Wall clock time and date at job start Sun Mar 29 2020 22:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47105 * 2 1 4 4 C 1.50701 * 109.47412 * 119.99973 * 2 1 3 5 5 H 1.08000 * 119.99655 * 119.99937 * 4 2 1 6 6 C 1.37873 * 120.00101 * 300.00549 * 4 2 1 7 7 N 1.31518 * 119.99735 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00280 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46935 * 89.99474 * 8 6 4 10 10 H 1.48496 * 109.47233 * 209.99626 * 8 6 4 11 11 H 1.48502 * 109.46796 * 329.99490 * 8 6 4 12 12 N 1.46506 * 109.47011 * 240.00090 * 2 1 3 13 13 C 1.46491 * 120.00066 * 299.42980 * 12 2 1 14 14 C 1.34779 * 119.99584 * 119.15838 * 12 2 1 15 15 O 1.21287 * 119.99643 * 186.33408 * 14 12 2 16 16 C 1.50694 * 120.00190 * 6.32841 * 14 12 2 17 17 H 1.09002 * 110.51069 * 39.97579 * 16 14 12 18 18 C 1.54994 * 110.56630 * 162.88160 * 16 14 12 19 19 C 1.54886 * 102.33025 * 155.65494 * 18 16 14 20 20 C 1.51848 * 104.43508 * 322.37290 * 19 18 16 21 21 O 1.20762 * 126.34549 * 203.81096 * 20 19 18 22 22 C 1.51453 * 107.31343 * 23.79340 * 20 19 18 23 23 H 1.09000 * 109.47445 * 60.00228 * 1 2 3 24 24 H 1.09011 * 109.46949 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47243 * 299.99605 * 1 2 3 26 26 H 0.96997 * 119.99508 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47615 * 95.35614 * 13 12 2 28 28 H 1.09001 * 109.47110 * 215.35544 * 13 12 2 29 29 H 1.08996 * 109.47492 * 335.35224 * 13 12 2 30 30 H 1.08993 * 110.83486 * 273.86212 * 18 16 14 31 31 H 1.08997 * 110.83193 * 37.44971 * 18 16 14 32 32 H 1.09005 * 110.44420 * 203.63743 * 19 18 16 33 33 H 1.09001 * 110.54954 * 81.16489 * 19 18 16 34 34 H 1.08993 * 109.98035 * 240.29132 * 22 20 19 35 35 H 1.09007 * 110.01490 * 119.00951 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3432 -0.9493 5.1120 11 1 2.4859 -2.5663 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 1.6747 -2.0967 -1.4218 14 6 2.7791 -0.0307 -2.0919 15 8 3.0876 -0.5651 -3.1361 16 6 3.2463 1.3711 -1.7961 17 1 3.5358 1.4643 -0.7493 18 6 4.4231 1.7606 -2.7265 19 6 4.3332 3.3067 -2.7441 20 6 2.8431 3.5992 -2.7456 21 8 2.3117 4.6057 -3.1492 22 6 2.1467 2.3945 -2.1476 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.7094 1.1616 3.4844 27 1 0.7992 -2.1577 -2.0683 28 1 2.5139 -2.6039 -1.8979 29 1 1.4555 -2.5748 -0.4672 30 1 5.3740 1.4324 -2.3069 31 1 4.2779 1.3524 -3.7267 32 1 4.8001 3.7050 -3.6449 33 1 4.8028 3.7275 -1.8550 34 1 1.4563 1.9651 -2.8734 35 1 1.6065 2.6851 -1.2465 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335533691.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:50 Heat of formation + Delta-G solvation = -99.971621 kcal Electronic energy + Delta-G solvation = -17765.292144 eV Core-core repulsion = 14955.328608 eV Total energy + Delta-G solvation = -2809.963536 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.43773 -40.11829 -37.40615 -36.76772 -34.53462 -31.03870 -30.61222 -28.72038 -27.24908 -27.10089 -23.46262 -22.39792 -20.53970 -19.63928 -18.41394 -18.33810 -17.21418 -16.84576 -16.53096 -16.08899 -15.83435 -15.57129 -14.78476 -14.53913 -14.26648 -14.12281 -13.70177 -13.39212 -13.06833 -12.84689 -12.79335 -12.75313 -12.49172 -12.44944 -12.23716 -12.17045 -12.07596 -11.66066 -11.19091 -10.81926 -10.53052 -10.40476 -9.37085 -8.13167 -6.27253 0.86732 1.44375 1.48350 1.55390 1.70132 2.32326 2.48951 3.12734 3.16650 3.42784 3.75170 3.79246 4.20541 4.30507 4.33692 4.44985 4.62497 4.66466 4.68469 4.76821 4.85057 4.95585 4.97702 4.98173 5.09188 5.15544 5.28766 5.41387 5.58670 5.75891 5.96772 6.22132 6.41633 6.67866 6.86122 7.30978 7.46564 8.89784 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.007812 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.645480 B = 3583.431426 C = 4006.957949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.257 3.743 3 H 0.053 0.947 4 C -0.542 4.542 5 H 0.055 0.945 6 C 0.030 3.970 7 N -0.908 5.908 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.597 5.597 13 C 0.095 3.905 14 C 0.512 3.488 15 O -0.592 6.592 16 C -0.107 4.107 17 H 0.110 0.890 18 C -0.095 4.095 19 C -0.167 4.167 20 C 0.380 3.620 21 O -0.484 6.484 22 C -0.169 4.169 23 H 0.025 0.975 24 H 0.032 0.968 25 H 0.074 0.926 26 H 0.265 0.735 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.130 0.870 34 H 0.091 0.909 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.827 1.616 -5.104 7.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.155 3.845 3 H 0.071 0.929 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.171 4.171 7 N -0.546 5.546 8 Si 0.777 3.223 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.326 5.326 13 C -0.048 4.048 14 C 0.301 3.699 15 O -0.475 6.475 16 C -0.128 4.128 17 H 0.128 0.872 18 C -0.133 4.133 19 C -0.204 4.204 20 C 0.259 3.741 21 O -0.360 6.360 22 C -0.207 4.207 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.132 0.868 33 H 0.148 0.852 34 H 0.109 0.891 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.591 1.952 -5.677 7.558 hybrid contribution -0.189 -0.702 1.155 1.365 sum 4.402 1.250 -4.522 6.434 Atomic orbital electron populations 1.21978 0.97760 0.99829 1.00446 1.18938 0.91517 0.93220 0.80782 0.92924 1.21554 1.31968 1.13329 0.91206 0.92690 1.25471 0.94916 0.95532 1.01211 1.69940 1.36711 1.23444 1.24507 0.85661 0.78093 0.79066 0.79435 1.20248 1.21100 1.19792 1.48320 1.49306 1.12084 1.22932 1.21442 0.99870 0.82014 1.01496 1.20781 0.77749 0.88677 0.82742 1.90575 1.60035 1.70528 1.26359 1.22038 0.97218 0.90290 1.03252 0.87151 1.22360 0.97399 0.93651 0.99881 1.22904 0.93709 0.97063 1.06725 1.25179 0.93775 0.84633 0.70563 1.90393 1.75592 1.30344 1.39688 1.22552 0.99132 0.95672 1.03371 0.95568 0.94842 0.90686 0.92516 0.93189 0.92270 0.90651 0.88408 0.90375 0.86789 0.85246 0.89056 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.10 8.98 71.98 0.65 -5.45 16 2 C 0.26 11.21 2.38 44.24 0.11 11.31 16 3 H 0.05 2.34 4.68 -2.39 -0.01 2.33 16 4 C -0.54 -26.17 7.95 25.60 0.20 -25.97 16 5 H 0.05 2.69 7.39 -2.91 -0.02 2.67 16 6 C 0.03 1.45 5.30 84.65 0.45 1.90 16 7 N -0.91 -46.00 11.32 21.45 0.24 -45.75 16 8 Si 0.95 39.62 29.54 68.60 2.03 41.65 16 9 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.29 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 N -0.60 -23.95 2.75 -826.81 -2.28 -26.22 16 13 C 0.09 3.48 9.28 127.77 1.19 4.66 16 14 C 0.51 19.54 6.75 87.65 0.59 20.13 16 15 O -0.59 -24.77 15.46 -3.05 -0.05 -24.82 16 16 C -0.11 -3.32 2.26 -10.43 -0.02 -3.34 16 17 H 0.11 3.54 6.99 -2.39 -0.02 3.52 16 18 C -0.10 -2.32 6.17 31.92 0.20 -2.13 16 19 C -0.17 -3.42 6.72 30.86 0.21 -3.21 16 20 C 0.38 10.64 7.88 29.71 0.23 10.87 16 21 O -0.48 -16.47 17.99 -1.46 -0.03 -16.50 16 22 C -0.17 -5.09 5.83 30.52 0.18 -4.91 16 23 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 24 H 0.03 1.39 7.68 -2.38 -0.02 1.37 16 25 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 26 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 2.11 7.69 -2.39 -0.02 2.09 16 29 H 0.07 2.79 7.06 -2.39 -0.02 2.77 16 30 H 0.10 2.07 8.14 -2.39 -0.02 2.06 16 31 H 0.08 2.10 7.25 -2.39 -0.02 2.09 16 32 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.09 2.88 7.82 -2.39 -0.02 2.86 16 35 H 0.10 3.31 7.41 -2.38 -0.02 3.29 16 Total: -1.00 -57.59 286.95 4.98 -52.61 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.08 Total: 15.16 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 3.97 Total: 3.87 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -2.03 Total: -71.98 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -0.07 Total: -41.32 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -57.59 4.98 -52.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335533691.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.359 kcal (2) G-P(sol) polarization free energy of solvation -57.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds