Wall clock time and date at job start Sun Mar 29 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99794 * 2 1 4 4 H 1.48496 * 109.47653 * 85.01383 * 3 2 1 5 5 H 1.48502 * 109.47192 * 205.01622 * 3 2 1 6 6 H 1.48505 * 109.47416 * 325.01055 * 3 2 1 7 7 C 1.38811 * 120.00055 * 180.27581 * 2 1 3 8 8 H 1.08001 * 119.99594 * 188.77506 * 7 2 1 9 9 N 1.36934 * 119.99892 * 8.76612 * 7 2 1 10 10 C 1.47427 * 125.64898 * 10.52013 * 9 7 2 11 11 C 1.55129 * 104.71984 * 155.81558 * 10 9 7 12 12 C 1.55156 * 101.49027 * 37.29120 * 11 10 9 13 13 H 1.08997 * 110.71618 * 205.96976 * 12 11 10 14 14 N 1.46498 * 110.86916 * 82.76762 * 12 11 10 15 15 C 1.34775 * 120.00045 * 159.93631 * 14 12 11 16 16 O 1.21596 * 119.99443 * 359.97438 * 15 14 12 17 17 N 1.34772 * 120.00268 * 179.97438 * 15 14 12 18 18 C 1.46504 * 119.99707 * 179.97438 * 17 15 14 19 19 C 1.53007 * 117.49832 * 223.74519 * 18 17 15 20 20 C 1.53004 * 117.49556 * 155.09145 * 18 17 15 21 21 C 1.47019 * 125.64794 * 190.81940 * 9 7 2 22 22 H 0.96993 * 119.99995 * 359.97438 * 1 2 3 23 23 H 1.09002 * 110.36325 * 274.74155 * 10 9 7 24 24 H 1.08999 * 110.36530 * 37.06435 * 10 9 7 25 25 H 1.09007 * 111.18627 * 279.18401 * 11 10 9 26 26 H 1.09001 * 110.93761 * 155.29183 * 11 10 9 27 27 H 0.96999 * 119.99995 * 339.93770 * 14 12 11 28 28 H 0.96995 * 120.00146 * 0.02562 * 17 15 14 29 29 H 1.08996 * 115.55426 * 9.41538 * 18 17 15 30 30 H 1.08998 * 117.49555 * 0.02562 * 19 18 17 31 31 H 1.08997 * 117.49954 * 145.01965 * 19 18 17 32 32 H 1.08997 * 117.49604 * 214.98333 * 20 18 17 33 33 H 1.09004 * 117.49977 * 359.96977 * 20 18 17 34 34 H 1.09003 * 109.88459 * 300.44626 * 21 9 7 35 35 H 1.09003 * 109.88452 * 61.60765 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1074 1.3947 5 1 3.5964 1.4121 -0.5921 6 1 1.5043 2.6200 -0.8028 7 6 2.0103 -1.2021 -0.0058 8 1 3.0808 -1.2082 0.1369 9 7 1.3376 -2.3802 -0.1922 10 6 -0.0697 -2.5089 -0.6121 11 6 -0.1599 -3.9142 -1.2629 12 6 0.7866 -4.7385 -0.3507 13 1 1.1979 -5.5907 -0.8917 14 7 0.0897 -5.1823 0.8591 15 6 0.5721 -6.2189 1.5727 16 8 1.5854 -6.7860 1.2121 17 7 -0.0687 -6.6268 2.6860 18 6 0.4554 -7.7540 3.4613 19 6 -0.5477 -8.7976 3.9571 20 6 0.0919 -7.8198 4.9461 21 6 1.8974 -3.7261 -0.0007 22 1 -0.4850 0.8400 0.0004 23 1 -0.7308 -2.4453 0.2522 24 1 -0.3204 -1.7373 -1.3401 25 1 0.2045 -3.8969 -2.2900 26 1 -1.1787 -4.2993 -1.2185 27 1 -0.7188 -4.7301 1.1465 28 1 -0.8772 -6.1746 2.9735 29 1 1.4448 -8.1059 3.1693 30 1 -1.5974 -8.6457 3.7060 31 1 -0.2180 -9.8359 3.9916 32 1 0.8421 -8.2153 5.6308 33 1 -0.5368 -7.0243 5.3461 34 1 2.7518 -3.8698 -0.6622 35 1 2.2037 -3.8560 1.0373 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336333225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:49 Heat of formation + Delta-G solvation = 0.849389 kcal Electronic energy + Delta-G solvation = -17122.676522 eV Core-core repulsion = 14349.377664 eV Total energy + Delta-G solvation = -2773.298858 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.21994 -39.22872 -37.88997 -35.44062 -34.14066 -32.96568 -30.84377 -28.89517 -26.45268 -23.62228 -23.22634 -22.13389 -21.93730 -21.32747 -19.64871 -18.79171 -17.71875 -16.81831 -16.56691 -16.22448 -15.85867 -15.47538 -15.24383 -14.72251 -14.38604 -13.82244 -13.62228 -13.39041 -13.01156 -12.77695 -12.50003 -12.36123 -12.24917 -12.14749 -11.95774 -11.85846 -11.59489 -11.42757 -11.29627 -10.68167 -10.19993 -9.54622 -8.85417 -7.89373 -5.23167 1.46186 1.46972 1.57128 1.65513 2.09070 2.49309 3.06036 3.22744 3.31392 3.71012 3.80573 3.85310 4.08052 4.10801 4.13557 4.32440 4.66995 4.73396 4.78145 4.79935 4.94883 5.01592 5.05813 5.07739 5.24923 5.43819 5.57773 5.59956 5.64847 5.73744 6.01641 6.20991 7.07263 7.10181 7.58157 7.75471 8.41760 9.22344 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036986 B = 0.005146 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.865798 B = 5439.905587 C = 5693.127219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.056 4.056 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.273 1.273 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.621 5.621 10 C 0.178 3.822 11 C -0.131 4.131 12 C 0.165 3.835 13 H 0.097 0.903 14 N -0.720 5.720 15 C 0.705 3.295 16 O -0.634 6.634 17 N -0.707 5.707 18 C 0.069 3.931 19 C -0.178 4.178 20 C -0.178 4.178 21 C 0.124 3.876 22 H 0.250 0.750 23 H 0.007 0.993 24 H 0.038 0.962 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.406 0.594 28 H 0.410 0.590 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.029 0.971 35 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.176 -14.504 5.576 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.250 4.250 3 Si 0.804 3.196 4 H -0.214 1.214 5 H -0.198 1.198 6 H -0.215 1.215 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.348 5.348 10 C 0.053 3.947 11 C -0.170 4.170 12 C 0.059 3.941 13 H 0.115 0.885 14 N -0.374 5.374 15 C 0.405 3.595 16 O -0.515 6.515 17 N -0.361 5.361 18 C -0.038 4.038 19 C -0.217 4.217 20 C -0.216 4.216 21 C -0.002 4.002 22 H 0.059 0.941 23 H 0.025 0.975 24 H 0.056 0.944 25 H 0.107 0.893 26 H 0.119 0.881 27 H 0.242 0.758 28 H 0.246 0.754 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.047 0.953 35 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -4.291 -14.798 5.232 16.271 hybrid contribution -0.141 1.614 0.434 1.677 sum -4.431 -13.184 5.666 15.018 Atomic orbital electron populations 1.70110 1.06088 1.25551 1.57407 1.25575 0.96565 1.00738 1.02144 0.85117 0.77851 0.79348 0.77313 1.21439 1.19754 1.21465 1.19357 0.91325 0.84374 1.42764 0.91181 1.44770 1.10196 1.00400 1.79393 1.21306 0.84468 0.93357 0.95584 1.23220 0.99973 0.95084 0.98737 1.21571 0.92379 0.95444 0.84721 0.88512 1.44969 1.30786 1.33754 1.27922 1.16032 0.82710 0.80293 0.80500 1.90859 1.27586 1.60690 1.72406 1.44342 1.30472 1.35685 1.25618 1.21469 0.98889 0.90323 0.93094 1.23521 0.99069 0.96656 1.02449 1.23491 1.04131 1.02514 0.91467 1.21817 0.95881 0.85702 0.96831 0.94120 0.97458 0.94378 0.89349 0.88082 0.75848 0.75366 0.86685 0.87656 0.86953 0.86851 0.87679 0.95308 0.97757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.52 10.67 21.65 0.23 -55.28 16 2 C -0.06 -3.21 5.41 84.86 0.46 -2.75 16 3 Si 0.98 45.90 29.56 68.60 2.03 47.93 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.25 -14.35 10.24 84.03 0.86 -13.49 16 8 H 0.07 3.98 7.84 -2.91 -0.02 3.96 16 9 N -0.62 -32.43 3.39 -691.55 -2.35 -34.78 16 10 C 0.18 8.30 5.41 86.93 0.47 8.77 16 11 C -0.13 -4.45 6.66 32.06 0.21 -4.23 16 12 C 0.17 5.88 3.24 46.18 0.15 6.03 16 13 H 0.10 3.35 7.69 -2.39 -0.02 3.33 16 14 N -0.72 -22.73 5.12 -452.15 -2.32 -25.04 16 15 C 0.70 23.16 8.56 179.06 1.53 24.69 16 16 O -0.63 -25.87 15.63 -4.02 -0.06 -25.93 16 17 N -0.71 -17.18 5.57 -457.79 -2.55 -19.73 16 18 C 0.07 1.49 6.43 44.99 0.29 1.78 16 19 C -0.18 -2.61 10.46 30.62 0.32 -2.29 16 20 C -0.18 -2.67 10.46 30.62 0.32 -2.35 16 21 C 0.12 5.60 6.98 86.73 0.61 6.21 16 22 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 23 H 0.01 0.37 8.07 -2.39 -0.02 0.35 16 24 H 0.04 2.01 6.94 -2.39 -0.02 1.99 16 25 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 26 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.41 11.21 8.64 -92.71 -0.80 10.41 16 28 H 0.41 7.59 8.84 -92.71 -0.82 6.77 16 29 H 0.12 3.02 7.40 -2.39 -0.02 3.00 16 30 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.00 0.22 8.04 -2.39 -0.02 0.20 16 Total: -1.00 -71.31 293.89 -0.32 -71.62 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -0.52 Total: 18.84 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: 5.22 Total: 22.36 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -6.98 Total: -134.83 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.06 Total: -25.93 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -71.31 -0.32 -71.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336333225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.472 kcal (2) G-P(sol) polarization free energy of solvation -71.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds