Wall clock time and date at job start Sun Mar 29 2020 21:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.49183 * 2 1 4 4 C 1.53243 * 109.54089 * 120.00126 * 2 1 3 5 5 C 1.51273 * 108.48440 * 65.27652 * 4 2 1 6 6 O 1.20761 * 120.84692 * 231.36480 * 5 4 2 7 7 C 1.51262 * 118.29554 * 51.39025 * 5 4 2 8 8 C 1.53227 * 108.54040 * 308.64671 * 7 5 4 9 9 C 1.52956 * 109.40088 * 54.63465 * 8 7 5 10 10 H 1.08997 * 109.41793 * 56.43328 * 9 8 7 11 11 C 1.50703 * 109.41587 * 176.29612 * 9 8 7 12 12 O 1.21289 * 120.00106 * 112.05473 * 11 9 8 13 13 N 1.34781 * 119.99717 * 292.06001 * 11 9 8 14 14 C 1.46501 * 119.99966 * 4.86179 * 13 11 9 15 15 C 1.37088 * 119.99925 * 184.85920 * 13 11 9 16 16 H 1.07998 * 120.00349 * 23.57477 * 15 13 11 17 17 C 1.38954 * 120.00223 * 203.29994 * 15 13 11 18 18 N 1.31413 * 119.99640 * 11.02104 * 17 15 13 19 19 Si 1.86799 * 120.00247 * 191.02843 * 17 15 13 20 20 H 1.48503 * 109.47409 * 94.94648 * 19 17 15 21 21 H 1.48500 * 109.46942 * 214.94509 * 19 17 15 22 22 H 1.48497 * 109.46886 * 334.94479 * 19 17 15 23 23 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47228 * 300.03984 * 1 2 3 25 25 H 1.08997 * 109.46865 * 60.03890 * 1 2 3 26 26 H 1.09009 * 109.61639 * 305.60256 * 4 2 1 27 27 H 1.08993 * 109.84564 * 185.09086 * 4 2 1 28 28 H 1.09008 * 109.61902 * 188.93432 * 7 5 4 29 29 H 1.08999 * 109.62749 * 68.36923 * 7 5 4 30 30 H 1.08990 * 109.48563 * 294.65185 * 8 7 5 31 31 H 1.09003 * 109.49436 * 174.61528 * 8 7 5 32 32 H 1.09003 * 109.46831 * 209.43094 * 14 13 11 33 33 H 1.09007 * 109.46738 * 329.42597 * 14 13 11 34 34 H 1.09001 * 109.47341 * 89.42703 * 14 13 11 35 35 H 0.97002 * 119.99760 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0426 -0.7221 1.2507 5 6 1.6375 -2.1770 1.1643 6 8 1.0647 -2.7158 2.0808 7 6 1.9689 -2.9398 -0.0992 8 6 1.4605 -2.1364 -1.3008 9 6 2.0401 -0.7219 -1.2483 10 1 3.1282 -0.7772 -1.2156 11 6 1.6140 0.0400 -2.4767 12 8 0.8444 0.9719 -2.3757 13 7 2.0882 -0.3142 -3.6876 14 6 2.9324 -1.5037 -3.8244 15 6 1.7806 0.4385 -4.7913 16 1 1.5045 1.4764 -4.6773 17 6 1.8294 -0.1323 -6.0572 18 7 1.9559 -1.4339 -6.1866 19 14 1.7154 0.9506 -7.5751 20 1 3.0826 1.2754 -8.0553 21 1 0.9741 0.2311 -8.6418 22 1 0.9990 2.2060 -7.2348 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5145 0.8897 25 1 -0.3633 0.5132 -0.8903 26 1 1.6016 -0.2715 2.1400 27 1 3.1287 -0.6469 1.3024 28 1 1.4807 -3.9142 -0.0772 29 1 3.0484 -3.0698 -0.1759 30 1 0.3722 -2.0848 -1.2694 31 1 1.7748 -2.6240 -2.2237 32 1 3.6187 -1.3681 -4.6603 33 1 3.5022 -1.6523 -2.9070 34 1 2.3046 -2.3758 -4.0074 35 1 1.9904 -1.8323 -7.0704 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345404685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:20 Heat of formation + Delta-G solvation = -76.309308 kcal Electronic energy + Delta-G solvation = -18006.428657 eV Core-core repulsion = 15197.491195 eV Total energy + Delta-G solvation = -2808.937462 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27446 -38.57430 -36.10535 -34.69592 -32.13066 -31.29594 -29.09558 -27.03490 -26.17687 -24.35515 -22.70781 -21.29780 -19.27585 -17.86043 -16.93149 -16.19396 -15.92639 -15.19992 -14.85084 -14.65627 -14.18026 -13.88455 -13.64769 -13.26950 -12.82579 -12.65491 -12.19859 -11.80727 -11.75720 -11.41875 -11.33635 -11.19473 -11.01062 -10.81071 -10.64966 -10.36914 -10.33705 -10.30361 -10.05484 -9.21152 -9.01025 -8.22106 -7.69321 -6.33698 -3.90591 2.07344 3.13935 3.23811 3.29344 3.83855 4.10705 4.24196 4.73581 4.86071 4.95142 5.10183 5.20482 5.31629 5.35899 5.52442 5.59746 5.69677 5.83251 5.93721 6.01140 6.05220 6.14891 6.23529 6.32229 6.42071 6.50812 6.68788 6.82382 7.00792 7.19809 7.54110 7.59888 8.11872 8.47091 9.17811 9.41045 9.97225 10.70201 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.045833 B = 0.006723 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.769131 B = 4163.569582 C = 4532.703962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.059 4.059 3 H 0.084 0.916 4 C -0.167 4.167 5 C 0.367 3.633 6 O -0.470 6.470 7 C -0.167 4.167 8 C -0.115 4.115 9 C -0.099 4.099 10 H 0.084 0.916 11 C 0.452 3.548 12 O -0.582 6.582 13 N -0.446 5.446 14 C 0.110 3.890 15 C -0.304 4.304 16 H 0.097 0.903 17 C 0.030 3.970 18 N -0.884 5.884 19 Si 0.926 3.074 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.269 1.269 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.027 0.973 34 H 0.057 0.943 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.770 -2.505 8.134 9.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.077 4.077 3 H 0.102 0.898 4 C -0.205 4.205 5 C 0.244 3.756 6 O -0.345 6.345 7 C -0.205 4.205 8 C -0.153 4.153 9 C -0.120 4.120 10 H 0.103 0.897 11 C 0.240 3.760 12 O -0.468 6.468 13 N -0.164 5.164 14 C -0.033 4.033 15 C -0.432 4.432 16 H 0.115 0.885 17 C -0.173 4.173 18 N -0.523 5.523 19 Si 0.753 3.247 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.194 1.194 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.116 0.884 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.110 -2.473 8.467 9.353 hybrid contribution 0.169 0.256 -0.971 1.018 sum 3.279 -2.218 7.496 8.477 Atomic orbital electron populations 1.22176 0.94508 1.01327 1.03791 1.20780 0.97045 0.99248 0.90673 0.89767 1.22450 1.02913 0.94375 1.00757 1.24952 0.73500 0.90456 0.86718 1.90369 1.32205 1.71911 1.39971 1.22324 1.03544 1.00015 0.94617 1.21715 1.01817 0.93996 0.97726 1.21222 1.00840 0.95268 0.94714 0.89742 1.19870 0.84365 0.87390 0.84356 1.90437 1.37873 1.32658 1.85785 1.43581 1.42427 1.24366 1.06012 1.21598 0.94497 0.88795 0.98434 1.19662 1.45179 0.94924 0.83484 0.88482 1.25338 0.96792 0.95851 0.99308 1.69983 1.49019 1.09232 1.24107 0.85914 0.78245 0.79904 0.80683 1.20482 1.20946 1.19351 0.93826 0.93727 0.88376 0.89555 0.88625 0.89477 0.88394 0.90774 0.89169 0.91139 0.95407 0.92481 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.31 37.16 0.31 -2.39 16 2 C -0.06 -0.90 2.35 -90.51 -0.21 -1.11 16 3 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 4 C -0.17 -2.11 5.66 -27.48 -0.16 -2.26 16 5 C 0.37 5.16 5.75 -28.48 -0.16 4.99 16 6 O -0.47 -7.96 17.89 6.00 0.11 -7.86 16 7 C -0.17 -2.10 6.17 -27.49 -0.17 -2.26 16 8 C -0.11 -1.76 4.66 -26.64 -0.12 -1.88 16 9 C -0.10 -1.65 1.38 -91.81 -0.13 -1.78 16 10 H 0.08 1.25 7.14 -51.93 -0.37 0.88 16 11 C 0.45 10.24 6.77 -10.98 -0.07 10.17 16 12 O -0.58 -15.01 13.38 5.55 0.07 -14.93 16 13 N -0.45 -10.83 3.02 -122.19 -0.37 -11.20 16 14 C 0.11 2.31 7.20 59.85 0.43 2.74 16 15 C -0.30 -8.22 9.24 -14.94 -0.14 -8.36 16 16 H 0.10 2.75 7.47 -52.49 -0.39 2.36 16 17 C 0.03 0.78 5.10 -17.47 -0.09 0.69 16 18 N -0.88 -22.92 10.65 55.50 0.59 -22.33 16 19 Si 0.93 20.38 29.57 -169.99 -5.03 15.36 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H 0.04 0.71 5.60 -51.93 -0.29 0.42 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.10 1.97 5.54 -51.93 -0.29 1.68 16 26 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.23 6.19 -51.93 -0.32 0.91 16 31 H 0.09 1.43 5.17 -51.93 -0.27 1.16 16 32 H 0.07 1.58 6.92 -51.93 -0.36 1.23 16 33 H 0.03 0.47 5.93 -51.92 -0.31 0.16 16 34 H 0.06 1.23 6.69 -51.93 -0.35 0.88 16 35 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 272.17 15.07 4.10 4.10 Total: -1.00 -30.18 272.17 -5.65 -35.83 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.61 Total: 2.50 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.51 Total: -1.47 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.22 Total: -33.53 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.18 Total: -22.79 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.18 -5.65 -35.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345404685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.477 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds