Wall clock time and date at job start Sun Mar 29 2020 22:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99912 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99845 * 3 2 1 5 5 H 1.48500 * 109.46952 * 30.00275 * 3 2 1 6 6 H 1.48505 * 109.46837 * 149.99970 * 3 2 1 7 7 C 1.38807 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00016 * 160.27758 * 7 2 1 9 9 N 1.36942 * 120.00026 * 340.28489 * 7 2 1 10 10 C 1.46501 * 119.99665 * 320.53656 * 9 7 2 11 11 C 1.53003 * 109.46806 * 269.99530 * 10 9 7 12 12 N 1.46493 * 109.47229 * 180.02562 * 11 10 9 13 13 C 1.47057 * 125.40990 * 269.72305 * 12 11 10 14 14 C 1.54108 * 103.86087 * 179.86673 * 13 12 11 15 15 N 1.47054 * 103.86174 * 0.37331 * 14 13 12 16 16 C 1.33943 * 109.18137 * 359.75577 * 15 14 13 17 17 O 1.21589 * 123.04526 * 179.97438 * 16 15 14 18 18 C 1.46502 * 120.00134 * 140.52741 * 9 7 2 19 19 C 1.52995 * 117.49922 * 3.29552 * 18 9 7 20 20 C 1.52995 * 117.50225 * 294.66994 * 18 9 7 21 21 H 0.97008 * 119.99846 * 355.01798 * 1 2 3 22 22 H 1.09004 * 109.46988 * 149.99775 * 10 9 7 23 23 H 1.08993 * 109.47151 * 29.99562 * 10 9 7 24 24 H 1.09003 * 109.47139 * 299.99990 * 11 10 9 25 25 H 1.09004 * 109.47147 * 60.00342 * 11 10 9 26 26 H 1.09001 * 110.54732 * 298.59044 * 13 12 11 27 27 H 1.08992 * 110.55028 * 61.40290 * 13 12 11 28 28 H 1.09003 * 110.75691 * 241.67404 * 14 13 12 29 29 H 1.09001 * 110.45899 * 118.92733 * 14 13 12 30 30 H 0.97005 * 125.40609 * 179.75222 * 15 14 13 31 31 H 1.09002 * 115.54468 * 148.99747 * 18 9 7 32 32 H 1.09005 * 117.50099 * 359.97438 * 19 18 9 33 33 H 1.08996 * 117.50293 * 145.01784 * 19 18 9 34 34 H 1.08995 * 117.49969 * 214.97802 * 20 18 9 35 35 H 1.09000 * 117.50207 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0428 -1.2296 -0.3151 9 7 1.3858 -2.3531 0.4011 10 6 0.4640 -2.3282 1.5395 11 6 1.2392 -2.6032 2.8296 12 7 0.3174 -2.5790 3.9678 13 6 -0.0191 -1.3910 4.7666 14 6 -1.0180 -1.9209 5.8136 15 7 -1.1312 -3.3530 5.4994 16 6 -0.3486 -3.6365 4.4500 17 8 -0.2511 -4.7528 3.9779 18 6 1.6395 -3.6093 -0.3088 19 6 2.6699 -3.5861 -1.4394 20 6 1.1796 -3.7032 -1.7649 21 1 -0.4850 0.8370 0.0730 22 1 -0.3004 -3.0935 1.4047 23 1 -0.0097 -1.3486 1.6020 24 1 1.7129 -3.5830 2.7670 25 1 2.0036 -1.8379 2.9643 26 1 0.8713 -0.9917 5.2522 27 1 -0.4892 -0.6310 4.1427 28 1 -1.9849 -1.4286 5.7090 29 1 -0.6251 -1.7800 6.8206 30 1 -1.6847 -3.9911 5.9764 31 1 1.5777 -4.5128 0.2979 32 1 3.1589 -2.6361 -1.6555 33 1 3.2864 -4.4744 -1.5769 34 1 0.8155 -4.6686 -2.1164 35 1 0.6878 -2.8306 -2.1947 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336689452.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:39 Heat of formation + Delta-G solvation = 37.353041 kcal Electronic energy + Delta-G solvation = -17593.586980 eV Core-core repulsion = 14821.871038 eV Total energy + Delta-G solvation = -2771.715941 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.55797 -37.00740 -35.92562 -34.41528 -32.99781 -30.77295 -28.81082 -27.38136 -24.49679 -22.77869 -22.17546 -21.26300 -19.89728 -19.43357 -17.34069 -16.57634 -15.93347 -15.65435 -15.32021 -14.60360 -13.97657 -13.89684 -13.69764 -13.47678 -12.85450 -12.39553 -12.35337 -11.93794 -11.83002 -11.46896 -11.03694 -10.77870 -10.68464 -10.27013 -10.13603 -9.85157 -9.62300 -9.51541 -9.22230 -9.03622 -8.49262 -8.14884 -6.52151 -5.79321 -3.47645 2.97434 3.29925 3.38346 3.41130 3.54784 4.18876 4.42789 4.59064 5.00483 5.02337 5.26803 5.31113 5.38549 5.53726 5.77622 5.88725 6.01918 6.17602 6.30395 6.33020 6.43033 6.55917 6.60026 6.73812 7.01426 7.07739 7.20981 7.29811 7.34215 7.63645 7.78202 7.93470 8.47752 8.97364 9.13846 9.74584 10.34725 11.14075 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.020651 B = 0.008703 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.555338 B = 3216.602044 C = 4251.525204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.014 3.986 3 Si 0.895 3.105 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.261 4.261 8 H 0.065 0.935 9 N -0.550 5.550 10 C 0.139 3.861 11 C 0.130 3.870 12 N -0.621 5.621 13 C 0.090 3.910 14 C 0.095 3.905 15 N -0.750 5.750 16 C 0.695 3.305 17 O -0.593 6.593 18 C 0.119 3.881 19 C -0.195 4.195 20 C -0.220 4.220 21 H 0.254 0.746 22 H 0.030 0.970 23 H 0.094 0.906 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.423 0.577 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.959 -1.062 10.290 10.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.186 4.186 3 Si 0.723 3.277 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.267 5.267 10 C 0.012 3.988 11 C 0.007 3.993 12 N -0.359 5.359 13 C -0.034 4.034 14 C -0.031 4.031 15 N -0.412 5.412 16 C 0.395 3.605 17 O -0.471 6.471 18 C 0.011 3.989 19 C -0.233 4.233 20 C -0.261 4.261 21 H 0.064 0.936 22 H 0.049 0.951 23 H 0.112 0.888 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.264 0.736 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.899 -1.431 9.841 9.985 hybrid contribution 0.076 0.839 0.183 0.862 sum -0.823 -0.592 10.024 10.075 Atomic orbital electron populations 1.70096 1.05528 1.26071 1.50602 1.25264 0.94976 0.98798 0.99611 0.86453 0.79552 0.83662 0.77997 1.21161 1.21466 1.20198 1.19059 0.93361 0.85033 1.41608 0.91767 1.43275 1.51078 1.03240 1.29097 1.21178 0.91146 1.02760 0.83694 1.22256 0.91019 1.01898 0.84162 1.47359 1.47541 1.07709 1.33298 1.22349 0.98241 0.90226 0.92570 1.22293 0.99910 0.82011 0.98853 1.45116 1.50192 1.10568 1.35362 1.15980 0.79410 0.84782 0.80323 1.90923 1.69872 1.21963 1.64387 1.21283 1.00520 0.90611 0.86525 1.23015 0.92168 1.01747 1.06377 1.23320 0.96787 1.00937 1.05068 0.93599 0.95128 0.88795 0.91477 0.90574 0.90440 0.89737 0.90368 0.90626 0.73607 0.89377 0.88512 0.90797 0.91263 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.51 11.50 55.49 0.64 -23.87 16 2 C 0.01 0.38 4.98 -17.43 -0.09 0.29 16 3 Si 0.89 20.59 29.60 -169.99 -5.03 15.56 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.26 -6.87 8.47 -15.06 -0.13 -7.00 16 8 H 0.06 1.69 6.75 -52.49 -0.35 1.34 16 9 N -0.55 -13.67 2.75 -165.66 -0.46 -14.12 16 10 C 0.14 3.30 5.66 -4.04 -0.02 3.27 16 11 C 0.13 2.63 6.32 -4.04 -0.03 2.60 16 12 N -0.62 -11.01 2.96 -178.81 -0.53 -11.54 16 13 C 0.09 1.18 7.68 -3.16 -0.02 1.16 16 14 C 0.09 0.95 8.06 -3.16 -0.03 0.93 16 15 N -0.75 -9.92 6.37 -64.70 -0.41 -10.33 16 16 C 0.69 12.83 8.60 -88.40 -0.76 12.07 16 17 O -0.59 -13.45 17.53 5.29 0.09 -13.35 16 18 C 0.12 2.70 6.56 -67.93 -0.45 2.25 16 19 C -0.19 -4.00 9.80 -26.73 -0.26 -4.26 16 20 C -0.22 -4.76 10.36 -26.73 -0.28 -5.03 16 21 H 0.25 6.79 8.32 -40.82 -0.34 6.45 16 22 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 23 H 0.09 2.43 5.59 -51.93 -0.29 2.14 16 24 H 0.07 1.42 7.91 -51.93 -0.41 1.01 16 25 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.42 4.59 8.96 -40.82 -0.37 4.23 16 31 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 32 H 0.10 2.12 6.46 -51.93 -0.34 1.78 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.09 2.23 8.14 -51.93 -0.42 1.81 16 LS Contribution 293.87 15.07 4.43 4.43 Total: -1.00 -31.83 293.87 -8.44 -40.27 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.12 Total: 6.66 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -2.06 Total: 6.29 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.76 Total: -59.86 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.83 -8.44 -40.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336689452.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.627 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds