Wall clock time and date at job start Sun Mar 29 2020 21:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.49190 * 2 1 4 4 C 1.53234 * 109.48150 * 239.96666 * 2 1 3 5 5 C 1.51265 * 108.53558 * 294.64899 * 4 2 1 6 6 O 1.20759 * 120.85292 * 128.67713 * 5 4 2 7 7 C 1.51275 * 118.29785 * 308.64975 * 5 4 2 8 8 C 1.53241 * 108.48192 * 51.39188 * 7 5 4 9 9 C 1.52952 * 109.48634 * 120.03338 * 2 1 3 10 10 H 1.08993 * 109.41773 * 176.41698 * 9 2 1 11 11 C 1.50706 * 109.41495 * 296.27808 * 9 2 1 12 12 O 1.21291 * 119.99799 * 0.13512 * 11 9 2 13 13 N 1.34774 * 119.99974 * 180.14148 * 11 9 2 14 14 C 1.46499 * 119.99933 * 359.97438 * 13 11 9 15 15 C 1.37105 * 119.99595 * 179.97438 * 13 11 9 16 16 H 1.07998 * 120.00279 * 335.38766 * 15 13 11 17 17 C 1.38953 * 119.99671 * 155.38915 * 15 13 11 18 18 N 1.31415 * 119.99749 * 331.78091 * 17 15 13 19 19 Si 1.86798 * 119.99976 * 151.78882 * 17 15 13 20 20 H 1.48504 * 109.47135 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47073 * 59.99717 * 19 17 15 22 22 H 1.48497 * 109.47037 * 299.99670 * 19 17 15 23 23 H 1.09004 * 109.46779 * 299.96133 * 1 2 3 24 24 H 1.08993 * 109.47456 * 59.96744 * 1 2 3 25 25 H 1.09000 * 109.46626 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.62320 * 54.35893 * 4 2 1 27 27 H 1.08993 * 109.62322 * 174.93080 * 4 2 1 28 28 H 1.08999 * 109.62581 * 171.06408 * 7 5 4 29 29 H 1.09001 * 109.62668 * 291.44280 * 7 5 4 30 30 H 1.09008 * 109.42488 * 185.32128 * 8 7 5 31 31 H 1.08994 * 109.54309 * 65.28020 * 8 7 5 32 32 H 1.09006 * 109.47254 * 271.50272 * 14 13 11 33 33 H 1.08991 * 109.47362 * 31.50642 * 14 13 11 34 34 H 1.09000 * 109.46870 * 151.50904 * 14 13 11 35 35 H 0.96993 * 120.00127 * 354.05571 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0411 -0.7230 -1.2506 5 6 1.6376 -2.1783 -1.1634 6 8 1.0647 -2.7181 -2.0792 7 6 1.9705 -2.9403 0.1003 8 6 1.4606 -2.1362 1.3010 9 6 2.0403 -0.7217 1.2483 10 1 3.1283 -0.7770 1.2156 11 6 1.6141 0.0402 2.4768 12 8 0.9644 1.0582 2.3640 13 7 1.9552 -0.4094 3.7007 14 6 2.7396 -1.6392 3.8368 15 6 1.5679 0.2841 4.8182 16 1 1.3572 1.3412 4.7517 17 6 1.4466 -0.3733 6.0364 18 7 1.1506 -1.6533 6.0656 19 14 1.7040 0.5626 7.6324 20 1 1.5191 -0.3591 8.7820 21 1 0.7177 1.6691 7.7219 22 1 3.0794 1.1218 7.6619 23 1 -0.3633 0.5133 0.8904 24 1 -0.3634 0.5143 -0.8896 25 1 -0.3632 -1.0277 -0.0005 26 1 1.5991 -0.2732 -2.1398 27 1 3.1272 -0.6465 -1.2995 28 1 1.4834 -3.9151 0.0791 29 1 3.0500 -3.0720 0.1747 30 1 1.7751 -2.6239 2.2238 31 1 0.3724 -2.0846 1.2696 32 1 2.0672 -2.4958 3.8839 33 1 3.4025 -1.7443 2.9781 34 1 3.3328 -1.5925 4.7501 35 1 0.9322 -2.1195 5.2435 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345404682.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:18 Heat of formation + Delta-G solvation = -96.771839 kcal Electronic energy + Delta-G solvation = -18080.042516 eV Core-core repulsion = 15270.217732 eV Total energy + Delta-G solvation = -2809.824784 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.72428 -40.19700 -37.69951 -36.80615 -33.84214 -32.74974 -30.41824 -28.45890 -28.15579 -25.93285 -23.96905 -22.74822 -20.99659 -19.44261 -19.19141 -17.82336 -17.31105 -16.66910 -16.29009 -16.21668 -15.68533 -15.46273 -15.14122 -14.82143 -14.66960 -14.21622 -13.80874 -13.33637 -13.25031 -13.10698 -12.82405 -12.59028 -12.52642 -12.40651 -11.99362 -11.92268 -11.90818 -11.71730 -11.45072 -10.90573 -10.37010 -10.10973 -9.80539 -8.73203 -6.00172 0.94177 1.52694 1.56248 1.83379 2.02717 2.42070 2.91944 3.05212 3.16815 3.56152 3.69709 3.82998 3.98656 4.17442 4.20963 4.29388 4.39459 4.41507 4.54843 4.62172 4.71470 4.77068 4.77652 4.87315 4.98409 5.04557 5.12463 5.15642 5.36605 5.44593 5.83744 5.94930 6.48383 6.65940 6.95400 7.46327 7.98372 8.52053 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.045156 B = 0.006835 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.927025 B = 4095.512452 C = 4436.441768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.056 4.056 3 H 0.080 0.920 4 C -0.156 4.156 5 C 0.368 3.632 6 O -0.501 6.501 7 C -0.157 4.157 8 C -0.116 4.116 9 C -0.090 4.090 10 H 0.121 0.879 11 C 0.445 3.555 12 O -0.620 6.620 13 N -0.471 5.471 14 C 0.086 3.914 15 C -0.432 4.432 16 H 0.056 0.944 17 C -0.022 4.022 18 N -0.889 5.889 19 Si 1.117 2.883 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.268 1.268 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.094 0.906 27 H 0.133 0.867 28 H 0.094 0.906 29 H 0.136 0.864 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.812 -3.333 -9.444 12.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.074 4.074 3 H 0.098 0.902 4 C -0.194 4.194 5 C 0.247 3.753 6 O -0.377 6.377 7 C -0.194 4.194 8 C -0.154 4.154 9 C -0.111 4.111 10 H 0.138 0.862 11 C 0.235 3.765 12 O -0.507 6.507 13 N -0.191 5.191 14 C -0.057 4.057 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.225 4.225 18 N -0.524 5.524 19 Si 0.938 3.062 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.193 1.193 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.151 0.849 28 H 0.113 0.887 29 H 0.154 0.846 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.279 -3.333 -8.309 10.935 hybrid contribution -0.605 0.367 -1.343 1.518 sum 5.674 -2.966 -9.653 11.583 Atomic orbital electron populations 1.22019 0.96218 1.00823 1.02163 1.20723 0.95576 0.99508 0.91641 0.90208 1.22398 1.05210 0.92854 0.98894 1.25273 0.72359 0.91011 0.86654 1.90383 1.33443 1.72592 1.41301 1.22302 1.05877 0.99334 0.91934 1.21776 1.00603 0.93441 0.99578 1.21265 1.02894 0.95130 0.91841 0.86158 1.21053 0.82712 0.87373 0.85328 1.90454 1.44539 1.28890 1.86776 1.43861 1.46406 1.23780 1.05051 1.21917 0.95003 0.86410 1.02336 1.20285 1.52332 0.94361 0.89008 0.92602 1.27543 0.93538 0.97014 1.04438 1.70892 1.38756 1.11297 1.31443 0.82887 0.77839 0.74160 0.71319 1.20014 1.20728 1.19291 0.93279 0.91924 0.93691 0.88782 0.84886 0.88747 0.84581 0.88991 0.93062 0.93144 0.88699 0.93022 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.16 8.31 71.98 0.60 -4.57 16 2 C -0.06 -1.59 2.33 -10.73 -0.02 -1.61 16 3 H 0.08 2.43 8.00 -2.39 -0.02 2.41 16 4 C -0.16 -3.27 5.65 30.11 0.17 -3.10 16 5 C 0.37 8.89 5.75 29.46 0.17 9.06 16 6 O -0.50 -15.50 17.89 -1.45 -0.03 -15.53 16 7 C -0.16 -3.19 6.17 30.11 0.19 -3.00 16 8 C -0.12 -3.19 4.61 30.66 0.14 -3.05 16 9 C -0.09 -2.76 1.41 -11.57 -0.02 -2.78 16 10 H 0.12 2.89 7.40 -2.39 -0.02 2.87 16 11 C 0.44 20.18 6.74 87.66 0.59 20.78 16 12 O -0.62 -33.51 13.59 -3.06 -0.04 -33.55 16 13 N -0.47 -22.76 2.88 -658.89 -1.90 -24.66 16 14 C 0.09 3.31 7.07 127.77 0.90 4.21 16 15 C -0.43 -24.25 9.07 84.04 0.76 -23.49 16 16 H 0.06 3.44 7.56 -2.91 -0.02 3.42 16 17 C -0.02 -1.16 4.67 84.93 0.40 -0.76 16 18 N -0.89 -48.16 12.75 21.66 0.28 -47.88 16 19 Si 1.12 47.20 30.00 68.60 2.06 49.26 16 20 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 23 H 0.05 2.05 5.83 -2.39 -0.01 2.03 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 25 H 0.04 1.46 5.60 -2.39 -0.01 1.44 16 26 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 29 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.09 2.54 4.41 -2.38 -0.01 2.53 16 31 H 0.05 1.65 6.19 -2.39 -0.01 1.63 16 32 H 0.05 1.92 5.39 -2.38 -0.01 1.91 16 33 H 0.09 2.67 6.15 -2.39 -0.01 2.65 16 34 H 0.05 2.14 7.39 -2.39 -0.02 2.13 16 35 H 0.27 14.43 6.27 -92.71 -0.58 13.85 16 Total: -1.00 -71.51 271.08 5.53 -65.98 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.29 Total: 14.70 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 3.88 Total: -8.32 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.62 Total: -72.54 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -0.07 Total: -49.08 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.06 Total: 49.26 kcal Total: -71.51 5.53 -65.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345404682.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.792 kcal (2) G-P(sol) polarization free energy of solvation -71.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds