -34.44 -0.27 -13.25 16 5 H 0.06 1.55 7.39 -52.49 -0.39 1.16 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -22.61 11.32 55.43 0.63 -21.99 16 8 Si 0.90 19.59 29.54 -169.99 -5.02 14.57 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 12 N -0.59 -12.00 2.75 -175.27 -0.48 -12.48 16 13 C 0.10 1.79 9.28 59.84 0.56 2.34 16 14 C 0.52 10.07 6.75 -10.99 -0.07 9.99 16 15 O -0.57 -12.25 15.46 5.55 0.09 -12.17 16 16 C -0.11 -1.76 2.26 -90.06 -0.20 -1.96 16 17 H 0.11 1.89 6.99 -51.93 -0.36 1.53 16 18 C -0.10 -1.37 6.17 -24.68 -0.15 -1.52 16 19 C -0.18 -2.15 6.72 -26.32 -0.18 -2.33 16 20 C 0.38 5.55 7.88 -28.10 -0.22 5.33 16 21 O -0.45 -7.97 17.99 6.00 0.11 -7.86 16 22 C -0.17 -2.64 5.83 -26.85 -0.16 -2.79 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.03 0.71 7.68 -51.92 -0.40 0.31 16 25 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 26 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.01 7.69 -51.93 -0.40 0.61 16 29 H 0.08 1.48 7.06 -51.93 -0.37 1.11 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.28 7.25 -51.93 -0.38 0.90 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.57 7.82 -51.93 -0.41 1.16 16 35 H 0.11 1.78 7.41 -51.92 -0.38 1.39 16 LS Contribution 286.95 15.07 4.32 4.32 Total: -1.00 -27.85 286.95 -5.88 -33.73 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.89 Total: 2.07 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.63 Total: -0.19 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.15 Total: -34.47 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.19 Total: -20.03 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.85 -5.88 -33.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335533691.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.620 kcal (2) G-P(sol) polarization free energy of solvation -27.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds