Wall clock time and date at job start Sun Mar 29 2020 21:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.48701 * 2 1 4 4 C 1.53230 * 109.49475 * 239.96203 * 2 1 3 5 5 C 1.51274 * 108.53982 * 185.38555 * 4 2 1 6 6 O 1.20754 * 120.85026 * 231.32891 * 5 4 2 7 7 C 1.51270 * 118.29633 * 51.34959 * 5 4 2 8 8 C 1.53232 * 108.53776 * 308.65327 * 7 5 4 9 9 C 1.52956 * 109.40646 * 54.62547 * 8 7 5 10 10 H 1.09000 * 109.35508 * 56.47458 * 9 8 7 11 11 C 1.50701 * 109.41670 * 176.29417 * 9 8 7 12 12 O 1.21296 * 119.99774 * 89.43249 * 11 9 8 13 13 N 1.34766 * 120.00313 * 269.44090 * 11 9 8 14 14 C 1.46499 * 120.00409 * 185.06889 * 13 11 9 15 15 C 1.37104 * 119.99971 * 4.79186 * 13 11 9 16 16 H 1.07998 * 120.00115 * 10.29347 * 15 13 11 17 17 C 1.38953 * 120.00118 * 190.29145 * 15 13 11 18 18 N 1.31412 * 119.99863 * 354.28280 * 17 15 13 19 19 Si 1.86800 * 120.00034 * 174.27922 * 17 15 13 20 20 H 1.48497 * 109.46818 * 60.00316 * 19 17 15 21 21 H 1.48504 * 109.47237 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47205 * 300.00350 * 19 17 15 23 23 H 1.08998 * 109.47163 * 305.99509 * 1 2 3 24 24 H 1.09009 * 109.47171 * 65.98953 * 1 2 3 25 25 H 1.09000 * 109.47340 * 185.99143 * 1 2 3 26 26 H 1.08997 * 109.62816 * 305.10583 * 4 2 1 27 27 H 1.09004 * 109.62388 * 65.48339 * 4 2 1 28 28 H 1.08997 * 109.62988 * 68.36572 * 7 5 4 29 29 H 1.09002 * 109.62671 * 188.94019 * 7 5 4 30 30 H 1.09004 * 109.47846 * 294.64949 * 8 7 5 31 31 H 1.08993 * 109.48273 * 174.60848 * 8 7 5 32 32 H 1.08995 * 109.47427 * 236.72116 * 14 13 11 33 33 H 1.08998 * 109.46743 * 356.71458 * 14 13 11 34 34 H 1.08997 * 109.47693 * 116.71248 * 14 13 11 35 35 H 0.97001 * 119.99919 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0413 -0.7231 -1.2505 5 6 3.5479 -0.8280 -1.1631 6 8 4.2478 -0.4680 -2.0788 7 6 4.1550 -1.3959 0.1007 8 6 3.5670 -0.6485 1.3022 9 6 2.0401 -0.7215 1.2485 10 1 1.7293 -1.7658 1.2159 11 6 1.4637 -0.0656 2.4768 12 8 1.2151 1.1215 2.4702 13 7 1.2247 -0.7980 3.5825 14 6 0.5625 -0.1864 4.7373 15 6 1.5961 -2.1171 3.6246 16 1 2.2239 -2.5264 2.8470 17 6 1.1648 -2.9274 4.6678 18 7 0.4959 -2.4059 5.6715 19 14 1.5358 -4.7581 4.6433 20 1 3.0060 -4.9648 4.6127 21 1 0.9712 -5.3939 5.8608 22 1 0.9246 -5.3709 3.4366 23 1 -0.3633 0.6040 0.8314 24 1 -0.3634 0.4182 -0.9388 25 1 -0.3634 -1.0220 0.1073 26 1 1.6069 -1.7215 -1.2994 27 1 1.7618 -0.1583 -2.1399 28 1 3.9163 -2.4567 0.1770 29 1 5.2365 -1.2618 0.0796 30 1 3.8824 0.3944 1.2713 31 1 3.9207 -1.1083 2.2249 32 1 1.1947 -0.2953 5.6185 33 1 0.3930 0.8721 4.5404 34 1 -0.3930 -0.6808 4.9123 35 1 0.1945 -2.9717 6.3996 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345404675.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:16 Heat of formation + Delta-G solvation = -80.989946 kcal Electronic energy + Delta-G solvation = -17986.077490 eV Core-core repulsion = 15176.937061 eV Total energy + Delta-G solvation = -2809.140429 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.02518 -38.55704 -36.02928 -34.71252 -32.27512 -31.41000 -29.20918 -26.95073 -26.00854 -24.35261 -22.28366 -20.78506 -19.18959 -18.87604 -17.08001 -16.13781 -15.34192 -15.33304 -14.62758 -14.47090 -14.42429 -14.00533 -13.49555 -13.24598 -12.55702 -12.39215 -12.00495 -11.90503 -11.77784 -11.61946 -11.34801 -11.14942 -11.01567 -10.72842 -10.53874 -10.50976 -10.39995 -10.32754 -9.97374 -9.18458 -9.11970 -8.31329 -7.92714 -6.33991 -3.95023 2.10334 3.05259 3.13371 3.14511 3.83694 3.99621 4.28786 4.70446 4.91785 4.98706 5.06396 5.26024 5.42665 5.46211 5.61227 5.72319 5.78801 6.00420 6.03441 6.05597 6.18666 6.22895 6.39101 6.45009 6.55890 6.75142 6.78426 6.92470 7.23365 7.33304 7.47396 7.63591 7.72257 8.34292 9.01744 9.51205 9.90622 10.58946 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025087 B = 0.008593 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.870214 B = 3257.714653 C = 3857.351837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.064 4.064 3 H 0.079 0.921 4 C -0.165 4.165 5 C 0.366 3.634 6 O -0.471 6.471 7 C -0.168 4.168 8 C -0.100 4.100 9 C -0.093 4.093 10 H 0.095 0.905 11 C 0.457 3.543 12 O -0.613 6.613 13 N -0.444 5.444 14 C 0.121 3.879 15 C -0.331 4.331 16 H 0.101 0.899 17 C 0.035 3.965 18 N -0.874 5.874 19 Si 0.923 3.077 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 -1.926 -6.984 7.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 H 0.097 0.903 4 C -0.203 4.203 5 C 0.243 3.757 6 O -0.346 6.346 7 C -0.205 4.205 8 C -0.139 4.139 9 C -0.114 4.114 10 H 0.113 0.887 11 C 0.245 3.755 12 O -0.501 6.501 13 N -0.160 5.160 14 C -0.022 4.022 15 C -0.459 4.459 16 H 0.119 0.881 17 C -0.170 4.170 18 N -0.513 5.513 19 Si 0.750 3.250 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.197 1.197 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.053 -1.249 -7.211 7.601 hybrid contribution 0.098 -1.226 0.320 1.270 sum 2.151 -2.475 -6.891 7.631 Atomic orbital electron populations 1.21819 0.94333 1.02105 1.01970 1.20864 0.96591 0.99569 0.91237 0.90277 1.22429 0.93995 1.03376 1.00468 1.24999 0.91782 0.72173 0.86728 1.90362 1.65617 1.38597 1.40014 1.22332 1.01562 1.02086 0.94553 1.21407 0.94338 1.00782 0.97340 1.21188 0.95092 1.01458 0.93699 0.88735 1.19727 0.84286 0.86873 0.84573 1.90508 1.59773 1.15704 1.84147 1.43728 1.50278 1.10045 1.11983 1.21560 0.98718 0.94292 0.87641 1.19685 1.30939 0.84728 1.10518 0.88145 1.25341 0.95969 1.00330 0.95311 1.70206 1.36620 1.35436 1.09026 0.86054 0.78821 0.82189 0.77985 1.19777 1.20786 1.19749 0.90912 0.93336 0.92838 0.88398 0.89637 0.88209 0.89583 0.91479 0.89724 0.92478 0.94756 0.91168 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.74 37.15 0.32 -1.99 16 2 C -0.06 -1.02 1.93 -90.52 -0.17 -1.20 16 3 H 0.08 1.39 7.97 -51.93 -0.41 0.97 16 4 C -0.16 -2.21 5.45 -27.48 -0.15 -2.36 16 5 C 0.37 5.38 6.72 -28.47 -0.19 5.19 16 6 O -0.47 -8.19 17.89 6.00 0.11 -8.08 16 7 C -0.17 -2.25 6.17 -27.48 -0.17 -2.42 16 8 C -0.10 -1.62 5.06 -26.63 -0.13 -1.75 16 9 C -0.09 -1.68 1.17 -91.81 -0.11 -1.78 16 10 H 0.09 1.67 6.51 -51.93 -0.34 1.33 16 11 C 0.46 10.43 5.79 -10.99 -0.06 10.37 16 12 O -0.61 -15.50 14.54 5.54 0.08 -15.42 16 13 N -0.44 -10.85 3.03 -122.20 -0.37 -11.22 16 14 C 0.12 2.98 8.88 59.85 0.53 3.51 16 15 C -0.33 -7.90 9.08 -14.93 -0.14 -8.04 16 16 H 0.10 2.19 5.70 -52.49 -0.30 1.89 16 17 C 0.03 0.83 5.46 -17.47 -0.10 0.74 16 18 N -0.87 -22.06 9.50 55.50 0.53 -21.53 16 19 Si 0.92 18.55 29.56 -169.99 -5.02 13.53 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 23 H 0.07 1.38 6.58 -51.93 -0.34 1.04 16 24 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.41 7.81 -51.93 -0.41 1.01 16 32 H 0.06 1.44 7.33 -51.93 -0.38 1.06 16 33 H 0.03 0.83 6.91 -51.93 -0.36 0.47 16 34 H 0.07 1.78 6.79 -51.93 -0.35 1.43 16 35 H 0.27 6.44 8.31 -40.82 -0.34 6.11 16 LS Contribution 281.19 15.07 4.24 4.24 Total: -1.00 -28.34 281.19 -5.79 -34.13 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.98 Total: 4.11 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.37 Total: 0.27 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.16 Total: -32.76 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.19 Total: -23.51 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.34 -5.79 -34.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345404675.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.861 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds