Wall clock time and date at job start Sun Mar 29 2020 21:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.49183 * 2 1 4 4 C 1.53243 * 109.54089 * 120.00126 * 2 1 3 5 5 C 1.51273 * 108.48440 * 65.27652 * 4 2 1 6 6 O 1.20761 * 120.84692 * 231.36480 * 5 4 2 7 7 C 1.51262 * 118.29554 * 51.39025 * 5 4 2 8 8 C 1.53227 * 108.54040 * 308.64671 * 7 5 4 9 9 C 1.52956 * 109.40088 * 54.63465 * 8 7 5 10 10 H 1.08997 * 109.41793 * 56.43328 * 9 8 7 11 11 C 1.50703 * 109.41587 * 176.29612 * 9 8 7 12 12 O 1.21289 * 120.00106 * 112.05473 * 11 9 8 13 13 N 1.34781 * 119.99717 * 292.06001 * 11 9 8 14 14 C 1.46501 * 119.99966 * 4.86179 * 13 11 9 15 15 C 1.37088 * 119.99925 * 184.85920 * 13 11 9 16 16 H 1.07998 * 120.00349 * 23.57477 * 15 13 11 17 17 C 1.38954 * 120.00223 * 203.29994 * 15 13 11 18 18 N 1.31413 * 119.99640 * 11.02104 * 17 15 13 19 19 Si 1.86799 * 120.00247 * 191.02843 * 17 15 13 20 20 H 1.48503 * 109.47409 * 94.94648 * 19 17 15 21 21 H 1.48500 * 109.46942 * 214.94509 * 19 17 15 22 22 H 1.48497 * 109.46886 * 334.94479 * 19 17 15 23 23 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47228 * 300.03984 * 1 2 3 25 25 H 1.08997 * 109.46865 * 60.03890 * 1 2 3 26 26 H 1.09009 * 109.61639 * 305.60256 * 4 2 1 27 27 H 1.08993 * 109.84564 * 185.09086 * 4 2 1 28 28 H 1.09008 * 109.61902 * 188.93432 * 7 5 4 29 29 H 1.08999 * 109.62749 * 68.36923 * 7 5 4 30 30 H 1.08990 * 109.48563 * 294.65185 * 8 7 5 31 31 H 1.09003 * 109.49436 * 174.61528 * 8 7 5 32 32 H 1.09003 * 109.46831 * 209.43094 * 14 13 11 33 33 H 1.09007 * 109.46738 * 329.42597 * 14 13 11 34 34 H 1.09001 * 109.47341 * 89.42703 * 14 13 11 35 35 H 0.97002 * 119.99760 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0426 -0.7221 1.2507 5 6 1.6375 -2.1770 1.1643 6 8 1.0647 -2.7158 2.0808 7 6 1.9689 -2.9398 -0.0992 8 6 1.4605 -2.1364 -1.3008 9 6 2.0401 -0.7219 -1.2483 10 1 3.1282 -0.7772 -1.2156 11 6 1.6140 0.0400 -2.4767 12 8 0.8444 0.9719 -2.3757 13 7 2.0882 -0.3142 -3.6876 14 6 2.9324 -1.5037 -3.8244 15 6 1.7806 0.4385 -4.7913 16 1 1.5045 1.4764 -4.6773 17 6 1.8294 -0.1323 -6.0572 18 7 1.9559 -1.4339 -6.1866 19 14 1.7154 0.9506 -7.5751 20 1 3.0826 1.2754 -8.0553 21 1 0.9741 0.2311 -8.6418 22 1 0.9990 2.2060 -7.2348 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5145 0.8897 25 1 -0.3633 0.5132 -0.8903 26 1 1.6016 -0.2715 2.1400 27 1 3.1287 -0.6469 1.3024 28 1 1.4807 -3.9142 -0.0772 29 1 3.0484 -3.0698 -0.1759 30 1 0.3722 -2.0848 -1.2694 31 1 1.7748 -2.6240 -2.2237 32 1 3.6187 -1.3681 -4.6603 33 1 3.5022 -1.6523 -2.9070 34 1 2.3046 -2.3758 -4.0074 35 1 1.9904 -1.8323 -7.0704 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345404685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:20 Heat of formation + Delta-G solvation = -95.200149 kcal Electronic energy + Delta-G solvation = -18007.247825 eV Core-core repulsion = 15197.491195 eV Total energy + Delta-G solvation = -2809.756630 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.60583 -40.07697 -37.55177 -36.52849 -33.80005 -32.74451 -30.39008 -28.43970 -27.88409 -26.14959 -23.91321 -22.67148 -20.76192 -19.15573 -18.84967 -17.85648 -17.24101 -16.47273 -16.31409 -16.12638 -15.82138 -15.44274 -14.96730 -14.61262 -14.46267 -14.08753 -13.56126 -13.31693 -13.22811 -13.05022 -12.76544 -12.58873 -12.49468 -12.42263 -12.21774 -12.10987 -11.90825 -11.62745 -11.36204 -10.95089 -10.32156 -10.02220 -9.60126 -8.28989 -5.93750 0.99029 1.38117 1.42412 1.53981 2.09467 2.29813 3.07681 3.14101 3.23652 3.66022 3.79085 3.94937 4.06650 4.27455 4.29259 4.37118 4.48364 4.57005 4.72896 4.77203 4.84867 4.92008 4.95587 5.09397 5.09969 5.19060 5.23646 5.41791 5.47032 5.51230 5.60113 6.15965 6.53123 6.55201 7.23932 7.56164 8.12567 8.72399 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.045833 B = 0.006723 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.769131 B = 4163.569582 C = 4532.703962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.055 4.055 3 H 0.079 0.921 4 C -0.157 4.157 5 C 0.369 3.631 6 O -0.502 6.502 7 C -0.158 4.158 8 C -0.109 4.109 9 C -0.090 4.090 10 H 0.117 0.883 11 C 0.444 3.556 12 O -0.622 6.622 13 N -0.465 5.465 14 C 0.120 3.880 15 C -0.339 4.339 16 H 0.069 0.931 17 C -0.003 4.003 18 N -0.897 5.897 19 Si 0.985 3.015 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.278 1.278 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.132 0.868 28 H 0.093 0.907 29 H 0.135 0.865 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.423 -3.397 8.993 11.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.074 4.074 3 H 0.097 0.903 4 C -0.194 4.194 5 C 0.248 3.752 6 O -0.378 6.378 7 C -0.195 4.195 8 C -0.147 4.147 9 C -0.111 4.111 10 H 0.135 0.865 11 C 0.234 3.766 12 O -0.510 6.510 13 N -0.183 5.183 14 C -0.022 4.022 15 C -0.467 4.467 16 H 0.087 0.913 17 C -0.204 4.204 18 N -0.536 5.536 19 Si 0.809 3.191 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.203 1.203 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.150 0.850 28 H 0.112 0.888 29 H 0.152 0.848 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.783 -3.386 9.325 11.014 hybrid contribution -0.407 0.558 -1.223 1.405 sum 4.375 -2.827 8.102 9.632 Atomic orbital electron populations 1.22093 0.96072 1.00864 1.02535 1.20730 0.95753 0.99394 0.91561 0.90253 1.22404 1.05141 0.92858 0.99017 1.25269 0.72298 0.91023 0.86610 1.90378 1.33540 1.72655 1.41272 1.22303 1.05794 0.99354 0.92044 1.21610 1.00561 0.93382 0.99131 1.21241 1.02719 0.95169 0.91947 0.86485 1.20972 0.83181 0.86886 0.85570 1.90423 1.39385 1.34499 1.86664 1.43850 1.43374 1.25114 1.05986 1.21555 0.93732 0.87001 0.99956 1.19589 1.47232 0.94530 0.85397 0.91307 1.26007 0.96061 0.97120 1.01260 1.70053 1.48716 1.09975 1.24871 0.85042 0.78669 0.77924 0.77466 1.19056 1.20225 1.20299 0.93880 0.92247 0.92265 0.88855 0.84985 0.88798 0.84756 0.92947 0.89515 0.93132 0.90796 0.93524 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.28 8.31 71.98 0.60 -4.69 16 2 C -0.06 -1.60 2.35 -10.72 -0.03 -1.62 16 3 H 0.08 2.40 8.10 -2.39 -0.02 2.38 16 4 C -0.16 -3.36 5.66 30.11 0.17 -3.19 16 5 C 0.37 9.13 5.75 29.46 0.17 9.30 16 6 O -0.50 -15.76 17.89 -1.45 -0.03 -15.79 16 7 C -0.16 -3.34 6.17 30.10 0.19 -3.16 16 8 C -0.11 -3.10 4.66 30.66 0.14 -2.96 16 9 C -0.09 -2.81 1.38 -11.57 -0.02 -2.82 16 10 H 0.12 2.95 7.14 -2.39 -0.02 2.93 16 11 C 0.44 20.21 6.77 87.66 0.59 20.80 16 12 O -0.62 -33.22 13.38 -3.06 -0.04 -33.26 16 13 N -0.46 -22.77 3.02 -658.87 -1.99 -24.76 16 14 C 0.12 4.90 7.20 127.77 0.92 5.82 16 15 C -0.34 -18.83 9.24 84.04 0.78 -18.05 16 16 H 0.07 4.10 7.47 -2.91 -0.02 4.08 16 17 C 0.00 -0.16 5.10 84.93 0.43 0.28 16 18 N -0.90 -46.50 10.65 21.66 0.23 -46.27 16 19 Si 0.98 42.07 29.57 68.60 2.03 44.10 16 20 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 H 0.04 1.40 5.60 -2.39 -0.01 1.39 16 24 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.06 2.46 5.54 -2.39 -0.01 2.45 16 26 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.71 6.19 -2.39 -0.01 1.70 16 31 H 0.09 2.56 5.17 -2.39 -0.01 2.55 16 32 H 0.05 2.24 6.92 -2.39 -0.02 2.22 16 33 H 0.07 2.26 5.93 -2.38 -0.01 2.24 16 34 H 0.05 1.98 6.69 -2.39 -0.02 1.96 16 35 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 Total: -1.00 -67.92 272.17 5.25 -62.67 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 1.09 Total: 13.58 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 3.95 Total: -0.28 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -1.76 Total: -71.02 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -0.07 Total: -49.05 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -67.92 5.25 -62.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345404685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.526 kcal (2) G-P(sol) polarization free energy of solvation -67.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds