Wall clock time and date at job start Sun Mar 29 2020 22:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99794 * 2 1 4 4 H 1.48496 * 109.47653 * 85.01383 * 3 2 1 5 5 H 1.48502 * 109.47192 * 205.01622 * 3 2 1 6 6 H 1.48505 * 109.47416 * 325.01055 * 3 2 1 7 7 C 1.38811 * 120.00055 * 180.27581 * 2 1 3 8 8 H 1.08001 * 119.99594 * 188.77506 * 7 2 1 9 9 N 1.36934 * 119.99892 * 8.76612 * 7 2 1 10 10 C 1.47427 * 125.64898 * 10.52013 * 9 7 2 11 11 C 1.55129 * 104.71984 * 155.81558 * 10 9 7 12 12 C 1.55156 * 101.49027 * 37.29120 * 11 10 9 13 13 H 1.08997 * 110.71618 * 205.96976 * 12 11 10 14 14 N 1.46498 * 110.86916 * 82.76762 * 12 11 10 15 15 C 1.34775 * 120.00045 * 159.93631 * 14 12 11 16 16 O 1.21596 * 119.99443 * 359.97438 * 15 14 12 17 17 N 1.34772 * 120.00268 * 179.97438 * 15 14 12 18 18 C 1.46504 * 119.99707 * 179.97438 * 17 15 14 19 19 C 1.53007 * 117.49832 * 223.74519 * 18 17 15 20 20 C 1.53004 * 117.49556 * 155.09145 * 18 17 15 21 21 C 1.47019 * 125.64794 * 190.81940 * 9 7 2 22 22 H 0.96993 * 119.99995 * 359.97438 * 1 2 3 23 23 H 1.09002 * 110.36325 * 274.74155 * 10 9 7 24 24 H 1.08999 * 110.36530 * 37.06435 * 10 9 7 25 25 H 1.09007 * 111.18627 * 279.18401 * 11 10 9 26 26 H 1.09001 * 110.93761 * 155.29183 * 11 10 9 27 27 H 0.96999 * 119.99995 * 339.93770 * 14 12 11 28 28 H 0.96995 * 120.00146 * 0.02562 * 17 15 14 29 29 H 1.08996 * 115.55426 * 9.41538 * 18 17 15 30 30 H 1.08998 * 117.49555 * 0.02562 * 19 18 17 31 31 H 1.08997 * 117.49954 * 145.01965 * 19 18 17 32 32 H 1.08997 * 117.49604 * 214.98333 * 20 18 17 33 33 H 1.09004 * 117.49977 * 359.96977 * 20 18 17 34 34 H 1.09003 * 109.88459 * 300.44626 * 21 9 7 35 35 H 1.09003 * 109.88452 * 61.60765 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1074 1.3947 5 1 3.5964 1.4121 -0.5921 6 1 1.5043 2.6200 -0.8028 7 6 2.0103 -1.2021 -0.0058 8 1 3.0808 -1.2082 0.1369 9 7 1.3376 -2.3802 -0.1922 10 6 -0.0697 -2.5089 -0.6121 11 6 -0.1599 -3.9142 -1.2629 12 6 0.7866 -4.7385 -0.3507 13 1 1.1979 -5.5907 -0.8917 14 7 0.0897 -5.1823 0.8591 15 6 0.5721 -6.2189 1.5727 16 8 1.5854 -6.7860 1.2121 17 7 -0.0687 -6.6268 2.6860 18 6 0.4554 -7.7540 3.4613 19 6 -0.5477 -8.7976 3.9571 20 6 0.0919 -7.8198 4.9461 21 6 1.8974 -3.7261 -0.0007 22 1 -0.4850 0.8400 0.0004 23 1 -0.7308 -2.4453 0.2522 24 1 -0.3204 -1.7373 -1.3401 25 1 0.2045 -3.8969 -2.2900 26 1 -1.1787 -4.2993 -1.2185 27 1 -0.7188 -4.7301 1.1465 28 1 -0.8772 -6.1746 2.9735 29 1 1.4448 -8.1059 3.1693 30 1 -1.5974 -8.6457 3.7060 31 1 -0.2180 -9.8359 3.9916 32 1 0.8421 -8.2153 5.6308 33 1 -0.5368 -7.0243 5.3461 34 1 2.7518 -3.8698 -0.6622 35 1 2.2037 -3.8560 1.0373 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336333225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:50 Heat of formation + Delta-G solvation = 24.270061 kcal Electronic energy + Delta-G solvation = -17121.660926 eV Core-core repulsion = 14349.377664 eV Total energy + Delta-G solvation = -2772.283262 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.91603 -37.81886 -36.69410 -33.76286 -32.71683 -31.36201 -29.05255 -27.15218 -24.47668 -22.55611 -22.47499 -20.85068 -20.22413 -19.77066 -18.37548 -16.83072 -16.52656 -15.36193 -14.89093 -14.78944 -14.58838 -13.95638 -13.77289 -13.19300 -12.74885 -12.59755 -12.00085 -11.76531 -11.61561 -11.43184 -11.02872 -10.83423 -10.72001 -10.64090 -10.39448 -10.06987 -9.96444 -9.89592 -9.66574 -8.87793 -8.58232 -8.42802 -6.77908 -5.74520 -3.06087 2.81664 3.31569 3.40359 3.46309 3.48713 3.89574 4.38384 4.52061 4.66988 4.82767 4.87096 5.31318 5.44723 5.46739 5.50737 5.63632 5.77021 5.81996 5.88642 5.89624 6.27658 6.36485 6.47837 6.57066 6.61156 6.78870 7.04882 7.23727 7.46038 7.54467 7.77652 8.24061 8.28564 8.85283 9.21054 9.82629 10.50367 11.39040 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036986 B = 0.005146 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.865798 B = 5439.905587 C = 5693.127219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.075 0.925 9 N -0.603 5.603 10 C 0.173 3.827 11 C -0.155 4.155 12 C 0.151 3.849 13 H 0.087 0.913 14 N -0.725 5.725 15 C 0.709 3.291 16 O -0.594 6.594 17 N -0.722 5.722 18 C 0.107 3.893 19 C -0.199 4.199 20 C -0.194 4.194 21 C 0.125 3.875 22 H 0.252 0.748 23 H 0.025 0.975 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.396 0.604 28 H 0.396 0.604 29 H 0.138 0.862 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.031 0.969 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.298 -13.615 5.073 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.354 4.354 8 H 0.093 0.907 9 N -0.329 5.329 10 C 0.048 3.952 11 C -0.194 4.194 12 C 0.046 3.954 13 H 0.105 0.895 14 N -0.378 5.378 15 C 0.409 3.591 16 O -0.472 6.472 17 N -0.376 5.376 18 C 0.000 4.000 19 C -0.238 4.238 20 C -0.233 4.233 21 C -0.002 4.002 22 H 0.062 0.938 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.230 0.770 28 H 0.230 0.770 29 H 0.155 0.845 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.049 0.951 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.376 -13.883 4.690 15.038 hybrid contribution -0.432 1.375 0.520 1.532 sum -3.808 -12.508 5.210 14.074 Atomic orbital electron populations 1.69940 1.04949 1.25083 1.56918 1.24803 0.95641 0.97761 1.02244 0.86120 0.78803 0.83517 0.77458 1.21708 1.20576 1.21642 1.19055 0.91055 0.82822 1.42460 0.90676 1.44504 1.09204 0.99893 1.79320 1.21449 0.85974 0.90988 0.96776 1.23375 0.97966 0.99110 0.98946 1.21812 0.93396 0.96306 0.83901 0.89461 1.45126 1.30681 1.33731 1.28300 1.15860 0.82979 0.80506 0.79772 1.90889 1.25742 1.59426 1.71189 1.44479 1.30528 1.35589 1.26968 1.21357 0.98553 0.89073 0.91060 1.23456 0.99368 0.96614 1.04372 1.23403 1.04241 1.02524 0.93088 1.21730 0.94355 0.85866 0.98218 0.93806 0.95739 0.91162 0.90492 0.91639 0.76991 0.76992 0.84460 0.88691 0.88197 0.88006 0.88546 0.95074 0.95550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.67 55.49 0.59 -26.18 16 2 C -0.01 -0.23 5.41 -17.43 -0.09 -0.33 16 3 Si 0.91 22.19 29.56 -169.99 -5.03 17.17 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.39 10.24 -15.06 -0.15 -6.54 16 8 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 9 N -0.60 -15.51 3.39 -169.93 -0.58 -16.09 16 10 C 0.17 4.03 5.41 -2.41 -0.01 4.02 16 11 C -0.15 -2.76 6.66 -24.46 -0.16 -2.93 16 12 C 0.15 2.78 3.24 -66.10 -0.21 2.56 16 13 H 0.09 1.58 7.69 -51.93 -0.40 1.18 16 14 N -0.72 -11.84 5.12 -56.89 -0.29 -12.13 16 15 C 0.71 11.88 8.56 -86.92 -0.74 11.14 16 16 O -0.59 -12.09 15.63 5.28 0.08 -12.00 16 17 N -0.72 -9.22 5.57 -58.67 -0.33 -9.54 16 18 C 0.11 1.22 6.43 -67.92 -0.44 0.78 16 19 C -0.20 -1.72 10.46 -26.69 -0.28 -2.00 16 20 C -0.19 -1.70 10.46 -26.69 -0.28 -1.97 16 21 C 0.13 2.80 6.98 -3.07 -0.02 2.77 16 22 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.02 0.60 8.07 -51.93 -0.42 0.19 16 24 H 0.07 1.83 6.94 -51.93 -0.36 1.47 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.40 5.78 8.64 -40.82 -0.35 5.43 16 28 H 0.40 4.05 8.84 -40.82 -0.36 3.69 16 29 H 0.14 1.78 7.40 -51.93 -0.38 1.40 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.03 0.64 8.04 -51.93 -0.42 0.22 16 LS Contribution 293.89 15.07 4.43 4.43 Total: -1.00 -32.60 293.89 -8.72 -41.31 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.20 Total: 5.54 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -2.40 Total: 7.51 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -0.60 Total: -63.95 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.60 -8.72 -41.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336333225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.585 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds