Wall clock time and date at job start Sun Mar 29 2020 21:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.49190 * 2 1 4 4 C 1.53234 * 109.48150 * 239.96666 * 2 1 3 5 5 C 1.51265 * 108.53558 * 294.64899 * 4 2 1 6 6 O 1.20759 * 120.85292 * 128.67713 * 5 4 2 7 7 C 1.51275 * 118.29785 * 308.64975 * 5 4 2 8 8 C 1.53241 * 108.48192 * 51.39188 * 7 5 4 9 9 C 1.52952 * 109.48634 * 120.03338 * 2 1 3 10 10 H 1.08993 * 109.41773 * 176.41698 * 9 2 1 11 11 C 1.50706 * 109.41495 * 296.27808 * 9 2 1 12 12 O 1.21291 * 119.99799 * 0.13512 * 11 9 2 13 13 N 1.34774 * 119.99974 * 180.14148 * 11 9 2 14 14 C 1.46499 * 119.99933 * 359.97438 * 13 11 9 15 15 C 1.37105 * 119.99595 * 179.97438 * 13 11 9 16 16 H 1.07998 * 120.00279 * 335.38766 * 15 13 11 17 17 C 1.38953 * 119.99671 * 155.38915 * 15 13 11 18 18 N 1.31415 * 119.99749 * 331.78091 * 17 15 13 19 19 Si 1.86798 * 119.99976 * 151.78882 * 17 15 13 20 20 H 1.48504 * 109.47135 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47073 * 59.99717 * 19 17 15 22 22 H 1.48497 * 109.47037 * 299.99670 * 19 17 15 23 23 H 1.09004 * 109.46779 * 299.96133 * 1 2 3 24 24 H 1.08993 * 109.47456 * 59.96744 * 1 2 3 25 25 H 1.09000 * 109.46626 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.62320 * 54.35893 * 4 2 1 27 27 H 1.08993 * 109.62322 * 174.93080 * 4 2 1 28 28 H 1.08999 * 109.62581 * 171.06408 * 7 5 4 29 29 H 1.09001 * 109.62668 * 291.44280 * 7 5 4 30 30 H 1.09008 * 109.42488 * 185.32128 * 8 7 5 31 31 H 1.08994 * 109.54309 * 65.28020 * 8 7 5 32 32 H 1.09006 * 109.47254 * 271.50272 * 14 13 11 33 33 H 1.08991 * 109.47362 * 31.50642 * 14 13 11 34 34 H 1.09000 * 109.46870 * 151.50904 * 14 13 11 35 35 H 0.96993 * 120.00127 * 354.05571 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0411 -0.7230 -1.2506 5 6 1.6376 -2.1783 -1.1634 6 8 1.0647 -2.7181 -2.0792 7 6 1.9705 -2.9403 0.1003 8 6 1.4606 -2.1362 1.3010 9 6 2.0403 -0.7217 1.2483 10 1 3.1283 -0.7770 1.2156 11 6 1.6141 0.0402 2.4768 12 8 0.9644 1.0582 2.3640 13 7 1.9552 -0.4094 3.7007 14 6 2.7396 -1.6392 3.8368 15 6 1.5679 0.2841 4.8182 16 1 1.3572 1.3412 4.7517 17 6 1.4466 -0.3733 6.0364 18 7 1.1506 -1.6533 6.0656 19 14 1.7040 0.5626 7.6324 20 1 1.5191 -0.3591 8.7820 21 1 0.7177 1.6691 7.7219 22 1 3.0794 1.1218 7.6619 23 1 -0.3633 0.5133 0.8904 24 1 -0.3634 0.5143 -0.8896 25 1 -0.3632 -1.0277 -0.0005 26 1 1.5991 -0.2732 -2.1398 27 1 3.1272 -0.6465 -1.2995 28 1 1.4834 -3.9151 0.0791 29 1 3.0500 -3.0720 0.1747 30 1 1.7751 -2.6239 2.2238 31 1 0.3724 -2.0846 1.2696 32 1 2.0672 -2.4958 3.8839 33 1 3.4025 -1.7443 2.9781 34 1 3.3328 -1.5925 4.7501 35 1 0.9322 -2.1195 5.2435 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345404682.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:18 Heat of formation + Delta-G solvation = -76.592403 kcal Electronic energy + Delta-G solvation = -18079.167470 eV Core-core repulsion = 15270.217732 eV Total energy + Delta-G solvation = -2808.949738 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.38653 -38.71130 -36.24615 -34.98423 -32.22247 -31.26212 -29.13925 -27.06803 -26.49861 -24.10774 -22.77985 -21.35094 -19.47653 -18.01260 -17.46415 -16.23825 -15.96555 -15.29187 -15.00108 -14.73758 -14.06624 -13.89642 -13.69934 -13.48561 -13.16995 -12.79478 -12.36484 -11.90658 -11.86850 -11.49141 -11.41929 -11.20909 -11.10488 -10.82595 -10.63075 -10.46786 -10.25388 -10.18149 -10.01001 -9.26883 -8.95910 -8.28828 -7.87221 -6.66234 -3.91454 2.00501 3.27728 3.34209 3.53712 3.75855 4.14049 4.20855 4.61648 4.76690 4.87857 4.96078 5.09722 5.22207 5.26405 5.42726 5.48240 5.60002 5.72480 5.80011 5.90505 5.92879 5.98354 6.06851 6.13291 6.24433 6.34627 6.39481 6.53700 6.64480 6.86165 7.53088 7.85546 8.07257 8.59610 8.89305 9.38461 9.84464 10.59345 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.045156 B = 0.006835 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.927025 B = 4095.512452 C = 4436.441768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.059 4.059 3 H 0.087 0.913 4 C -0.167 4.167 5 C 0.367 3.633 6 O -0.468 6.468 7 C -0.167 4.167 8 C -0.122 4.122 9 C -0.100 4.100 10 H 0.084 0.916 11 C 0.452 3.548 12 O -0.576 6.576 13 N -0.452 5.452 14 C 0.081 3.919 15 C -0.404 4.404 16 H 0.091 0.909 17 C 0.009 3.991 18 N -0.876 5.876 19 Si 1.072 2.928 20 H -0.280 1.280 21 H -0.283 1.283 22 H -0.285 1.285 23 H 0.090 0.910 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 -2.337 -8.484 10.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.077 4.077 3 H 0.105 0.895 4 C -0.205 4.205 5 C 0.243 3.757 6 O -0.343 6.343 7 C -0.205 4.205 8 C -0.160 4.160 9 C -0.122 4.122 10 H 0.102 0.898 11 C 0.241 3.759 12 O -0.460 6.460 13 N -0.171 5.171 14 C -0.063 4.063 15 C -0.531 4.531 16 H 0.108 0.892 17 C -0.198 4.198 18 N -0.511 5.511 19 Si 0.898 3.102 20 H -0.206 1.206 21 H -0.209 1.209 22 H -0.211 1.211 23 H 0.108 0.892 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.323 -2.317 -7.339 8.827 hybrid contribution 0.068 0.016 -1.590 1.591 sum 4.391 -2.302 -8.929 10.212 Atomic orbital electron populations 1.22088 0.94570 1.01269 1.03523 1.20771 0.96941 0.99425 0.90606 0.89513 1.22445 1.02959 0.94331 1.00725 1.24943 0.73576 0.90466 0.86709 1.90374 1.32091 1.71845 1.39958 1.22319 1.03516 1.00039 0.94604 1.21875 1.01968 0.94129 0.97979 1.21244 1.00821 0.95223 0.94871 0.89750 1.19896 0.84163 0.87923 0.83960 1.90474 1.42966 1.26765 1.85821 1.43617 1.45501 1.22664 1.05332 1.21835 0.95063 0.88318 1.01103 1.20369 1.50569 0.95309 0.86892 0.89169 1.26334 0.94660 0.96826 1.02022 1.70797 1.37638 1.10874 1.31801 0.83458 0.77060 0.75111 0.74563 1.20553 1.20948 1.21100 0.89153 0.93415 0.93713 0.89424 0.88584 0.89419 0.88403 0.89054 0.90707 0.93174 0.93351 0.91253 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 8.31 37.16 0.31 -2.32 16 2 C -0.06 -0.89 2.33 -90.52 -0.21 -1.11 16 3 H 0.09 1.39 8.00 -51.93 -0.42 0.97 16 4 C -0.17 -2.07 5.65 -27.49 -0.16 -2.23 16 5 C 0.37 5.06 5.75 -28.48 -0.16 4.90 16 6 O -0.47 -7.84 17.89 6.00 0.11 -7.73 16 7 C -0.17 -2.04 6.17 -27.48 -0.17 -2.21 16 8 C -0.12 -1.82 4.61 -26.63 -0.12 -1.94 16 9 C -0.10 -1.65 1.41 -91.81 -0.13 -1.78 16 10 H 0.08 1.22 7.40 -51.93 -0.38 0.84 16 11 C 0.45 10.22 6.74 -10.98 -0.07 10.14 16 12 O -0.58 -15.02 13.59 5.55 0.08 -14.95 16 13 N -0.45 -10.84 2.88 -122.19 -0.35 -11.20 16 14 C 0.08 1.61 7.07 59.85 0.42 2.03 16 15 C -0.40 -11.03 9.07 -14.93 -0.14 -11.17 16 16 H 0.09 2.64 7.56 -52.49 -0.40 2.25 16 17 C 0.01 0.23 4.67 -17.46 -0.08 0.15 16 18 N -0.88 -23.62 12.75 55.50 0.71 -22.91 16 19 Si 1.07 23.31 30.00 -169.99 -5.10 18.21 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H 0.09 1.81 5.83 -51.93 -0.30 1.51 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.73 5.60 -51.93 -0.29 0.44 16 26 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.38 4.41 -51.92 -0.23 1.15 16 31 H 0.07 1.23 6.19 -51.93 -0.32 0.91 16 32 H 0.05 0.98 5.39 -51.93 -0.28 0.70 16 33 H 0.05 0.77 6.15 -51.93 -0.32 0.45 16 34 H 0.07 1.47 7.39 -51.93 -0.38 1.09 16 35 H 0.27 7.32 6.27 -40.82 -0.26 7.06 16 LS Contribution 271.08 15.07 4.09 4.09 Total: -1.00 -31.42 271.08 -5.47 -36.90 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.49 Total: 3.11 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -0.51 Total: -5.52 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.36 Total: -34.11 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.18 Total: -22.68 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.10 Total: 18.21 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.42 -5.47 -36.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345404682.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.697 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds