Wall clock time and date at job start Sun Mar 29 2020 22:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46495 * 119.99782 * 2 1 4 4 C 1.50703 * 109.47395 * 89.99766 * 3 2 1 5 5 H 1.07994 * 119.99603 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99838 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00380 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99848 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47261 * 239.99776 * 8 6 4 11 11 H 1.48500 * 109.47454 * 119.99769 * 8 6 4 12 12 C 1.34779 * 120.00109 * 179.97438 * 2 1 3 13 13 O 1.21276 * 119.99641 * 180.02562 * 12 2 1 14 14 C 1.50697 * 119.99999 * 0.02562 * 12 2 1 15 15 H 1.09007 * 115.56670 * 34.37893 * 14 12 2 16 16 C 1.53186 * 117.52116 * 248.60617 * 14 12 2 17 17 C 1.52101 * 59.76889 * 252.57661 * 16 14 12 18 18 C 1.53710 * 121.74111 * 111.09749 * 17 16 14 19 19 C 1.54691 * 103.69607 * 143.46978 * 18 17 16 20 20 O 1.44492 * 104.86909 * 23.85016 * 19 18 17 21 21 C 1.44638 * 105.46547 * 320.01875 * 20 19 18 22 22 H 1.08989 * 109.47094 * 90.00527 * 1 2 3 23 23 H 1.09002 * 109.46932 * 210.00276 * 1 2 3 24 24 H 1.09000 * 109.47143 * 330.00012 * 1 2 3 25 25 H 1.09005 * 109.47411 * 329.99700 * 3 2 1 26 26 H 1.08998 * 109.46900 * 209.99779 * 3 2 1 27 27 H 0.97001 * 119.99667 * 0.02562 * 7 6 4 28 28 H 1.08997 * 117.52440 * 0.02562 * 16 14 12 29 29 H 1.09007 * 117.52314 * 145.10289 * 16 14 12 30 30 H 1.09001 * 110.57896 * 262.02804 * 18 17 16 31 31 H 1.09011 * 110.57408 * 24.76767 * 18 17 16 32 32 H 1.09006 * 110.36171 * 142.69715 * 19 18 17 33 33 H 1.09004 * 110.35970 * 264.99708 * 19 18 17 34 34 H 1.09003 * 110.42003 * 280.88853 * 21 20 19 35 35 H 1.09000 * 110.41853 * 158.42068 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 1.4208 5 1 2.0974 1.0963 2.2416 6 6 3.1259 2.8781 1.6727 7 7 3.5532 3.6182 0.6730 8 14 3.4378 3.4171 3.4338 9 1 2.8608 2.4166 4.3673 10 1 2.7997 4.7375 3.6678 11 1 4.9004 3.5260 3.6665 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 1 0.4477 -2.4741 -0.5551 16 6 1.4603 -3.3328 1.2657 17 6 2.2023 -3.7555 0.0070 18 6 3.7373 -3.7367 -0.0716 19 6 4.0754 -4.9791 -0.9290 20 8 2.8838 -5.2278 -1.7075 21 6 1.7777 -4.9881 -0.8069 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6084 2.0284 -0.5139 26 1 3.1499 1.1384 -0.5138 27 1 3.3916 3.3381 -0.2415 28 1 2.0541 -2.9545 2.0977 29 1 0.5717 -3.9005 1.5420 30 1 4.0847 -2.8270 -0.5614 31 1 4.1730 -3.8250 0.9237 32 1 4.9200 -4.7686 -1.5852 33 1 4.2953 -5.8333 -0.2886 34 1 1.6298 -5.8451 -0.1497 35 1 0.8681 -4.7775 -1.3693 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336353602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:11 Heat of formation + Delta-G solvation = -76.577246 kcal Electronic energy + Delta-G solvation = -17468.061810 eV Core-core repulsion = 14659.112730 eV Total energy + Delta-G solvation = -2808.949080 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.58199 -39.87302 -37.12762 -36.49442 -34.94798 -31.31708 -29.78447 -28.37130 -27.33006 -25.75586 -23.94006 -23.57617 -21.03637 -19.85342 -19.06238 -18.08796 -17.27602 -16.86538 -16.69601 -16.23464 -16.02517 -15.66922 -15.09416 -14.73492 -14.24056 -13.94193 -13.67515 -13.63494 -13.36265 -13.33575 -13.18865 -12.84003 -12.52118 -12.42743 -11.98395 -11.91112 -11.47121 -11.22270 -11.03148 -10.69230 -10.64717 -10.33011 -9.48901 -8.72960 -6.49342 1.46631 1.56969 1.57543 1.73409 2.17346 2.50766 2.68158 3.03328 3.06506 3.37700 3.57525 3.75667 3.90205 4.05341 4.23948 4.35057 4.45695 4.46874 4.57054 4.67075 4.70527 4.72120 4.80320 4.81581 4.85380 4.89027 4.95538 5.05325 5.33083 5.56128 5.77736 5.80562 6.10626 6.40691 6.64928 7.25865 7.39520 8.61510 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.035378 B = 0.005976 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.265420 B = 4684.672546 C = 4882.578491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.606 5.606 3 C 0.245 3.755 4 C -0.615 4.615 5 H 0.045 0.955 6 C -0.033 4.033 7 N -0.932 5.932 8 Si 1.125 2.875 9 H -0.273 1.273 10 H -0.268 1.268 11 H -0.282 1.282 12 C 0.520 3.480 13 O -0.587 6.587 14 C -0.178 4.178 15 H 0.155 0.845 16 C -0.112 4.112 17 C -0.137 4.137 18 C -0.137 4.137 19 C 0.052 3.948 20 O -0.398 6.398 21 C 0.088 3.912 22 H 0.069 0.931 23 H 0.097 0.903 24 H 0.063 0.937 25 H 0.017 0.983 26 H -0.009 1.009 27 H 0.255 0.745 28 H 0.081 0.919 29 H 0.152 0.848 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.697 -17.285 0.453 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.337 5.337 3 C 0.123 3.877 4 C -0.653 4.653 5 H 0.063 0.937 6 C -0.231 4.231 7 N -0.569 5.569 8 Si 0.946 3.054 9 H -0.198 1.198 10 H -0.193 1.193 11 H -0.208 1.208 12 C 0.310 3.690 13 O -0.468 6.468 14 C -0.199 4.199 15 H 0.172 0.828 16 C -0.149 4.149 17 C -0.138 4.138 18 C -0.174 4.174 19 C -0.025 4.025 20 O -0.317 6.317 21 C 0.011 3.989 22 H 0.088 0.912 23 H 0.116 0.884 24 H 0.082 0.918 25 H 0.035 0.965 26 H 0.009 0.991 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.170 0.830 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.436 -16.142 1.119 17.807 hybrid contribution -0.247 -0.381 -1.067 1.160 sum -7.683 -16.522 0.052 18.221 Atomic orbital electron populations 1.21929 0.77706 1.04095 1.02495 1.48001 1.08458 1.05849 1.71357 1.18877 0.90821 0.81436 0.96544 1.22549 1.40504 1.09525 0.92719 0.93693 1.27417 0.92573 0.93585 1.09493 1.70869 1.45605 1.40432 0.99998 0.82843 0.77030 0.76373 0.69185 1.19831 1.19328 1.20781 1.20509 0.87273 0.85627 0.75600 1.90542 1.16310 1.87493 1.52479 1.22274 1.02328 0.88092 1.07170 0.82756 1.23009 1.03220 0.99267 0.89383 1.22257 0.94488 0.95043 1.01994 1.22629 0.93724 0.99848 1.01197 1.23517 0.88551 0.96162 0.94237 1.89106 1.16190 1.90274 1.36172 1.22993 0.90453 0.93782 0.91631 0.91208 0.88405 0.91773 0.96463 0.99087 0.93574 0.90000 0.83049 0.90929 0.90935 0.89251 0.90010 0.88605 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.43 10.01 127.77 1.28 3.71 16 2 N -0.61 -26.54 2.86 -851.13 -2.43 -28.97 16 3 C 0.25 13.51 4.47 85.63 0.38 13.89 16 4 C -0.61 -36.37 9.39 25.60 0.24 -36.13 16 5 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 6 C -0.03 -1.94 5.46 84.65 0.46 -1.48 16 7 N -0.93 -58.84 13.65 21.45 0.29 -58.55 16 8 Si 1.12 51.79 29.90 68.60 2.05 53.84 16 9 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 C 0.52 22.23 7.45 87.66 0.65 22.88 16 13 O -0.59 -30.64 12.92 -3.02 -0.04 -30.67 16 14 C -0.18 -5.06 4.67 -11.77 -0.06 -5.11 16 15 H 0.15 3.26 7.27 -2.38 -0.02 3.24 16 16 C -0.11 -2.53 10.01 30.36 0.30 -2.23 16 17 C -0.14 -3.54 2.50 -52.30 -0.13 -3.67 16 18 C -0.14 -4.22 5.96 31.41 0.19 -4.03 16 19 C 0.05 1.28 7.65 72.56 0.56 1.83 16 20 O -0.40 -10.56 11.65 -148.98 -1.74 -12.29 16 21 C 0.09 1.75 7.44 72.21 0.54 2.28 16 22 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.10 2.26 6.64 -2.39 -0.02 2.24 16 24 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 25 H 0.02 0.96 7.94 -2.38 -0.02 0.94 16 26 H -0.01 -0.56 7.29 -2.39 -0.02 -0.58 16 27 H 0.25 16.33 7.22 -92.71 -0.67 15.66 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 29 H 0.15 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.07 2.94 5.48 -2.39 -0.01 2.92 16 31 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.11 1.76 8.12 -2.39 -0.02 1.74 16 Total: -1.00 -78.19 290.16 3.72 -74.46 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.17 Total: 10.22 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 4.42 Total: -8.04 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -2.14 Total: -87.52 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -1.78 Total: -42.97 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.05 Total: 53.84 kcal Total: -78.19 3.72 -74.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336353602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.114 kcal (2) G-P(sol) polarization free energy of solvation -78.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds