Wall clock time and date at job start Sun Mar 29 2020 21:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.27631 * 2 1 4 4 C 1.54944 * 110.39661 * 237.84970 * 2 1 3 5 5 C 1.55306 * 100.94369 * 204.60163 * 4 2 1 6 6 H 1.09002 * 111.01980 * 275.86110 * 5 4 2 7 7 C 1.50707 * 110.84736 * 152.32406 * 5 4 2 8 8 O 1.21287 * 119.99834 * 5.71441 * 7 5 4 9 9 N 1.34773 * 119.99613 * 185.71421 * 7 5 4 10 10 C 1.37103 * 119.99544 * 180.02562 * 9 7 5 11 11 H 1.08006 * 119.99749 * 222.72180 * 10 9 7 12 12 C 1.38947 * 120.00167 * 42.99297 * 10 9 7 13 13 N 1.31410 * 120.00146 * 18.78105 * 12 10 9 14 14 Si 1.86795 * 119.99991 * 198.77822 * 12 10 9 15 15 H 1.48507 * 109.47091 * 90.00095 * 14 12 10 16 16 H 1.48498 * 109.47072 * 210.00006 * 14 12 10 17 17 H 1.48501 * 109.47523 * 330.00227 * 14 12 10 18 18 C 1.46494 * 120.00517 * 359.97438 * 9 7 5 19 19 C 1.52996 * 117.50415 * 183.42253 * 18 9 7 20 20 C 1.52998 * 60.00361 * 252.50962 * 19 18 9 21 21 C 1.54382 * 102.25360 * 34.13375 * 5 4 2 22 22 O 1.43239 * 107.58649 * 338.64078 * 21 5 4 23 23 H 1.08996 * 109.47383 * 299.36623 * 1 2 3 24 24 H 1.09008 * 109.46415 * 59.36500 * 1 2 3 25 25 H 1.08993 * 109.47308 * 179.35959 * 1 2 3 26 26 H 1.09003 * 111.12671 * 86.67967 * 4 2 1 27 27 H 1.09005 * 111.12598 * 322.52170 * 4 2 1 28 28 H 0.96995 * 120.00566 * 174.90489 * 13 12 10 29 29 H 1.09006 * 115.54757 * 329.13448 * 18 9 7 30 30 H 1.09012 * 117.49564 * 0.02562 * 19 18 9 31 31 H 1.09001 * 117.50317 * 145.01480 * 19 18 9 32 32 H 1.08997 * 117.49555 * 252.51059 * 20 19 18 33 33 H 1.09001 * 117.49618 * 107.48464 * 20 19 18 34 34 H 1.08993 * 109.83095 * 98.15707 * 21 5 4 35 35 H 1.08995 * 109.83210 * 219.13216 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0700 -0.7728 -1.2296 5 6 3.4722 -1.2002 -0.7167 6 1 4.2014 -0.4032 -0.8623 7 6 3.9262 -2.4692 -1.3912 8 8 3.2639 -2.9507 -2.2859 9 7 5.0681 -3.0687 -1.0001 10 6 5.4814 -4.2228 -1.6141 11 1 5.8719 -5.0385 -1.0237 12 6 5.4031 -4.3409 -2.9963 13 7 5.2941 -3.2647 -3.7426 14 14 5.4527 -6.0293 -3.7938 15 1 4.0707 -6.5584 -3.9191 16 1 6.0658 -5.9221 -5.1420 17 1 6.2608 -6.9498 -2.9542 18 6 5.8684 -2.4867 0.0801 19 6 7.1939 -3.1690 0.4240 20 6 6.0010 -3.2924 1.3741 21 6 3.2125 -1.4395 0.7862 22 8 2.0286 -0.7157 1.1414 23 1 -0.3634 0.5039 0.8956 24 1 -0.3632 0.5237 -0.8843 25 1 -0.3633 -1.0275 -0.0115 26 1 2.1517 -0.1203 -2.0989 27 1 1.4506 -1.6422 -1.4502 28 1 5.3138 -3.3409 -4.7094 29 1 5.8238 -1.4009 0.1657 30 1 7.4708 -4.0509 -0.1540 31 1 8.0218 -2.5323 0.7356 32 1 6.0442 -2.7367 2.3108 33 1 5.4929 -4.2556 1.4215 34 1 3.0649 -2.5034 0.9711 35 1 4.0576 -1.0752 1.3701 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336348508.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:25 Heat of formation + Delta-G solvation = -65.981162 kcal Electronic energy + Delta-G solvation = -18068.257243 eV Core-core repulsion = 15259.767643 eV Total energy + Delta-G solvation = -2808.489600 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.21151 -39.53542 -37.74616 -34.85241 -33.32254 -33.07636 -32.17314 -27.59273 -26.56805 -24.12873 -23.11874 -22.56303 -22.05830 -20.79420 -18.46393 -18.02069 -17.59632 -16.69482 -16.60117 -15.88623 -15.51236 -15.32610 -15.17114 -14.41339 -14.31808 -13.82998 -13.40899 -13.31112 -12.97225 -12.88709 -12.80169 -12.61832 -12.26176 -12.12728 -12.09124 -11.90287 -11.75811 -11.60876 -11.22263 -10.75468 -10.47672 -9.95951 -9.00107 -8.22481 -5.99533 1.33956 1.42540 1.47090 2.20199 2.36706 2.79597 3.06183 3.11464 3.30232 3.54600 3.82716 3.97205 4.09546 4.14025 4.22327 4.28912 4.36892 4.46160 4.54092 4.72633 4.72985 4.87272 4.90707 4.99072 5.04925 5.07753 5.21676 5.28580 5.33090 5.45562 5.49753 6.04221 6.17942 7.00903 7.17735 7.67676 8.33115 8.86270 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025520 B = 0.009093 C = 0.007230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.925863 B = 3078.491481 C = 3871.867834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.077 3.923 3 H 0.093 0.907 4 C -0.126 4.126 5 C -0.134 4.134 6 H 0.106 0.894 7 C 0.476 3.524 8 O -0.585 6.585 9 N -0.440 5.440 10 C -0.358 4.358 11 H 0.079 0.921 12 C 0.021 3.979 13 N -0.870 5.870 14 Si 0.969 3.031 15 H -0.293 1.293 16 H -0.280 1.280 17 H -0.253 1.253 18 C 0.043 3.957 19 C -0.171 4.171 20 C -0.179 4.179 21 C 0.081 3.919 22 O -0.394 6.394 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.047 0.953 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.259 0.741 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 6.873 9.494 11.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.020 3.980 3 H 0.110 0.890 4 C -0.164 4.164 5 C -0.156 4.156 6 H 0.124 0.876 7 C 0.265 3.735 8 O -0.466 6.466 9 N -0.160 5.160 10 C -0.485 4.485 11 H 0.097 0.903 12 C -0.186 4.186 13 N -0.505 5.505 14 Si 0.794 3.206 15 H -0.220 1.220 16 H -0.206 1.206 17 H -0.177 1.177 18 C -0.062 4.062 19 C -0.209 4.209 20 C -0.218 4.218 21 C 0.005 3.995 22 O -0.315 6.315 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.142 0.858 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.041 6.681 9.052 11.434 hybrid contribution 0.286 -1.025 -1.227 1.624 sum -1.755 5.656 7.826 9.814 Atomic orbital electron populations 1.21882 0.92376 1.02471 1.03621 1.23151 0.96011 0.95655 0.83161 0.88964 1.23085 0.94105 1.00299 0.98936 1.22729 0.99354 0.96809 0.96659 0.87559 1.20270 0.81232 0.87082 0.84957 1.90479 1.56290 1.67141 1.32685 1.42989 1.17831 1.23283 1.31897 1.19140 1.46312 0.93367 0.89727 0.90288 1.26033 0.94565 1.00439 0.97523 1.69931 1.45236 1.30418 1.04920 0.85328 0.77593 0.79681 0.77965 1.21956 1.20566 1.17707 1.22021 0.97666 0.96015 0.90448 1.23144 0.91820 1.03357 1.02548 1.23355 1.01914 1.01986 0.94513 1.22993 0.88235 0.96096 0.92217 1.88338 1.42989 1.65267 1.34873 0.90561 0.89517 0.93349 0.89702 0.92200 0.93166 0.85769 0.90120 0.86334 0.85554 0.90782 0.93057 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.63 71.98 0.69 -2.72 16 2 C 0.08 2.15 4.07 31.26 0.13 2.28 16 3 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.13 -4.48 5.65 32.05 0.18 -4.30 16 5 C -0.13 -5.14 2.47 -10.28 -0.03 -5.16 16 6 H 0.11 3.71 7.70 -2.39 -0.02 3.69 16 7 C 0.48 24.44 6.23 87.66 0.55 24.98 16 8 O -0.58 -35.78 13.42 -3.05 -0.04 -35.82 16 9 N -0.44 -21.92 2.84 -613.13 -1.74 -23.67 16 10 C -0.36 -19.79 7.98 84.04 0.67 -19.12 16 11 H 0.08 4.22 7.19 -2.91 -0.02 4.20 16 12 C 0.02 1.19 4.37 84.93 0.37 1.56 16 13 N -0.87 -53.14 11.66 21.66 0.25 -52.89 16 14 Si 0.97 46.14 29.60 68.60 2.03 48.17 16 15 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.25 -11.06 7.11 99.48 0.71 -10.35 16 18 C 0.04 1.62 4.54 44.99 0.20 1.83 16 19 C -0.17 -5.70 9.79 30.59 0.30 -5.40 16 20 C -0.18 -5.49 10.36 30.60 0.32 -5.17 16 21 C 0.08 2.69 6.09 72.45 0.44 3.13 16 22 O -0.39 -12.66 11.04 -148.98 -1.64 -14.30 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 24 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.06 2.48 7.39 -2.38 -0.02 2.46 16 28 H 0.26 15.27 8.32 -92.71 -0.77 14.50 16 29 H 0.12 4.03 6.47 -2.38 -0.02 4.01 16 30 H 0.08 3.13 6.69 -2.38 -0.02 3.12 16 31 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.05 1.91 7.81 -2.39 -0.02 1.89 16 35 H 0.10 2.66 7.23 -2.39 -0.02 2.64 16 Total: -1.00 -72.31 284.98 3.75 -68.56 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 1.07 Total: 18.02 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 3.83 Total: -8.08 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -1.49 Total: -76.56 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -1.69 Total: -50.12 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -72.31 3.75 -68.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336348508.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.582 kcal (2) G-P(sol) polarization free energy of solvation -72.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds