Wall clock time and date at job start Sun Mar 29 2020 22:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47347 * 2 1 4 4 C 1.50705 * 109.47252 * 240.00345 * 2 1 3 5 5 O 1.21282 * 119.99539 * 274.97037 * 4 2 1 6 6 N 1.34773 * 120.00113 * 94.96752 * 4 2 1 7 7 C 1.47580 * 134.49447 * 174.97648 * 6 4 2 8 8 C 1.53940 * 86.11927 * 155.35421 * 7 6 4 9 9 O 1.42897 * 113.74602 * 269.15619 * 8 7 6 10 10 C 1.50705 * 113.74258 * 137.94923 * 8 7 6 11 11 H 1.07999 * 119.99412 * 0.02562 * 10 8 7 12 12 C 1.37873 * 120.00130 * 180.02562 * 10 8 7 13 13 N 1.31513 * 120.00074 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99688 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47013 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47079 * 299.99425 * 14 12 10 17 17 H 1.48498 * 109.47490 * 59.99886 * 14 12 10 18 18 C 1.47584 * 134.49313 * 354.97196 * 6 4 2 19 19 C 1.53001 * 109.47285 * 120.00267 * 2 1 3 20 20 C 1.53005 * 117.49838 * 248.74772 * 19 2 1 21 21 C 1.53005 * 117.49706 * 180.08743 * 19 2 1 22 22 H 1.08997 * 109.47196 * 64.96795 * 1 2 3 23 23 H 1.09002 * 109.46590 * 184.96287 * 1 2 3 24 24 H 1.08999 * 109.46726 * 304.96217 * 1 2 3 25 25 H 1.09002 * 113.76761 * 41.05750 * 7 6 4 26 26 H 1.08999 * 113.87408 * 269.67506 * 7 6 4 27 27 H 0.96701 * 114.00299 * 178.07717 * 9 8 7 28 28 H 0.97000 * 119.99510 * 180.02562 * 13 12 10 29 29 H 1.08993 * 113.76829 * 90.33998 * 18 6 4 30 30 H 1.08999 * 113.76876 * 318.94322 * 18 6 4 31 31 H 1.08999 * 115.55064 * 34.41696 * 19 2 1 32 32 H 1.09006 * 117.49616 * 359.97438 * 20 19 2 33 33 H 1.08990 * 117.49974 * 145.01820 * 20 19 2 34 34 H 1.08997 * 117.49241 * 214.97555 * 21 19 2 35 35 H 1.08997 * 117.49901 * 359.97438 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1487 -1.9176 -1.2287 6 7 2.3523 -0.0041 -2.3329 7 6 2.9444 -0.3418 -3.6419 8 6 2.2316 0.9158 -4.1712 9 8 0.9193 0.6633 -4.6774 10 6 3.0742 1.7414 -5.1091 11 1 4.0791 1.4276 -5.3500 12 6 2.5622 2.8972 -5.6594 13 7 1.3383 3.2790 -5.3663 14 14 3.6065 3.9202 -6.8223 15 1 2.8312 5.1042 -7.2721 16 1 4.8340 4.3711 -6.1186 17 1 3.9847 3.0989 -8.0003 18 6 2.2513 1.4175 -2.7160 19 6 2.0401 -0.7213 1.2492 20 6 2.7394 0.1230 2.3165 21 6 3.5551 -0.8263 1.4352 22 1 -0.3633 0.4348 -0.9311 23 1 -0.3632 -1.0239 0.0889 24 1 -0.3633 0.5889 0.8422 25 1 2.5679 -1.2720 -4.0675 26 1 4.0320 -0.2730 -3.6651 27 1 0.4568 1.4553 -4.9839 28 1 0.9780 4.0920 -5.7538 29 1 3.1351 2.0039 -2.4653 30 1 1.3214 1.8920 -2.4023 31 1 1.4319 -1.5595 1.5893 32 1 2.8364 1.1924 2.1284 33 1 2.5916 -0.1599 3.3586 34 1 3.9436 -1.7334 1.8981 35 1 4.1884 -0.3819 0.6674 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335973907.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:50 Heat of formation + Delta-G solvation = -52.441061 kcal Electronic energy + Delta-G solvation = -17557.442179 eV Core-core repulsion = 14749.539722 eV Total energy + Delta-G solvation = -2807.902457 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.35554 -39.55273 -37.81367 -35.81139 -34.13521 -33.36130 -30.23438 -27.33843 -27.00779 -25.34194 -23.28158 -22.51431 -21.18946 -19.73090 -19.23668 -18.02514 -17.33307 -16.86612 -16.35723 -15.99872 -15.89543 -15.41632 -14.93415 -14.42402 -14.27524 -13.80000 -13.56131 -13.39309 -13.16585 -12.85708 -12.77691 -12.72796 -12.41560 -12.24589 -12.21524 -12.06148 -11.47651 -11.24180 -11.11546 -10.75198 -10.57195 -10.20404 -9.54806 -8.26549 -6.43811 1.48148 1.50296 1.57470 1.65895 1.94632 2.40843 2.86024 2.96438 3.53359 3.55552 3.81625 3.90874 4.13504 4.16253 4.22476 4.32564 4.45937 4.52328 4.59556 4.74382 4.75877 4.81444 4.84358 4.89764 4.99814 5.07174 5.12629 5.22593 5.24705 5.30084 5.72554 5.92780 6.61240 6.87978 7.18818 7.30203 7.46956 8.79255 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036853 B = 0.006113 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.591500 B = 4579.234296 C = 4657.866478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.068 4.068 3 H 0.095 0.905 4 C 0.527 3.473 5 O -0.595 6.595 6 N -0.637 5.637 7 C 0.107 3.893 8 C 0.220 3.780 9 O -0.587 6.587 10 C -0.558 4.558 11 H 0.071 0.929 12 C 0.034 3.966 13 N -0.916 5.916 14 Si 0.969 3.031 15 H -0.282 1.282 16 H -0.267 1.267 17 H -0.276 1.276 18 C 0.093 3.907 19 C -0.146 4.146 20 C -0.147 4.147 21 C -0.189 4.189 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.388 0.612 28 H 0.276 0.724 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.226 0.585 11.095 11.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 H 0.113 0.887 4 C 0.319 3.681 5 O -0.477 6.477 6 N -0.370 5.370 7 C -0.015 4.015 8 C 0.178 3.822 9 O -0.400 6.400 10 C -0.596 4.596 11 H 0.089 0.911 12 C -0.167 4.167 13 N -0.557 5.557 14 Si 0.794 3.206 15 H -0.207 1.207 16 H -0.192 1.192 17 H -0.201 1.201 18 C -0.030 4.030 19 C -0.165 4.165 20 C -0.183 4.183 21 C -0.226 4.226 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.119 0.881 27 H 0.243 0.757 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.239 -0.609 11.385 11.469 hybrid contribution 0.262 0.884 -1.105 1.440 sum 1.501 0.276 10.280 10.393 Atomic orbital electron populations 1.21647 0.91326 1.02823 1.03032 1.20841 0.98595 0.99470 0.90049 0.88671 1.21049 0.76641 0.86906 0.83509 1.90580 1.57304 1.15849 1.83953 1.50277 1.60708 1.11783 1.14236 1.23436 0.98511 0.99010 0.80569 1.20106 0.81946 0.90395 0.89703 1.86047 1.30162 1.39884 1.83902 1.21707 1.00898 1.07833 1.29115 0.91057 1.25738 0.96256 0.97812 0.96860 1.69373 1.16089 1.25431 1.44794 0.85441 0.78717 0.77632 0.78839 1.20686 1.19204 1.20115 1.24084 1.01079 0.81303 0.96487 1.22012 0.95702 1.02531 0.96248 1.23172 1.01180 0.97542 0.96453 1.22910 0.93555 1.02688 1.03496 0.93507 0.92508 0.88360 0.92731 0.88108 0.75678 0.91363 0.89032 0.91375 0.87317 0.87834 0.86315 0.88159 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.16 71.98 0.66 -2.94 16 2 C -0.07 -2.10 2.73 -11.54 -0.03 -2.13 16 3 H 0.10 2.72 7.53 -2.39 -0.02 2.70 16 4 C 0.53 21.60 6.70 87.66 0.59 22.18 16 5 O -0.59 -28.15 17.19 -3.04 -0.05 -28.20 16 6 N -0.64 -27.21 3.61 -840.29 -3.03 -30.24 16 7 C 0.11 4.81 8.23 86.48 0.71 5.52 16 8 C 0.22 10.59 1.44 -10.88 -0.02 10.58 16 9 O -0.59 -30.87 13.48 -148.98 -2.01 -32.87 16 10 C -0.56 -27.72 8.62 25.60 0.22 -27.50 16 11 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 12 C 0.03 1.66 5.40 84.65 0.46 2.11 16 13 N -0.92 -45.68 11.09 21.45 0.24 -45.45 16 14 Si 0.97 38.92 29.54 68.60 2.03 40.95 16 15 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 16 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 17 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 18 C 0.09 3.93 7.74 86.48 0.67 4.60 16 19 C -0.15 -3.87 4.67 -10.79 -0.05 -3.92 16 20 C -0.15 -2.89 10.18 30.62 0.31 -2.58 16 21 C -0.19 -4.87 9.87 30.62 0.30 -4.57 16 22 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.10 4.10 8.09 -2.39 -0.02 4.08 16 27 H 0.39 20.48 6.46 -74.06 -0.48 20.01 16 28 H 0.28 13.07 8.31 -92.71 -0.77 12.30 16 29 H 0.09 3.63 8.09 -2.39 -0.02 3.61 16 30 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.11 2.85 8.11 -2.39 -0.02 2.83 16 32 H 0.10 1.88 8.05 -2.38 -0.02 1.86 16 33 H 0.12 1.78 8.14 -2.39 -0.02 1.77 16 34 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -59.13 298.55 1.59 -57.54 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: 0.60 Total: 36.92 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 3.82 Total: 1.36 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -2.79 Total: -75.68 kcal Atomic # 8 Polarization: -59.02 SS G_CDS: -2.06 Total: -61.08 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -59.13 1.59 -57.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335973907.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.097 kcal (2) G-P(sol) polarization free energy of solvation -59.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds