Wall clock time and date at job start Sun Mar 29 2020 22:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 120.00062 * 2 1 4 4 C 1.50696 * 109.47193 * 270.00628 * 3 2 1 5 5 H 1.08006 * 120.00428 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00247 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00269 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99412 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46871 * 90.00748 * 8 6 4 10 10 H 1.48506 * 109.46654 * 210.00059 * 8 6 4 11 11 H 1.48489 * 109.47572 * 330.00260 * 8 6 4 12 12 C 1.34777 * 119.99879 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99690 * 179.97438 * 12 2 1 14 14 C 1.50691 * 120.00321 * 359.97438 * 12 2 1 15 15 H 1.08999 * 115.57145 * 325.82014 * 14 12 2 16 16 C 1.53252 * 117.57874 * 111.70894 * 14 12 2 17 17 C 1.51799 * 117.53452 * 180.02562 * 14 12 2 18 18 C 1.54450 * 121.91908 * 141.19216 * 17 14 12 19 19 C 1.55159 * 100.64791 * 183.62582 * 18 17 14 20 20 O 1.43750 * 105.38398 * 35.27948 * 19 18 17 21 21 C 1.43547 * 109.96643 * 335.66662 * 20 19 18 22 22 H 1.09009 * 109.46781 * 269.99566 * 1 2 3 23 23 H 1.08996 * 109.47547 * 29.99553 * 1 2 3 24 24 H 1.09002 * 109.46973 * 149.99826 * 1 2 3 25 25 H 1.09006 * 109.46916 * 30.00111 * 3 2 1 26 26 H 1.08992 * 109.47358 * 150.00193 * 3 2 1 27 27 H 0.96999 * 120.00148 * 179.97438 * 7 6 4 28 28 H 1.08999 * 117.53114 * 359.97438 * 16 14 12 29 29 H 1.09001 * 117.52930 * 214.77581 * 16 14 12 30 30 H 1.09005 * 111.24805 * 65.77302 * 18 17 14 31 31 H 1.09000 * 111.17585 * 301.45145 * 18 17 14 32 32 H 1.09002 * 110.28043 * 276.27221 * 19 18 17 33 33 H 1.09001 * 110.27612 * 154.27948 * 19 18 17 34 34 H 1.09007 * 109.89675 * 121.99206 * 21 20 19 35 35 H 1.09001 * 109.89805 * 243.20717 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2418 6 6 3.1268 2.8776 -1.6728 7 7 3.3463 3.2570 -2.9126 8 14 3.7339 3.9287 -0.2528 9 1 5.1071 3.5068 0.1235 10 1 3.7498 5.3554 -0.6647 11 1 2.8275 3.7595 0.9112 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3855 -2.4723 -0.0005 15 1 0.4460 -2.4732 0.5522 16 6 1.4654 -3.3377 -1.2628 17 6 2.2004 -3.7530 -0.0005 18 6 1.7768 -4.9904 0.8211 19 6 2.9716 -5.9408 0.5445 20 8 4.1265 -5.0886 0.4655 21 6 3.7299 -3.7582 0.1002 22 1 -0.3633 -0.0001 1.0278 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0284 0.5139 26 1 3.1499 1.1385 0.5138 27 1 3.8232 4.0829 -3.0899 28 1 2.0628 -2.9627 -2.0938 29 1 0.5785 -3.9076 -1.5399 30 1 0.8437 -5.4122 0.4474 31 1 1.7013 -4.7516 1.8819 32 1 2.8252 -6.4671 -0.3988 33 1 3.0837 -6.6542 1.3610 34 1 4.0537 -3.0516 0.8645 35 1 4.1660 -3.4923 -0.8627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336353599.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:08 Heat of formation + Delta-G solvation = -48.048228 kcal Electronic energy + Delta-G solvation = -17425.139766 eV Core-core repulsion = 14617.427796 eV Total energy + Delta-G solvation = -2807.711969 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.30861 -38.51079 -35.75551 -34.85619 -32.53083 -30.39787 -28.75537 -27.34306 -25.97231 -24.12577 -22.58379 -21.74549 -19.76898 -18.25901 -16.97565 -16.67999 -16.08419 -15.87891 -15.23114 -14.79041 -14.46670 -14.15399 -13.58795 -13.13686 -12.87940 -12.55134 -12.43068 -12.31152 -12.10673 -11.92939 -11.49397 -11.47772 -10.97208 -10.90877 -10.54963 -10.38793 -10.14566 -9.99759 -9.56411 -9.33977 -8.94864 -8.60447 -7.73361 -6.10283 -4.09315 2.99732 3.28286 3.34178 3.36239 3.58188 3.94835 4.03628 4.32576 4.38397 4.69843 4.82656 4.91855 5.13629 5.17443 5.25810 5.40603 5.41965 5.59880 5.63638 5.70042 5.82026 5.83984 5.87599 6.03288 6.08901 6.15066 6.38257 6.67084 6.91841 7.10115 7.30671 7.58845 8.20732 8.44844 8.89617 8.95341 9.49866 11.03106 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.037188 B = 0.006043 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.744779 B = 4632.189384 C = 4891.032245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.593 5.593 3 C 0.215 3.785 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.534 3.466 13 O -0.536 6.536 14 C -0.164 4.164 15 H 0.122 0.878 16 C -0.132 4.132 17 C -0.138 4.138 18 C -0.120 4.120 19 C 0.055 3.945 20 O -0.390 6.390 21 C 0.096 3.904 22 H 0.044 0.956 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.030 0.970 26 H 0.037 0.963 27 H 0.265 0.735 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.757 -14.334 7.382 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.324 5.324 3 C 0.095 3.905 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.321 3.679 13 O -0.414 6.414 14 C -0.185 4.185 15 H 0.140 0.860 16 C -0.170 4.170 17 C -0.139 4.139 18 C -0.157 4.157 19 C -0.021 4.021 20 O -0.310 6.310 21 C 0.020 3.980 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.822 -14.202 7.312 17.370 hybrid contribution -0.152 0.872 0.474 1.004 sum -6.974 -13.330 7.787 16.940 Atomic orbital electron populations 1.21668 0.80890 1.03075 1.00370 1.47753 1.06347 1.06895 1.71436 1.19684 0.92470 0.79932 0.98430 1.21316 1.37053 1.07192 0.91209 0.90791 1.24856 0.95198 0.97342 0.95586 1.69892 1.41431 1.23580 1.18670 0.86845 0.80157 0.79761 0.82892 1.19861 1.21036 1.19095 1.19388 0.87391 0.83992 0.77146 1.90648 1.13663 1.86866 1.50244 1.22186 1.01392 0.90483 1.04448 0.85994 1.22933 1.02305 1.00621 0.91114 1.22091 0.95705 0.94918 1.01182 1.22744 0.99011 0.93644 1.00333 1.23282 0.84823 0.93210 1.00831 1.88483 1.30590 1.20808 1.91135 1.22557 0.90250 0.83068 1.02086 0.93735 0.90546 0.91963 0.95191 0.94496 0.92532 0.87558 0.87708 0.89906 0.89904 0.92351 0.90079 0.88977 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.01 59.85 0.60 1.87 16 2 N -0.59 -12.18 2.86 -182.95 -0.52 -12.71 16 3 C 0.22 5.27 4.23 -5.19 -0.02 5.25 16 4 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 5 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 8 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 9 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 12 C 0.53 10.77 7.46 -10.99 -0.08 10.69 16 13 O -0.54 -12.84 13.45 5.56 0.07 -12.76 16 14 C -0.16 -2.39 4.70 -92.26 -0.43 -2.83 16 15 H 0.12 1.43 7.26 -51.93 -0.38 1.06 16 16 C -0.13 -1.73 10.04 -27.18 -0.27 -2.00 16 17 C -0.14 -1.90 2.28 -154.79 -0.35 -2.25 16 18 C -0.12 -1.25 6.99 -24.83 -0.17 -1.42 16 19 C 0.06 0.61 7.78 38.30 0.30 0.91 16 20 O -0.39 -6.08 11.38 -35.23 -0.40 -6.48 16 21 C 0.10 1.59 6.00 37.31 0.22 1.81 16 22 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 23 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 24 H 0.06 0.79 6.64 -51.93 -0.34 0.44 16 25 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 26 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 28 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.71 6.85 -51.93 -0.36 1.35 16 35 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 LS Contribution 289.03 15.07 4.36 4.36 Total: -1.00 -33.78 289.03 -6.24 -40.02 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.19 Total: -0.93 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.66 Total: -1.50 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.25 Total: -39.65 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.33 Total: -19.24 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.78 -6.24 -40.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336353599.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.027 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds