Wall clock time and date at job start Sun Mar 29 2020 21:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.27631 * 2 1 4 4 C 1.54944 * 110.39661 * 237.84970 * 2 1 3 5 5 C 1.55306 * 100.94369 * 204.60163 * 4 2 1 6 6 H 1.09002 * 111.01980 * 275.86110 * 5 4 2 7 7 C 1.50707 * 110.84736 * 152.32406 * 5 4 2 8 8 O 1.21287 * 119.99834 * 5.71441 * 7 5 4 9 9 N 1.34773 * 119.99613 * 185.71421 * 7 5 4 10 10 C 1.37103 * 119.99544 * 180.02562 * 9 7 5 11 11 H 1.08006 * 119.99749 * 222.72180 * 10 9 7 12 12 C 1.38947 * 120.00167 * 42.99297 * 10 9 7 13 13 N 1.31410 * 120.00146 * 18.78105 * 12 10 9 14 14 Si 1.86795 * 119.99991 * 198.77822 * 12 10 9 15 15 H 1.48507 * 109.47091 * 90.00095 * 14 12 10 16 16 H 1.48498 * 109.47072 * 210.00006 * 14 12 10 17 17 H 1.48501 * 109.47523 * 330.00227 * 14 12 10 18 18 C 1.46494 * 120.00517 * 359.97438 * 9 7 5 19 19 C 1.52996 * 117.50415 * 183.42253 * 18 9 7 20 20 C 1.52998 * 60.00361 * 252.50962 * 19 18 9 21 21 C 1.54382 * 102.25360 * 34.13375 * 5 4 2 22 22 O 1.43239 * 107.58649 * 338.64078 * 21 5 4 23 23 H 1.08996 * 109.47383 * 299.36623 * 1 2 3 24 24 H 1.09008 * 109.46415 * 59.36500 * 1 2 3 25 25 H 1.08993 * 109.47308 * 179.35959 * 1 2 3 26 26 H 1.09003 * 111.12671 * 86.67967 * 4 2 1 27 27 H 1.09005 * 111.12598 * 322.52170 * 4 2 1 28 28 H 0.96995 * 120.00566 * 174.90489 * 13 12 10 29 29 H 1.09006 * 115.54757 * 329.13448 * 18 9 7 30 30 H 1.09012 * 117.49564 * 0.02562 * 19 18 9 31 31 H 1.09001 * 117.50317 * 145.01480 * 19 18 9 32 32 H 1.08997 * 117.49555 * 252.51059 * 20 19 18 33 33 H 1.09001 * 117.49618 * 107.48464 * 20 19 18 34 34 H 1.08993 * 109.83095 * 98.15707 * 21 5 4 35 35 H 1.08995 * 109.83210 * 219.13216 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0700 -0.7728 -1.2296 5 6 3.4722 -1.2002 -0.7167 6 1 4.2014 -0.4032 -0.8623 7 6 3.9262 -2.4692 -1.3912 8 8 3.2639 -2.9507 -2.2859 9 7 5.0681 -3.0687 -1.0001 10 6 5.4814 -4.2228 -1.6141 11 1 5.8719 -5.0385 -1.0237 12 6 5.4031 -4.3409 -2.9963 13 7 5.2941 -3.2647 -3.7426 14 14 5.4527 -6.0293 -3.7938 15 1 4.0707 -6.5584 -3.9191 16 1 6.0658 -5.9221 -5.1420 17 1 6.2608 -6.9498 -2.9542 18 6 5.8684 -2.4867 0.0801 19 6 7.1939 -3.1690 0.4240 20 6 6.0010 -3.2924 1.3741 21 6 3.2125 -1.4395 0.7862 22 8 2.0286 -0.7157 1.1414 23 1 -0.3634 0.5039 0.8956 24 1 -0.3632 0.5237 -0.8843 25 1 -0.3633 -1.0275 -0.0115 26 1 2.1517 -0.1203 -2.0989 27 1 1.4506 -1.6422 -1.4502 28 1 5.3138 -3.3409 -4.7094 29 1 5.8238 -1.4009 0.1657 30 1 7.4708 -4.0509 -0.1540 31 1 8.0218 -2.5323 0.7356 32 1 6.0442 -2.7367 2.3108 33 1 5.4929 -4.2556 1.4215 34 1 3.0649 -2.5034 0.9711 35 1 4.0576 -1.0752 1.3701 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336348508.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:25 Heat of formation + Delta-G solvation = -44.866414 kcal Electronic energy + Delta-G solvation = -18067.341638 eV Core-core repulsion = 15259.767643 eV Total energy + Delta-G solvation = -2807.573995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.64626 -37.95129 -36.03135 -32.91031 -31.84333 -31.56900 -30.46627 -26.03277 -24.88025 -22.46764 -21.72739 -20.97445 -20.75808 -18.98429 -16.86101 -16.28560 -16.03759 -15.17770 -14.67579 -14.33120 -13.86143 -13.82640 -13.62754 -13.01449 -12.59095 -12.25978 -12.13905 -11.76862 -11.45707 -11.16170 -10.95620 -10.92563 -10.81375 -10.57101 -10.50166 -10.37373 -10.15983 -9.95864 -9.76165 -9.17587 -8.72659 -8.02395 -7.05545 -6.12889 -3.87632 3.29718 3.36633 3.39928 4.00208 4.17998 4.24888 4.70344 4.76738 4.96849 5.13739 5.24056 5.38358 5.46655 5.54564 5.58715 5.65086 5.75049 5.76474 5.92242 6.00472 6.08745 6.18176 6.20809 6.21971 6.34145 6.45551 6.46581 6.70094 6.73374 6.90966 7.34288 7.60337 8.24752 9.03789 9.13833 9.64201 10.26804 10.96248 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025520 B = 0.009093 C = 0.007230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.925863 B = 3078.491481 C = 3871.867834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 H 0.065 0.935 4 C -0.125 4.125 5 C -0.139 4.139 6 H 0.090 0.910 7 C 0.492 3.508 8 O -0.528 6.528 9 N -0.426 5.426 10 C -0.350 4.350 11 H 0.079 0.921 12 C 0.073 3.927 13 N -0.832 5.832 14 Si 0.913 3.087 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.073 3.927 19 C -0.174 4.174 20 C -0.207 4.207 21 C 0.069 3.931 22 O -0.387 6.387 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.264 0.736 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.093 5.642 7.449 9.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 H 0.083 0.917 4 C -0.163 4.163 5 C -0.161 4.161 6 H 0.108 0.892 7 C 0.279 3.721 8 O -0.405 6.405 9 N -0.147 5.147 10 C -0.477 4.477 11 H 0.096 0.904 12 C -0.138 4.138 13 N -0.466 5.466 14 Si 0.741 3.259 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.033 4.033 19 C -0.212 4.212 20 C -0.246 4.246 21 C -0.008 4.008 22 O -0.307 6.307 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.617 5.451 6.959 9.219 hybrid contribution 0.454 -0.639 -0.665 1.028 sum -2.163 4.813 6.294 8.213 Atomic orbital electron populations 1.21859 0.94118 1.02793 1.01779 1.22978 0.94575 0.95315 0.85580 0.91686 1.23096 0.95203 1.00883 0.97128 1.22796 0.98375 0.99427 0.95477 0.89212 1.19329 0.81636 0.85696 0.85474 1.90526 1.54654 1.65173 1.30122 1.42767 1.17228 1.23587 1.31085 1.18883 1.47343 0.91961 0.89494 0.90351 1.25225 0.94490 0.97387 0.96684 1.69827 1.42976 1.28577 1.05195 0.86201 0.78355 0.83159 0.78236 1.20328 1.21306 1.19886 1.21710 0.96579 0.94562 0.90436 1.23082 0.91150 1.04142 1.02802 1.23345 1.03896 1.03133 0.94225 1.23128 0.87113 0.96917 0.93638 1.88346 1.43066 1.65060 1.34187 0.92319 0.91449 0.91889 0.90245 0.89213 0.92596 0.88110 0.87479 0.89781 0.89682 0.89026 0.90920 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.63 37.16 0.36 -1.54 16 2 C 0.07 1.11 4.07 -25.71 -0.10 1.00 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -2.24 5.65 -24.48 -0.14 -2.38 16 5 C -0.14 -2.72 2.47 -89.82 -0.22 -2.94 16 6 H 0.09 1.65 7.70 -51.93 -0.40 1.25 16 7 C 0.49 12.39 6.23 -10.98 -0.07 12.32 16 8 O -0.53 -15.48 13.42 5.55 0.07 -15.40 16 9 N -0.43 -10.54 2.84 -107.73 -0.31 -10.85 16 10 C -0.35 -9.50 7.98 -14.93 -0.12 -9.62 16 11 H 0.08 2.06 7.19 -52.48 -0.38 1.68 16 12 C 0.07 2.04 4.37 -17.47 -0.08 1.97 16 13 N -0.83 -24.62 11.66 55.50 0.65 -23.97 16 14 Si 0.91 21.95 29.60 -169.99 -5.03 16.92 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 18 C 0.07 1.44 4.54 -67.93 -0.31 1.14 16 19 C -0.17 -3.10 9.79 -26.73 -0.26 -3.36 16 20 C -0.21 -3.48 10.36 -26.73 -0.28 -3.75 16 21 C 0.07 1.21 6.09 37.88 0.23 1.44 16 22 O -0.39 -6.69 11.04 -35.23 -0.39 -7.08 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.09 1.79 7.39 -51.93 -0.38 1.41 16 28 H 0.26 7.49 8.32 -40.82 -0.34 7.15 16 29 H 0.10 1.80 6.47 -51.93 -0.34 1.46 16 30 H 0.11 2.12 6.69 -51.92 -0.35 1.77 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 34 H 0.07 1.38 7.81 -51.93 -0.41 0.98 16 35 H 0.07 1.06 7.23 -51.93 -0.38 0.69 16 LS Contribution 284.98 15.07 4.29 4.29 Total: -1.00 -32.07 284.98 -6.84 -38.91 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.14 Total: 2.92 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.99 Total: -5.73 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.34 Total: -34.82 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.31 Total: -22.48 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.07 -6.84 -38.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336348508.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.961 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds