Wall clock time and date at job start Sun Mar 29 2020 22:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.51575 * 2 1 4 4 C 1.53296 * 109.51302 * 239.89868 * 2 1 3 5 5 N 1.47147 * 108.38733 * 187.77739 * 4 2 1 6 6 C 1.34778 * 120.98119 * 230.51578 * 5 4 2 7 7 O 1.21682 * 120.00462 * 174.76073 * 6 5 4 8 8 C 1.46375 * 119.99895 * 354.75639 * 6 5 4 9 9 H 1.08004 * 119.99893 * 4.71403 * 8 6 5 10 10 C 1.40054 * 120.00303 * 184.98511 * 8 6 5 11 11 N 1.30676 * 119.99477 * 354.69719 * 10 8 6 12 12 Si 1.86791 * 120.00346 * 174.70146 * 10 8 6 13 13 H 1.48496 * 109.47486 * 94.99835 * 12 10 8 14 14 H 1.48497 * 109.47199 * 214.99988 * 12 10 8 15 15 H 1.48507 * 109.46950 * 334.99626 * 12 10 8 16 16 C 1.47145 * 118.03686 * 50.78105 * 5 4 2 17 17 C 1.53707 * 108.16465 * 309.16197 * 16 5 4 18 18 H 1.08996 * 109.65612 * 292.57066 * 17 16 5 19 19 C 1.53001 * 109.48776 * 172.39670 * 17 16 5 20 20 C 1.52994 * 117.50039 * 248.98828 * 19 17 16 21 21 C 1.52997 * 60.00138 * 252.50702 * 20 19 17 22 22 O 1.42961 * 109.51255 * 120.15456 * 2 1 3 23 23 H 1.08996 * 109.47400 * 180.10311 * 1 2 3 24 24 H 1.09001 * 109.46739 * 300.09938 * 1 2 3 25 25 H 1.08994 * 109.47298 * 60.09416 * 1 2 3 26 26 H 1.09003 * 109.67976 * 68.05164 * 4 2 1 27 27 H 1.09000 * 109.67823 * 307.50266 * 4 2 1 28 28 H 0.96999 * 119.99497 * 179.97438 * 11 10 8 29 29 H 1.09007 * 109.68220 * 68.94338 * 16 5 4 30 30 H 1.09001 * 109.68493 * 189.49027 * 16 5 4 31 31 H 1.09009 * 115.54578 * 34.68968 * 19 17 16 32 32 H 1.09003 * 117.50138 * 359.97438 * 20 19 17 33 33 H 1.09006 * 117.49721 * 145.01964 * 20 19 17 34 34 H 1.09001 * 117.50056 * 252.51584 * 21 20 19 35 35 H 1.08997 * 117.50117 * 107.48748 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5011 -0.8758 -1.1340 6 6 4.3192 -0.5033 -2.1382 7 8 5.5259 -0.5467 -1.9878 8 6 3.7561 -0.0467 -3.4098 9 1 2.6873 0.0644 -3.5182 10 6 4.6029 0.2407 -4.4877 11 7 5.8993 0.2015 -4.3285 12 14 3.8792 0.6801 -6.1527 13 1 3.7968 2.1571 -6.2826 14 1 4.7464 0.1362 -7.2285 15 1 2.5189 0.0961 -6.2708 16 6 4.0402 -1.4511 0.1084 17 6 3.4312 -0.6861 1.2944 18 1 3.8030 0.3385 1.2995 19 6 3.8211 -1.3778 2.6023 20 6 2.7123 -2.0817 3.3870 21 6 3.3014 -0.7685 3.9059 22 8 2.0075 -0.6769 1.1652 23 1 -0.3634 -1.0276 0.0018 24 1 -0.3633 0.5154 0.8891 25 1 -0.3633 0.5123 -0.8908 26 1 1.8030 -0.1389 -2.1377 27 1 1.5756 -1.7073 -1.3216 28 1 6.4858 0.4002 -5.0752 29 1 3.7717 -2.5057 0.1714 30 1 5.1251 -1.3467 0.1209 31 1 4.8134 -1.8288 2.6179 32 1 1.7049 -2.0517 2.9718 33 1 2.9750 -2.9961 3.9190 34 1 3.9516 -0.8189 4.7793 35 1 2.6817 0.1251 3.8319 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335744440.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:15 Heat of formation + Delta-G solvation = -78.050213 kcal Electronic energy + Delta-G solvation = -17713.270419 eV Core-core repulsion = 14904.257466 eV Total energy + Delta-G solvation = -2809.012953 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99187 -38.93653 -37.55393 -35.21602 -34.63949 -33.41493 -30.27656 -28.22819 -26.99182 -24.79737 -23.25290 -22.41806 -21.32824 -20.99301 -18.61719 -17.89355 -17.46332 -16.77327 -16.51562 -16.18882 -15.91908 -15.31291 -15.23374 -14.58648 -13.90085 -13.72943 -13.64031 -13.22525 -13.10593 -12.97708 -12.74991 -12.51114 -12.28994 -12.18360 -12.11878 -11.97972 -11.65255 -11.23849 -11.13783 -10.96274 -10.72867 -9.85858 -9.10550 -8.33864 -6.89585 1.38636 1.39963 1.56379 2.20316 2.40214 2.53743 2.68830 2.97631 3.51213 3.66261 3.90553 3.94957 4.09463 4.14622 4.18663 4.28523 4.42169 4.49819 4.55936 4.67885 4.81342 4.85024 4.90607 4.99019 5.04503 5.08793 5.26833 5.31095 5.34096 5.40560 5.64570 6.03920 6.21792 6.27876 6.82676 7.32131 8.38707 8.61876 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.035652 B = 0.006814 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.189828 B = 4108.075149 C = 4734.221390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.073 3.927 3 H 0.045 0.955 4 C 0.093 3.907 5 N -0.652 5.652 6 C 0.539 3.461 7 O -0.631 6.631 8 C -0.568 4.568 9 H 0.095 0.905 10 C 0.028 3.972 11 N -0.822 5.822 12 Si 0.998 3.002 13 H -0.261 1.261 14 H -0.273 1.273 15 H -0.245 1.245 16 C 0.097 3.903 17 C 0.122 3.878 18 H 0.040 0.960 19 C -0.171 4.171 20 C -0.153 4.153 21 C -0.161 4.161 22 O -0.374 6.374 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.275 0.725 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.541 -1.119 9.814 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.014 3.986 3 H 0.063 0.937 4 C -0.030 4.030 5 N -0.389 5.389 6 C 0.346 3.654 7 O -0.519 6.519 8 C -0.604 4.604 9 H 0.113 0.887 10 C -0.187 4.187 11 N -0.451 5.451 12 Si 0.817 3.183 13 H -0.185 1.185 14 H -0.198 1.198 15 H -0.168 1.168 16 C -0.027 4.027 17 C 0.063 3.937 18 H 0.058 0.942 19 C -0.189 4.189 20 C -0.190 4.190 21 C -0.198 4.198 22 O -0.293 6.293 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.840 -1.218 9.965 14.774 hybrid contribution 0.622 0.264 -1.014 1.219 sum -10.218 -0.953 8.950 13.617 Atomic orbital electron populations 1.21679 0.89556 1.03703 1.03734 1.22612 0.97099 0.94300 0.84541 0.93727 1.22332 0.80291 1.00867 0.99542 1.48205 1.06937 1.67382 1.16403 1.18749 0.85227 0.77225 0.84232 1.90535 1.16963 1.61451 1.82915 1.21489 0.95353 1.48077 0.95502 0.88687 1.27050 0.94557 0.92064 1.05050 1.70201 1.05570 1.35985 1.33357 0.84998 0.79405 0.79218 0.74675 1.18520 1.19829 1.16795 1.21935 0.98936 0.96880 0.84936 1.21739 0.81454 0.97132 0.93375 0.94175 1.22219 1.00151 1.06335 0.90216 1.22878 0.97976 0.96363 1.01744 1.22981 1.03459 0.97494 0.95899 1.87819 1.20225 1.77604 1.43682 0.91116 0.90780 0.89292 0.88797 0.91860 0.91496 0.92185 0.92051 0.86213 0.88552 0.87300 0.86911 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.57 71.98 0.69 -2.18 16 2 C 0.07 2.31 3.40 30.69 0.10 2.41 16 3 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 4 C 0.09 3.53 5.79 86.36 0.50 4.03 16 5 N -0.65 -31.51 3.01 -821.65 -2.48 -33.99 16 6 C 0.54 32.31 7.63 86.36 0.66 32.97 16 7 O -0.63 -43.52 14.51 -4.29 -0.06 -43.59 16 8 C -0.57 -32.31 8.85 24.83 0.22 -32.09 16 9 H 0.10 4.78 5.77 -2.91 -0.02 4.76 16 10 C 0.03 1.56 5.50 85.31 0.47 2.03 16 11 N -0.82 -50.72 11.85 21.84 0.26 -50.46 16 12 Si 1.00 40.54 29.56 68.60 2.03 42.57 16 13 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 14 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 15 H -0.24 -9.12 7.11 99.48 0.71 -8.41 16 16 C 0.10 4.14 5.95 86.49 0.51 4.66 16 17 C 0.12 4.27 3.15 30.83 0.10 4.36 16 18 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 19 C -0.17 -4.69 5.71 -10.80 -0.06 -4.76 16 20 C -0.15 -3.48 9.87 30.59 0.30 -3.18 16 21 C -0.16 -3.58 10.19 30.59 0.31 -3.27 16 22 O -0.37 -12.18 8.38 -148.98 -1.25 -13.43 16 23 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.09 3.61 5.50 -2.39 -0.01 3.60 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.28 15.32 8.29 -92.71 -0.77 14.55 16 29 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.06 2.95 7.06 -2.39 -0.02 2.94 16 31 H 0.12 3.15 8.12 -2.38 -0.02 3.13 16 32 H 0.10 2.39 7.07 -2.39 -0.02 2.37 16 33 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -75.51 287.47 3.38 -72.13 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 1.07 Total: 21.77 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 3.80 Total: 4.99 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -2.22 Total: -84.45 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -1.31 Total: -57.02 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -75.51 3.38 -72.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335744440.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.916 kcal (2) G-P(sol) polarization free energy of solvation -75.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds