Wall clock time and date at job start Sun Mar 29 2020 21:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.48701 * 2 1 4 4 C 1.53230 * 109.49475 * 239.96203 * 2 1 3 5 5 C 1.51274 * 108.53982 * 185.38555 * 4 2 1 6 6 O 1.20754 * 120.85026 * 231.32891 * 5 4 2 7 7 C 1.51270 * 118.29633 * 51.34959 * 5 4 2 8 8 C 1.53232 * 108.53776 * 308.65327 * 7 5 4 9 9 C 1.52956 * 109.40646 * 54.62547 * 8 7 5 10 10 H 1.09000 * 109.35508 * 56.47458 * 9 8 7 11 11 C 1.50701 * 109.41670 * 176.29417 * 9 8 7 12 12 O 1.21296 * 119.99774 * 89.43249 * 11 9 8 13 13 N 1.34766 * 120.00313 * 269.44090 * 11 9 8 14 14 C 1.46499 * 120.00409 * 185.06889 * 13 11 9 15 15 C 1.37104 * 119.99971 * 4.79186 * 13 11 9 16 16 H 1.07998 * 120.00115 * 10.29347 * 15 13 11 17 17 C 1.38953 * 120.00118 * 190.29145 * 15 13 11 18 18 N 1.31412 * 119.99863 * 354.28280 * 17 15 13 19 19 Si 1.86800 * 120.00034 * 174.27922 * 17 15 13 20 20 H 1.48497 * 109.46818 * 60.00316 * 19 17 15 21 21 H 1.48504 * 109.47237 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47205 * 300.00350 * 19 17 15 23 23 H 1.08998 * 109.47163 * 305.99509 * 1 2 3 24 24 H 1.09009 * 109.47171 * 65.98953 * 1 2 3 25 25 H 1.09000 * 109.47340 * 185.99143 * 1 2 3 26 26 H 1.08997 * 109.62816 * 305.10583 * 4 2 1 27 27 H 1.09004 * 109.62388 * 65.48339 * 4 2 1 28 28 H 1.08997 * 109.62988 * 68.36572 * 7 5 4 29 29 H 1.09002 * 109.62671 * 188.94019 * 7 5 4 30 30 H 1.09004 * 109.47846 * 294.64949 * 8 7 5 31 31 H 1.08993 * 109.48273 * 174.60848 * 8 7 5 32 32 H 1.08995 * 109.47427 * 236.72116 * 14 13 11 33 33 H 1.08998 * 109.46743 * 356.71458 * 14 13 11 34 34 H 1.08997 * 109.47693 * 116.71248 * 14 13 11 35 35 H 0.97001 * 119.99919 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0413 -0.7231 -1.2505 5 6 3.5479 -0.8280 -1.1631 6 8 4.2478 -0.4680 -2.0788 7 6 4.1550 -1.3959 0.1007 8 6 3.5670 -0.6485 1.3022 9 6 2.0401 -0.7215 1.2485 10 1 1.7293 -1.7658 1.2159 11 6 1.4637 -0.0656 2.4768 12 8 1.2151 1.1215 2.4702 13 7 1.2247 -0.7980 3.5825 14 6 0.5625 -0.1864 4.7373 15 6 1.5961 -2.1171 3.6246 16 1 2.2239 -2.5264 2.8470 17 6 1.1648 -2.9274 4.6678 18 7 0.4959 -2.4059 5.6715 19 14 1.5358 -4.7581 4.6433 20 1 3.0060 -4.9648 4.6127 21 1 0.9712 -5.3939 5.8608 22 1 0.9246 -5.3709 3.4366 23 1 -0.3633 0.6040 0.8314 24 1 -0.3634 0.4182 -0.9388 25 1 -0.3634 -1.0220 0.1073 26 1 1.6069 -1.7215 -1.2994 27 1 1.7618 -0.1583 -2.1399 28 1 3.9163 -2.4567 0.1770 29 1 5.2365 -1.2618 0.0796 30 1 3.8824 0.3944 1.2713 31 1 3.9207 -1.1083 2.2249 32 1 1.1947 -0.2953 5.6185 33 1 0.3930 0.8721 4.5404 34 1 -0.3930 -0.6808 4.9123 35 1 0.1945 -2.9717 6.3996 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345404675.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:16 Heat of formation + Delta-G solvation = -97.310496 kcal Electronic energy + Delta-G solvation = -17986.785202 eV Core-core repulsion = 15176.937061 eV Total energy + Delta-G solvation = -2809.848141 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.42332 -40.11643 -37.51298 -36.55250 -33.58570 -33.19958 -30.59640 -28.45916 -27.61467 -26.14263 -23.61560 -22.17858 -20.84072 -20.20689 -18.75507 -17.90704 -16.63811 -16.54514 -16.14419 -16.07673 -15.93286 -15.55906 -15.04764 -14.79484 -14.01380 -13.90989 -13.44156 -13.26555 -13.17306 -13.05935 -12.85185 -12.69795 -12.60086 -12.36255 -12.24561 -12.08344 -11.81806 -11.66189 -11.38688 -10.94651 -10.36978 -10.14787 -9.85294 -8.16788 -5.84328 0.95567 1.49064 1.51952 1.61380 2.07788 2.32501 3.00465 3.19791 3.22025 3.70782 3.79230 4.00062 4.08875 4.32027 4.41753 4.44597 4.51717 4.66605 4.75471 4.82312 4.91783 4.92452 5.01336 5.10161 5.17729 5.18807 5.28580 5.42587 5.44740 5.47630 5.53260 5.85000 6.46787 6.50276 7.16938 7.66966 8.06073 8.78080 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025087 B = 0.008593 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.870214 B = 3257.714653 C = 3857.351837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 H 0.058 0.942 4 C -0.155 4.155 5 C 0.370 3.630 6 O -0.500 6.500 7 C -0.158 4.158 8 C -0.095 4.095 9 C -0.087 4.087 10 H 0.106 0.894 11 C 0.451 3.549 12 O -0.644 6.644 13 N -0.461 5.461 14 C 0.135 3.865 15 C -0.344 4.344 16 H 0.124 0.876 17 C -0.014 4.014 18 N -0.908 5.908 19 Si 0.993 3.007 20 H -0.262 1.262 21 H -0.291 1.291 22 H -0.260 1.260 23 H 0.034 0.966 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.126 0.874 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.027 0.973 34 H 0.058 0.942 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 -4.009 -8.752 9.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 H 0.077 0.923 4 C -0.192 4.192 5 C 0.249 3.751 6 O -0.376 6.376 7 C -0.196 4.196 8 C -0.134 4.134 9 C -0.108 4.108 10 H 0.124 0.876 11 C 0.241 3.759 12 O -0.534 6.534 13 N -0.178 5.178 14 C -0.008 4.008 15 C -0.471 4.471 16 H 0.141 0.859 17 C -0.214 4.214 18 N -0.548 5.548 19 Si 0.816 3.184 20 H -0.186 1.186 21 H -0.217 1.217 22 H -0.184 1.184 23 H 0.053 0.947 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.144 0.856 27 H 0.116 0.884 28 H 0.145 0.855 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.803 -3.329 -8.993 9.990 hybrid contribution -0.164 -0.474 0.909 1.038 sum 2.639 -3.803 -8.083 9.315 Atomic orbital electron populations 1.21771 0.94229 1.02083 1.01796 1.20790 0.96650 0.98673 0.91754 0.92322 1.22376 0.93100 1.04730 0.99040 1.25245 0.92223 0.71093 0.86565 1.90370 1.66250 1.39826 1.41163 1.22300 1.01984 1.03067 0.92226 1.21322 0.92899 1.00536 0.98599 1.21217 0.96173 1.01553 0.91843 0.87604 1.20636 0.83225 0.86557 0.85448 1.90483 1.60727 1.17316 1.84853 1.44012 1.50738 1.10810 1.12270 1.21285 0.97959 0.93758 0.87815 1.20181 1.31315 0.84359 1.11266 0.85902 1.26275 0.95709 1.04663 0.94795 1.70338 1.37846 1.36896 1.09715 0.84985 0.79043 0.76544 0.77853 1.18639 1.21694 1.18431 0.94700 0.90715 0.91921 0.85561 0.88430 0.85459 0.88453 0.92806 0.90310 0.93837 0.95388 0.92373 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 8.74 71.98 0.63 -3.67 16 2 C -0.06 -1.81 1.93 -10.73 -0.02 -1.83 16 3 H 0.06 2.03 7.97 -2.39 -0.02 2.01 16 4 C -0.16 -3.60 5.45 30.11 0.16 -3.44 16 5 C 0.37 9.70 6.72 29.47 0.20 9.90 16 6 O -0.50 -16.11 17.89 -1.43 -0.03 -16.13 16 7 C -0.16 -3.70 6.17 30.11 0.19 -3.51 16 8 C -0.10 -2.89 5.06 30.66 0.16 -2.73 16 9 C -0.09 -2.98 1.17 -11.57 -0.01 -3.00 16 10 H 0.11 3.42 6.51 -2.39 -0.02 3.40 16 11 C 0.45 20.67 5.79 87.66 0.51 21.18 16 12 O -0.64 -33.36 14.54 -3.08 -0.04 -33.41 16 13 N -0.46 -22.76 3.03 -658.91 -1.99 -24.75 16 14 C 0.14 6.91 8.88 127.77 1.14 8.04 16 15 C -0.34 -16.09 9.08 84.04 0.76 -15.33 16 16 H 0.12 5.03 5.70 -2.91 -0.02 5.01 16 17 C -0.01 -0.66 5.46 84.93 0.46 -0.20 16 18 N -0.91 -46.35 9.50 21.66 0.21 -46.14 16 19 Si 0.99 36.67 29.56 68.60 2.03 38.70 16 20 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 21 H -0.29 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 23 H 0.03 1.31 6.58 -2.39 -0.02 1.30 16 24 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 2.49 7.81 -2.39 -0.02 2.47 16 32 H 0.04 2.28 7.33 -2.39 -0.02 2.26 16 33 H 0.03 1.41 6.91 -2.39 -0.02 1.39 16 34 H 0.06 3.07 6.79 -2.39 -0.02 3.05 16 35 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 Total: -1.00 -61.68 281.19 5.42 -56.26 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 1.08 Total: 20.06 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 4.17 Total: 5.41 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -1.79 Total: -70.89 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: -0.07 Total: -49.54 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -61.68 5.42 -56.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345404675.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.047 kcal (2) G-P(sol) polarization free energy of solvation -61.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds