Wall clock time and date at job start Sun Mar 29 2020 22:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46495 * 119.99782 * 2 1 4 4 C 1.50703 * 109.47395 * 89.99766 * 3 2 1 5 5 H 1.07994 * 119.99603 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99838 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00380 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99848 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47261 * 239.99776 * 8 6 4 11 11 H 1.48500 * 109.47454 * 119.99769 * 8 6 4 12 12 C 1.34779 * 120.00109 * 179.97438 * 2 1 3 13 13 O 1.21276 * 119.99641 * 180.02562 * 12 2 1 14 14 C 1.50697 * 119.99999 * 0.02562 * 12 2 1 15 15 H 1.09007 * 115.56670 * 34.37893 * 14 12 2 16 16 C 1.53186 * 117.52116 * 248.60617 * 14 12 2 17 17 C 1.52101 * 59.76889 * 252.57661 * 16 14 12 18 18 C 1.53710 * 121.74111 * 111.09749 * 17 16 14 19 19 C 1.54691 * 103.69607 * 143.46978 * 18 17 16 20 20 O 1.44492 * 104.86909 * 23.85016 * 19 18 17 21 21 C 1.44638 * 105.46547 * 320.01875 * 20 19 18 22 22 H 1.08989 * 109.47094 * 90.00527 * 1 2 3 23 23 H 1.09002 * 109.46932 * 210.00276 * 1 2 3 24 24 H 1.09000 * 109.47143 * 330.00012 * 1 2 3 25 25 H 1.09005 * 109.47411 * 329.99700 * 3 2 1 26 26 H 1.08998 * 109.46900 * 209.99779 * 3 2 1 27 27 H 0.97001 * 119.99667 * 0.02562 * 7 6 4 28 28 H 1.08997 * 117.52440 * 0.02562 * 16 14 12 29 29 H 1.09007 * 117.52314 * 145.10289 * 16 14 12 30 30 H 1.09001 * 110.57896 * 262.02804 * 18 17 16 31 31 H 1.09011 * 110.57408 * 24.76767 * 18 17 16 32 32 H 1.09006 * 110.36171 * 142.69715 * 19 18 17 33 33 H 1.09004 * 110.35970 * 264.99708 * 19 18 17 34 34 H 1.09003 * 110.42003 * 280.88853 * 21 20 19 35 35 H 1.09000 * 110.41853 * 158.42068 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 1.4208 5 1 2.0974 1.0963 2.2416 6 6 3.1259 2.8781 1.6727 7 7 3.5532 3.6182 0.6730 8 14 3.4378 3.4171 3.4338 9 1 2.8608 2.4166 4.3673 10 1 2.7997 4.7375 3.6678 11 1 4.9004 3.5260 3.6665 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 1 0.4477 -2.4741 -0.5551 16 6 1.4603 -3.3328 1.2657 17 6 2.2023 -3.7555 0.0070 18 6 3.7373 -3.7367 -0.0716 19 6 4.0754 -4.9791 -0.9290 20 8 2.8838 -5.2278 -1.7075 21 6 1.7777 -4.9881 -0.8069 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6084 2.0284 -0.5139 26 1 3.1499 1.1384 -0.5138 27 1 3.3916 3.3381 -0.2415 28 1 2.0541 -2.9545 2.0977 29 1 0.5717 -3.9005 1.5420 30 1 4.0847 -2.8270 -0.5614 31 1 4.1730 -3.8250 0.9237 32 1 4.9200 -4.7686 -1.5852 33 1 4.2953 -5.8333 -0.2886 34 1 1.6298 -5.8451 -0.1497 35 1 0.8681 -4.7775 -1.3693 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336353602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:11 Heat of formation + Delta-G solvation = -53.059390 kcal Electronic energy + Delta-G solvation = -17467.041999 eV Core-core repulsion = 14659.112730 eV Total energy + Delta-G solvation = -2807.929270 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29650 -38.48659 -35.77083 -34.84880 -32.82125 -30.18359 -28.01857 -27.17709 -25.82123 -23.92826 -22.67826 -22.12722 -19.79794 -18.39858 -16.95536 -16.61010 -16.01704 -15.75746 -15.40219 -14.78308 -14.53233 -13.79276 -13.66525 -13.21011 -12.93767 -12.43246 -12.25958 -12.19823 -12.10286 -11.78915 -11.37470 -11.33545 -10.91245 -10.83240 -10.59717 -10.33743 -10.15242 -9.84855 -9.70574 -9.14679 -8.75246 -8.40006 -7.64018 -6.40453 -4.12577 3.04251 3.41437 3.46526 3.58391 3.64990 3.88875 4.09490 4.49765 4.55078 4.69908 4.90791 4.97021 5.21399 5.25493 5.35783 5.46331 5.51659 5.55361 5.61294 5.64951 5.73884 5.84541 5.86944 6.02012 6.12761 6.13855 6.61318 6.78184 6.80218 7.10881 7.39171 8.01708 8.26970 8.42107 8.76111 9.00031 9.57438 10.96957 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.035378 B = 0.005976 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.265420 B = 4684.672546 C = 4882.578491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.595 5.595 3 C 0.235 3.765 4 C -0.605 4.605 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 1.077 2.923 9 H -0.290 1.290 10 H -0.286 1.286 11 H -0.286 1.286 12 C 0.535 3.465 13 O -0.536 6.536 14 C -0.168 4.168 15 H 0.120 0.880 16 C -0.135 4.135 17 C -0.133 4.133 18 C -0.129 4.129 19 C 0.045 3.955 20 O -0.376 6.376 21 C 0.084 3.916 22 H 0.043 0.957 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.034 0.966 27 H 0.268 0.732 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.490 -15.135 -0.764 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.326 5.326 3 C 0.115 3.885 4 C -0.644 4.644 5 H 0.070 0.930 6 C -0.185 4.185 7 N -0.547 5.547 8 Si 0.906 3.094 9 H -0.216 1.216 10 H -0.213 1.213 11 H -0.212 1.212 12 C 0.322 3.678 13 O -0.414 6.414 14 C -0.189 4.189 15 H 0.137 0.863 16 C -0.173 4.173 17 C -0.134 4.134 18 C -0.166 4.166 19 C -0.031 4.031 20 O -0.295 6.295 21 C 0.007 3.993 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.176 -13.966 -0.079 14.895 hybrid contribution -0.961 -1.036 -0.640 1.551 sum -6.137 -15.003 -0.719 16.225 Atomic orbital electron populations 1.21637 0.81216 1.02733 1.00349 1.47908 1.06238 1.07255 1.71191 1.19359 0.91998 0.78950 0.98191 1.22289 1.40689 1.09542 0.91896 0.93009 1.25821 0.93319 0.93312 1.06062 1.70741 1.44125 1.39665 1.00138 0.83427 0.76735 0.75511 0.73757 1.21634 1.21265 1.21189 1.19392 0.87357 0.83959 0.77082 1.90545 1.13768 1.86510 1.50570 1.22283 1.01394 0.91119 1.04152 0.86260 1.22865 1.02290 1.01006 0.91128 1.22103 0.95639 0.94871 1.00758 1.22723 0.91980 1.00515 1.01418 1.23519 0.88699 0.96526 0.94366 1.89130 1.15257 1.90242 1.34889 1.22769 0.90739 0.94173 0.91607 0.93805 0.92098 0.90815 0.96070 0.94821 0.92156 0.87824 0.87817 0.86494 0.90617 0.89175 0.92728 0.91633 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.01 59.85 0.60 1.97 16 2 N -0.59 -12.89 2.86 -182.95 -0.52 -13.41 16 3 C 0.23 6.18 4.47 -5.19 -0.02 6.16 16 4 C -0.61 -17.44 9.39 -34.44 -0.32 -17.77 16 5 H 0.05 1.51 7.81 -52.49 -0.41 1.10 16 6 C 0.02 0.55 5.46 -17.82 -0.10 0.46 16 7 N -0.91 -27.93 13.65 55.43 0.76 -27.17 16 8 Si 1.08 25.77 29.90 -169.99 -5.08 20.69 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 C 0.54 11.28 7.45 -10.99 -0.08 11.19 16 13 O -0.54 -13.22 12.92 5.56 0.07 -13.14 16 14 C -0.17 -2.59 4.67 -92.13 -0.43 -3.02 16 15 H 0.12 1.53 7.27 -51.93 -0.38 1.15 16 16 C -0.14 -1.77 10.01 -27.09 -0.27 -2.04 16 17 C -0.13 -1.87 2.50 -154.69 -0.39 -2.26 16 18 C -0.13 -1.99 5.96 -25.47 -0.15 -2.14 16 19 C 0.05 0.59 7.65 38.05 0.29 0.88 16 20 O -0.38 -5.43 11.65 -35.23 -0.41 -5.84 16 21 C 0.08 1.01 7.44 37.51 0.28 1.29 16 22 H 0.04 0.61 8.14 -51.94 -0.42 0.19 16 23 H 0.06 0.82 6.64 -51.93 -0.34 0.47 16 24 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 25 H 0.02 0.56 7.94 -51.93 -0.41 0.15 16 26 H 0.03 0.98 7.29 -51.93 -0.38 0.61 16 27 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 28 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.12 2.22 5.48 -51.93 -0.28 1.93 16 31 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.95 8.12 -51.93 -0.42 0.52 16 LS Contribution 290.16 15.07 4.37 4.37 Total: -1.00 -33.77 290.16 -6.51 -40.28 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.10 Total: -0.50 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -0.60 Total: -5.27 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.23 Total: -40.58 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.34 Total: -18.99 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.77 -6.51 -40.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336353602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.779 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds