Wall clock time and date at job start Sun Mar 29 2020 22:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99912 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99845 * 3 2 1 5 5 H 1.48500 * 109.46952 * 30.00275 * 3 2 1 6 6 H 1.48505 * 109.46837 * 149.99970 * 3 2 1 7 7 C 1.38807 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00016 * 160.27758 * 7 2 1 9 9 N 1.36942 * 120.00026 * 340.28489 * 7 2 1 10 10 C 1.46501 * 119.99665 * 320.53656 * 9 7 2 11 11 C 1.53003 * 109.46806 * 269.99530 * 10 9 7 12 12 N 1.46493 * 109.47229 * 180.02562 * 11 10 9 13 13 C 1.47057 * 125.40990 * 269.72305 * 12 11 10 14 14 C 1.54108 * 103.86087 * 179.86673 * 13 12 11 15 15 N 1.47054 * 103.86174 * 0.37331 * 14 13 12 16 16 C 1.33943 * 109.18137 * 359.75577 * 15 14 13 17 17 O 1.21589 * 123.04526 * 179.97438 * 16 15 14 18 18 C 1.46502 * 120.00134 * 140.52741 * 9 7 2 19 19 C 1.52995 * 117.49922 * 3.29552 * 18 9 7 20 20 C 1.52995 * 117.50225 * 294.66994 * 18 9 7 21 21 H 0.97008 * 119.99846 * 355.01798 * 1 2 3 22 22 H 1.09004 * 109.46988 * 149.99775 * 10 9 7 23 23 H 1.08993 * 109.47151 * 29.99562 * 10 9 7 24 24 H 1.09003 * 109.47139 * 299.99990 * 11 10 9 25 25 H 1.09004 * 109.47147 * 60.00342 * 11 10 9 26 26 H 1.09001 * 110.54732 * 298.59044 * 13 12 11 27 27 H 1.08992 * 110.55028 * 61.40290 * 13 12 11 28 28 H 1.09003 * 110.75691 * 241.67404 * 14 13 12 29 29 H 1.09001 * 110.45899 * 118.92733 * 14 13 12 30 30 H 0.97005 * 125.40609 * 179.75222 * 15 14 13 31 31 H 1.09002 * 115.54468 * 148.99747 * 18 9 7 32 32 H 1.09005 * 117.50099 * 359.97438 * 19 18 9 33 33 H 1.08996 * 117.50293 * 145.01784 * 19 18 9 34 34 H 1.08995 * 117.49969 * 214.97802 * 20 18 9 35 35 H 1.09000 * 117.50207 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0428 -1.2296 -0.3151 9 7 1.3858 -2.3531 0.4011 10 6 0.4640 -2.3282 1.5395 11 6 1.2392 -2.6032 2.8296 12 7 0.3174 -2.5790 3.9678 13 6 -0.0191 -1.3910 4.7666 14 6 -1.0180 -1.9209 5.8136 15 7 -1.1312 -3.3530 5.4994 16 6 -0.3486 -3.6365 4.4500 17 8 -0.2511 -4.7528 3.9779 18 6 1.6395 -3.6093 -0.3088 19 6 2.6699 -3.5861 -1.4394 20 6 1.1796 -3.7032 -1.7649 21 1 -0.4850 0.8370 0.0730 22 1 -0.3004 -3.0935 1.4047 23 1 -0.0097 -1.3486 1.6020 24 1 1.7129 -3.5830 2.7670 25 1 2.0036 -1.8379 2.9643 26 1 0.8713 -0.9917 5.2522 27 1 -0.4892 -0.6310 4.1427 28 1 -1.9849 -1.4286 5.7090 29 1 -0.6251 -1.7800 6.8206 30 1 -1.6847 -3.9911 5.9764 31 1 1.5777 -4.5128 0.2979 32 1 3.1589 -2.6361 -1.6555 33 1 3.2864 -4.4744 -1.5769 34 1 0.8155 -4.6686 -2.1164 35 1 0.6878 -2.8306 -2.1947 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336689452.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:39 Heat of formation + Delta-G solvation = 15.542330 kcal Electronic energy + Delta-G solvation = -17594.532763 eV Core-core repulsion = 14821.871038 eV Total energy + Delta-G solvation = -2772.661725 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.85447 -38.82476 -37.35723 -35.99480 -34.71020 -32.60784 -30.10624 -28.96412 -26.38859 -24.07854 -23.65981 -22.97190 -21.64833 -20.99600 -18.61473 -18.34783 -17.36682 -17.19216 -16.96369 -16.39047 -15.71223 -15.26824 -15.13335 -14.72496 -14.54164 -14.01534 -14.00698 -13.35709 -13.15792 -13.03171 -12.81913 -12.56576 -12.48487 -12.08062 -11.94138 -11.58773 -11.38493 -11.26267 -10.95939 -10.49655 -10.31529 -9.46243 -8.49449 -7.77911 -5.52231 1.47102 1.50506 1.60343 1.69706 2.14211 2.50982 3.07824 3.17404 3.38812 3.57580 3.65544 4.03428 4.18032 4.27828 4.46437 4.51377 4.56137 4.67839 4.70609 4.80392 4.91473 4.91847 5.00197 5.02246 5.26171 5.33488 5.53013 5.59386 5.71420 5.84866 6.24906 6.46038 6.63440 7.13699 7.61710 7.79307 8.36669 9.12512 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.020651 B = 0.008703 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.555338 B = 3216.602044 C = 4251.525204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.030 4.030 3 Si 0.959 3.041 4 H -0.290 1.290 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.267 4.267 8 H 0.063 0.937 9 N -0.565 5.565 10 C 0.152 3.848 11 C 0.150 3.850 12 N -0.630 5.630 13 C 0.081 3.919 14 C 0.101 3.899 15 N -0.734 5.734 16 C 0.683 3.317 17 O -0.645 6.645 18 C 0.094 3.906 19 C -0.171 4.171 20 C -0.219 4.219 21 H 0.253 0.747 22 H 0.004 0.996 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.436 0.564 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -0.460 11.736 11.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.228 4.228 3 Si 0.786 3.214 4 H -0.216 1.216 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.397 4.397 8 H 0.080 0.920 9 N -0.284 5.284 10 C 0.025 3.975 11 C 0.025 3.975 12 N -0.368 5.368 13 C -0.042 4.042 14 C -0.023 4.023 15 N -0.396 5.396 16 C 0.383 3.617 17 O -0.528 6.528 18 C -0.015 4.015 19 C -0.209 4.209 20 C -0.260 4.260 21 H 0.062 0.938 22 H 0.022 0.978 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.133 0.867 30 H 0.278 0.722 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.281 -0.806 11.342 11.374 hybrid contribution -0.167 0.625 -0.279 0.704 sum -0.448 -0.181 11.064 11.074 Atomic orbital electron populations 1.70224 1.06944 1.26636 1.51959 1.25958 0.95603 1.01653 0.99590 0.85449 0.78646 0.79730 0.77556 1.21646 1.21161 1.19124 1.19246 0.93362 0.85842 1.41266 0.91967 1.43457 1.51093 1.03750 1.30052 1.20968 0.90848 1.00415 0.85266 1.21720 0.90844 1.01131 0.83796 1.47305 1.47064 1.09433 1.32955 1.22693 1.00160 0.88563 0.92770 1.22578 1.00509 0.79554 0.99611 1.45039 1.48611 1.12429 1.33539 1.16302 0.79987 0.84110 0.81281 1.90872 1.71637 1.24058 1.66260 1.21518 1.02617 0.90220 0.87102 1.23018 0.91615 1.02573 1.03689 1.23231 0.97840 1.00874 1.04041 0.93817 0.97773 0.90940 0.92757 0.90103 0.88134 0.90529 0.88010 0.86658 0.72154 0.88470 0.90037 0.87099 0.88487 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.88 11.50 21.65 0.25 -51.63 16 2 C -0.03 -1.60 4.98 84.86 0.42 -1.18 16 3 Si 0.96 42.35 29.60 68.60 2.03 44.38 16 4 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.27 -14.20 8.47 84.03 0.71 -13.49 16 8 H 0.06 3.28 6.75 -2.91 -0.02 3.26 16 9 N -0.57 -28.69 2.75 -678.04 -1.86 -30.55 16 10 C 0.15 7.44 5.66 86.38 0.49 7.92 16 11 C 0.15 6.15 6.32 86.38 0.55 6.70 16 12 N -0.63 -22.13 2.96 -838.36 -2.48 -24.61 16 13 C 0.08 1.95 7.68 86.65 0.67 2.61 16 14 C 0.10 1.68 8.06 86.65 0.70 2.38 16 15 N -0.73 -17.89 6.37 -477.32 -3.04 -20.93 16 16 C 0.68 25.01 8.60 179.57 1.54 26.56 16 17 O -0.65 -29.89 17.53 -4.00 -0.07 -29.96 16 18 C 0.09 4.24 6.56 44.99 0.30 4.54 16 19 C -0.17 -6.80 9.80 30.59 0.30 -6.50 16 20 C -0.22 -9.42 10.36 30.59 0.32 -9.11 16 21 H 0.25 13.74 8.32 -92.70 -0.77 12.97 16 22 H 0.00 0.20 8.07 -2.39 -0.02 0.18 16 23 H 0.07 3.87 5.59 -2.39 -0.01 3.86 16 24 H 0.05 2.35 7.91 -2.39 -0.02 2.34 16 25 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 26 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.44 8.50 8.96 -92.70 -0.83 7.67 16 31 H 0.10 4.18 8.14 -2.39 -0.02 4.16 16 32 H 0.08 3.51 6.46 -2.38 -0.02 3.50 16 33 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 34 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 35 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -70.98 293.87 1.07 -69.91 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.26 Total: 22.96 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 5.99 Total: 20.43 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -7.13 Total: -127.72 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.07 Total: -29.96 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -70.98 1.07 -69.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336689452.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.450 kcal (2) G-P(sol) polarization free energy of solvation -70.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds