Wall clock time and date at job start Sun Mar 29 2020 22:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47347 * 2 1 4 4 C 1.50705 * 109.47252 * 240.00345 * 2 1 3 5 5 O 1.21282 * 119.99539 * 274.97037 * 4 2 1 6 6 N 1.34773 * 120.00113 * 94.96752 * 4 2 1 7 7 C 1.47580 * 134.49447 * 174.97648 * 6 4 2 8 8 C 1.53940 * 86.11927 * 155.35421 * 7 6 4 9 9 O 1.42897 * 113.74602 * 269.15619 * 8 7 6 10 10 C 1.50705 * 113.74258 * 137.94923 * 8 7 6 11 11 H 1.07999 * 119.99412 * 0.02562 * 10 8 7 12 12 C 1.37873 * 120.00130 * 180.02562 * 10 8 7 13 13 N 1.31513 * 120.00074 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99688 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47013 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47079 * 299.99425 * 14 12 10 17 17 H 1.48498 * 109.47490 * 59.99886 * 14 12 10 18 18 C 1.47584 * 134.49313 * 354.97196 * 6 4 2 19 19 C 1.53001 * 109.47285 * 120.00267 * 2 1 3 20 20 C 1.53005 * 117.49838 * 248.74772 * 19 2 1 21 21 C 1.53005 * 117.49706 * 180.08743 * 19 2 1 22 22 H 1.08997 * 109.47196 * 64.96795 * 1 2 3 23 23 H 1.09002 * 109.46590 * 184.96287 * 1 2 3 24 24 H 1.08999 * 109.46726 * 304.96217 * 1 2 3 25 25 H 1.09002 * 113.76761 * 41.05750 * 7 6 4 26 26 H 1.08999 * 113.87408 * 269.67506 * 7 6 4 27 27 H 0.96701 * 114.00299 * 178.07717 * 9 8 7 28 28 H 0.97000 * 119.99510 * 180.02562 * 13 12 10 29 29 H 1.08993 * 113.76829 * 90.33998 * 18 6 4 30 30 H 1.08999 * 113.76876 * 318.94322 * 18 6 4 31 31 H 1.08999 * 115.55064 * 34.41696 * 19 2 1 32 32 H 1.09006 * 117.49616 * 359.97438 * 20 19 2 33 33 H 1.08990 * 117.49974 * 145.01820 * 20 19 2 34 34 H 1.08997 * 117.49241 * 214.97555 * 21 19 2 35 35 H 1.08997 * 117.49901 * 359.97438 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1487 -1.9176 -1.2287 6 7 2.3523 -0.0041 -2.3329 7 6 2.9444 -0.3418 -3.6419 8 6 2.2316 0.9158 -4.1712 9 8 0.9193 0.6633 -4.6774 10 6 3.0742 1.7414 -5.1091 11 1 4.0791 1.4276 -5.3500 12 6 2.5622 2.8972 -5.6594 13 7 1.3383 3.2790 -5.3663 14 14 3.6065 3.9202 -6.8223 15 1 2.8312 5.1042 -7.2721 16 1 4.8340 4.3711 -6.1186 17 1 3.9847 3.0989 -8.0003 18 6 2.2513 1.4175 -2.7160 19 6 2.0401 -0.7213 1.2492 20 6 2.7394 0.1230 2.3165 21 6 3.5551 -0.8263 1.4352 22 1 -0.3633 0.4348 -0.9311 23 1 -0.3632 -1.0239 0.0889 24 1 -0.3633 0.5889 0.8422 25 1 2.5679 -1.2720 -4.0675 26 1 4.0320 -0.2730 -3.6651 27 1 0.4568 1.4553 -4.9839 28 1 0.9780 4.0920 -5.7538 29 1 3.1351 2.0039 -2.4653 30 1 1.3214 1.8920 -2.4023 31 1 1.4319 -1.5595 1.5893 32 1 2.8364 1.1924 2.1284 33 1 2.5916 -0.1599 3.3586 34 1 3.9436 -1.7334 1.8981 35 1 4.1884 -0.3819 0.6674 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335973907.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:51 Heat of formation + Delta-G solvation = -34.351699 kcal Electronic energy + Delta-G solvation = -17556.657765 eV Core-core repulsion = 14749.539722 eV Total energy + Delta-G solvation = -2807.118043 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.71775 -38.00923 -36.42275 -33.91764 -32.20669 -32.09117 -28.48113 -25.57565 -25.23573 -24.05415 -22.28102 -21.11183 -19.60422 -18.05809 -17.43080 -16.38693 -15.75728 -15.20288 -14.79616 -14.53631 -14.36381 -13.98009 -13.17169 -12.85847 -12.55918 -12.39662 -12.04637 -11.73925 -11.53921 -11.52275 -11.44104 -11.10664 -11.04511 -10.85332 -10.53923 -10.29834 -10.24373 -10.05479 -9.51652 -9.04050 -8.75223 -8.38192 -7.78241 -6.39420 -4.49747 3.15809 3.21738 3.23687 3.26716 3.51682 3.99983 4.18511 4.66952 4.83423 4.92500 5.00292 5.23185 5.37674 5.45739 5.58726 5.67664 5.72039 5.89408 5.98992 6.00484 6.07229 6.16923 6.21954 6.23603 6.40049 6.41537 6.54492 6.66698 6.72012 7.11050 7.63017 7.82645 8.52858 8.55509 8.85019 9.21496 9.46700 10.67118 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036853 B = 0.006113 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.591500 B = 4579.234296 C = 4657.866478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 H 0.085 0.915 4 C 0.535 3.465 5 O -0.561 6.561 6 N -0.634 5.634 7 C 0.110 3.890 8 C 0.239 3.761 9 O -0.573 6.573 10 C -0.537 4.537 11 H 0.070 0.930 12 C 0.072 3.928 13 N -0.899 5.899 14 Si 0.908 3.092 15 H -0.285 1.285 16 H -0.274 1.274 17 H -0.273 1.273 18 C 0.077 3.923 19 C -0.128 4.128 20 C -0.181 4.181 21 C -0.173 4.173 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.392 0.608 28 H 0.274 0.726 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 -0.585 9.726 9.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 H 0.103 0.897 4 C 0.324 3.676 5 O -0.441 6.441 6 N -0.367 5.367 7 C -0.012 4.012 8 C 0.198 3.802 9 O -0.385 6.385 10 C -0.575 4.575 11 H 0.089 0.911 12 C -0.130 4.130 13 N -0.539 5.539 14 Si 0.735 3.265 15 H -0.210 1.210 16 H -0.199 1.199 17 H -0.198 1.198 18 C -0.046 4.046 19 C -0.146 4.146 20 C -0.218 4.218 21 C -0.210 4.210 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.248 0.752 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.800 -1.781 10.002 10.191 hybrid contribution 0.411 1.301 -0.659 1.516 sum 1.211 -0.480 9.343 9.433 Atomic orbital electron populations 1.21646 0.92534 1.02581 1.02508 1.20791 0.97718 0.99456 0.91643 0.89656 1.20118 0.77660 0.87083 0.82730 1.90607 1.55962 1.14236 1.83270 1.50207 1.60581 1.11779 1.14142 1.23427 0.97640 1.00341 0.79823 1.19825 0.82699 0.89260 0.88446 1.86061 1.29115 1.39793 1.83536 1.21488 1.00614 1.07226 1.28186 0.91143 1.25062 0.95238 0.96981 0.95718 1.69312 1.15169 1.25146 1.44318 0.86391 0.80026 0.79202 0.80907 1.20992 1.19930 1.19842 1.24295 1.00572 0.81322 0.98423 1.22009 0.95427 1.01337 0.95877 1.23071 1.05019 0.97599 0.96078 1.22873 0.94098 1.01338 1.02698 0.91758 0.92040 0.91773 0.91264 0.89806 0.75244 0.91602 0.90238 0.91445 0.87400 0.88818 0.88859 0.88866 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.16 37.16 0.34 -1.62 16 2 C -0.07 -1.20 2.73 -91.77 -0.25 -1.45 16 3 H 0.09 1.31 7.53 -51.93 -0.39 0.92 16 4 C 0.53 10.99 6.70 -10.98 -0.07 10.91 16 5 O -0.56 -13.14 17.19 5.56 0.10 -13.04 16 6 N -0.63 -13.55 3.61 -178.32 -0.64 -14.19 16 7 C 0.11 2.43 8.23 -2.98 -0.02 2.41 16 8 C 0.24 5.74 1.44 -90.85 -0.13 5.61 16 9 O -0.57 -14.78 13.48 -35.23 -0.48 -15.26 16 10 C -0.54 -13.42 8.62 -34.44 -0.30 -13.71 16 11 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 12 C 0.07 1.79 5.40 -17.82 -0.10 1.70 16 13 N -0.90 -22.59 11.09 55.43 0.61 -21.98 16 14 Si 0.91 19.33 29.54 -169.99 -5.02 14.30 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 C 0.08 1.64 7.74 -2.97 -0.02 1.62 16 19 C -0.13 -1.82 4.67 -90.61 -0.42 -2.24 16 20 C -0.18 -2.09 10.18 -26.69 -0.27 -2.36 16 21 C -0.17 -2.36 9.87 -26.69 -0.26 -2.63 16 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 26 H 0.08 1.70 8.09 -51.93 -0.42 1.28 16 27 H 0.39 10.16 6.46 45.56 0.29 10.45 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.11 1.51 8.11 -51.93 -0.42 1.08 16 32 H 0.09 1.03 8.05 -51.93 -0.42 0.62 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 298.55 15.07 4.50 4.50 Total: -1.00 -27.93 298.55 -7.15 -35.08 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -4.70 Total: 12.35 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -1.51 Total: -1.77 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.03 Total: -36.17 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.38 Total: -28.30 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.93 -7.15 -35.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335973907.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.729 kcal (2) G-P(sol) polarization free energy of solvation -27.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds