Wall clock time and date at job start Sun Mar 29 2020 22:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.51575 * 2 1 4 4 C 1.53296 * 109.51302 * 239.89868 * 2 1 3 5 5 N 1.47147 * 108.38733 * 187.77739 * 4 2 1 6 6 C 1.34778 * 120.98119 * 230.51578 * 5 4 2 7 7 O 1.21682 * 120.00462 * 174.76073 * 6 5 4 8 8 C 1.46375 * 119.99895 * 354.75639 * 6 5 4 9 9 H 1.08004 * 119.99893 * 4.71403 * 8 6 5 10 10 C 1.40054 * 120.00303 * 184.98511 * 8 6 5 11 11 N 1.30676 * 119.99477 * 354.69719 * 10 8 6 12 12 Si 1.86791 * 120.00346 * 174.70146 * 10 8 6 13 13 H 1.48496 * 109.47486 * 94.99835 * 12 10 8 14 14 H 1.48497 * 109.47199 * 214.99988 * 12 10 8 15 15 H 1.48507 * 109.46950 * 334.99626 * 12 10 8 16 16 C 1.47145 * 118.03686 * 50.78105 * 5 4 2 17 17 C 1.53707 * 108.16465 * 309.16197 * 16 5 4 18 18 H 1.08996 * 109.65612 * 292.57066 * 17 16 5 19 19 C 1.53001 * 109.48776 * 172.39670 * 17 16 5 20 20 C 1.52994 * 117.50039 * 248.98828 * 19 17 16 21 21 C 1.52997 * 60.00138 * 252.50702 * 20 19 17 22 22 O 1.42961 * 109.51255 * 120.15456 * 2 1 3 23 23 H 1.08996 * 109.47400 * 180.10311 * 1 2 3 24 24 H 1.09001 * 109.46739 * 300.09938 * 1 2 3 25 25 H 1.08994 * 109.47298 * 60.09416 * 1 2 3 26 26 H 1.09003 * 109.67976 * 68.05164 * 4 2 1 27 27 H 1.09000 * 109.67823 * 307.50266 * 4 2 1 28 28 H 0.96999 * 119.99497 * 179.97438 * 11 10 8 29 29 H 1.09007 * 109.68220 * 68.94338 * 16 5 4 30 30 H 1.09001 * 109.68493 * 189.49027 * 16 5 4 31 31 H 1.09009 * 115.54578 * 34.68968 * 19 17 16 32 32 H 1.09003 * 117.50138 * 359.97438 * 20 19 17 33 33 H 1.09006 * 117.49721 * 145.01964 * 20 19 17 34 34 H 1.09001 * 117.50056 * 252.51584 * 21 20 19 35 35 H 1.08997 * 117.50117 * 107.48748 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5011 -0.8758 -1.1340 6 6 4.3192 -0.5033 -2.1382 7 8 5.5259 -0.5467 -1.9878 8 6 3.7561 -0.0467 -3.4098 9 1 2.6873 0.0644 -3.5182 10 6 4.6029 0.2407 -4.4877 11 7 5.8993 0.2015 -4.3285 12 14 3.8792 0.6801 -6.1527 13 1 3.7968 2.1571 -6.2826 14 1 4.7464 0.1362 -7.2285 15 1 2.5189 0.0961 -6.2708 16 6 4.0402 -1.4511 0.1084 17 6 3.4312 -0.6861 1.2944 18 1 3.8030 0.3385 1.2995 19 6 3.8211 -1.3778 2.6023 20 6 2.7123 -2.0817 3.3870 21 6 3.3014 -0.7685 3.9059 22 8 2.0075 -0.6769 1.1652 23 1 -0.3634 -1.0276 0.0018 24 1 -0.3633 0.5154 0.8891 25 1 -0.3633 0.5123 -0.8908 26 1 1.8030 -0.1389 -2.1377 27 1 1.5756 -1.7073 -1.3216 28 1 6.4858 0.4002 -5.0752 29 1 3.7717 -2.5057 0.1714 30 1 5.1251 -1.3467 0.1209 31 1 4.8134 -1.8288 2.6179 32 1 1.7049 -2.0517 2.9718 33 1 2.9750 -2.9961 3.9190 34 1 3.9516 -0.8189 4.7793 35 1 2.6817 0.1251 3.8319 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335744440.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:15 Heat of formation + Delta-G solvation = -55.749001 kcal Electronic energy + Delta-G solvation = -17712.303366 eV Core-core repulsion = 14904.257466 eV Total energy + Delta-G solvation = -2808.045900 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.45977 -37.13444 -36.20560 -33.34568 -32.59377 -31.99761 -28.69344 -26.26966 -25.47158 -23.18385 -22.24621 -21.02758 -19.99354 -19.11794 -16.72633 -16.05945 -15.90022 -15.51440 -14.86324 -14.61784 -14.22652 -13.90692 -13.50509 -12.87494 -12.63279 -12.16307 -12.11130 -11.60651 -11.50475 -11.32020 -11.28505 -11.15658 -10.99721 -10.80745 -10.37017 -10.27451 -10.15552 -10.04971 -9.82315 -9.30188 -8.87875 -7.64300 -7.21611 -6.24786 -4.69739 3.10288 3.17853 3.21418 3.82841 4.00294 4.09474 4.42107 4.52750 4.89168 5.08488 5.15055 5.26093 5.44720 5.52152 5.64755 5.67944 5.72263 5.77825 5.84379 5.91445 5.99554 6.11765 6.19048 6.27314 6.29162 6.38329 6.44746 6.49614 6.63480 7.40194 7.49882 7.62903 8.06495 8.28964 8.97096 9.36802 10.51890 10.70421 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.035652 B = 0.006814 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.189828 B = 4108.075149 C = 4734.221390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.057 0.943 4 C 0.097 3.903 5 N -0.646 5.646 6 C 0.559 3.441 7 O -0.577 6.577 8 C -0.544 4.544 9 H 0.073 0.927 10 C 0.087 3.913 11 N -0.766 5.766 12 Si 0.907 3.093 13 H -0.272 1.272 14 H -0.278 1.278 15 H -0.264 1.264 16 C 0.098 3.902 17 C 0.110 3.890 18 H 0.060 0.940 19 C -0.148 4.148 20 C -0.164 4.164 21 C -0.177 4.177 22 O -0.381 6.381 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.050 0.950 28 H 0.269 0.731 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.893 -1.145 9.559 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.075 0.925 4 C -0.028 4.028 5 N -0.385 5.385 6 C 0.365 3.635 7 O -0.459 6.459 8 C -0.581 4.581 9 H 0.091 0.909 10 C -0.133 4.133 11 N -0.395 5.395 12 Si 0.731 3.269 13 H -0.198 1.198 14 H -0.203 1.203 15 H -0.188 1.188 16 C -0.026 4.026 17 C 0.052 3.948 18 H 0.078 0.922 19 C -0.167 4.167 20 C -0.201 4.201 21 C -0.214 4.214 22 O -0.301 6.301 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.128 -1.232 9.660 12.684 hybrid contribution -0.202 0.301 -1.000 1.064 sum -8.330 -0.932 8.660 12.052 Atomic orbital electron populations 1.21693 0.93234 1.02614 1.02111 1.22529 0.94443 0.95613 0.86103 0.92474 1.22092 0.82911 0.99780 0.97992 1.48296 1.05305 1.68334 1.16561 1.18281 0.85362 0.77112 0.82703 1.90590 1.14625 1.59112 1.81592 1.20957 0.93964 1.47891 0.95261 0.90947 1.25737 0.94414 0.93060 1.00040 1.70025 1.03346 1.34717 1.31395 0.86365 0.79795 0.79072 0.81623 1.19764 1.20329 1.18764 1.21822 1.00348 0.95920 0.84550 1.21940 0.81356 0.98425 0.93105 0.92180 1.22275 0.99086 1.04420 0.90906 1.22815 0.99287 0.95248 1.02766 1.22897 1.03980 0.97784 0.96740 1.87786 1.20891 1.77714 1.43684 0.91967 0.92291 0.90981 0.88378 0.93201 0.92033 0.93138 0.89144 0.86705 0.87736 0.89464 0.89220 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.57 37.16 0.36 -1.40 16 2 C 0.07 1.18 3.40 -26.58 -0.09 1.09 16 3 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.10 1.87 5.79 -3.54 -0.02 1.85 16 5 N -0.65 -15.17 3.01 -173.69 -0.52 -15.70 16 6 C 0.56 16.09 7.63 -12.99 -0.10 15.99 16 7 O -0.58 -18.77 14.51 5.20 0.08 -18.70 16 8 C -0.54 -15.23 8.85 -35.63 -0.32 -15.54 16 9 H 0.07 1.84 5.77 -52.48 -0.30 1.53 16 10 C 0.09 2.42 5.50 -17.36 -0.10 2.33 16 11 N -0.77 -22.88 11.85 55.55 0.66 -22.22 16 12 Si 0.91 19.87 29.56 -169.99 -5.03 14.85 16 13 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 16 C 0.10 2.02 5.95 -3.32 -0.02 2.00 16 17 C 0.11 1.92 3.15 -26.36 -0.08 1.83 16 18 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 19 C -0.15 -2.11 5.71 -90.62 -0.52 -2.63 16 20 C -0.16 -2.08 9.87 -26.74 -0.26 -2.34 16 21 C -0.18 -2.17 10.19 -26.73 -0.27 -2.45 16 22 O -0.38 -6.44 8.38 -35.23 -0.30 -6.74 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.10 1.92 5.50 -51.93 -0.29 1.64 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 2.03 7.06 -51.93 -0.37 1.66 16 31 H 0.12 1.54 8.12 -51.92 -0.42 1.11 16 32 H 0.10 1.43 7.07 -51.93 -0.37 1.06 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 287.47 15.07 4.33 4.33 Total: -1.00 -33.26 287.47 -7.31 -40.56 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.11 Total: 2.89 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -1.42 Total: 0.72 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.13 Total: -37.92 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.22 Total: -25.43 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.26 -7.31 -40.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335744440.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.185 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds