Wall clock time and date at job start Sun Mar 29 2020 21:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47966 * 2 1 4 4 C 1.53222 * 109.48436 * 120.02994 * 2 1 3 5 5 C 1.51264 * 108.53934 * 174.62016 * 4 2 1 6 6 O 1.20761 * 120.85301 * 128.62802 * 5 4 2 7 7 C 1.51271 * 118.30288 * 308.65403 * 5 4 2 8 8 C 1.53234 * 108.53502 * 51.34492 * 7 5 4 9 9 C 1.52958 * 109.48300 * 239.98056 * 2 1 3 10 10 H 1.09007 * 109.40734 * 296.51243 * 9 2 1 11 11 C 1.50694 * 109.41746 * 56.29679 * 9 2 1 12 12 O 1.21298 * 120.00038 * 24.50236 * 11 9 2 13 13 N 1.34772 * 120.00625 * 204.50324 * 11 9 2 14 14 C 1.46502 * 119.99529 * 4.77769 * 13 11 9 15 15 C 1.37104 * 120.00410 * 184.78177 * 13 11 9 16 16 H 1.07991 * 119.99736 * 9.47270 * 15 13 11 17 17 C 1.38948 * 119.99681 * 189.47078 * 15 13 11 18 18 N 1.31415 * 120.00463 * 11.13254 * 17 15 13 19 19 Si 1.86805 * 119.99736 * 191.12538 * 17 15 13 20 20 H 1.48500 * 109.46596 * 60.00410 * 19 17 15 21 21 H 1.48501 * 109.47072 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46921 * 300.00478 * 19 17 15 23 23 H 1.08998 * 109.47400 * 293.57221 * 1 2 3 24 24 H 1.09004 * 109.47440 * 53.56966 * 1 2 3 25 25 H 1.09000 * 109.47351 * 173.57448 * 1 2 3 26 26 H 1.09002 * 109.62913 * 294.33886 * 4 2 1 27 27 H 1.09001 * 109.62644 * 54.90719 * 4 2 1 28 28 H 1.09001 * 109.62933 * 171.05724 * 7 5 4 29 29 H 1.08994 * 109.62666 * 291.63618 * 7 5 4 30 30 H 1.08999 * 109.48302 * 65.35437 * 8 7 5 31 31 H 1.09000 * 109.48406 * 185.38041 * 8 7 5 32 32 H 1.08998 * 109.47418 * 354.61279 * 14 13 11 33 33 H 1.09002 * 109.46824 * 114.61779 * 14 13 11 34 34 H 1.09008 * 109.47361 * 234.61170 * 14 13 11 35 35 H 0.97001 * 120.00135 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0410 -0.7229 1.2506 5 6 3.5475 -0.8279 1.1635 6 8 4.2474 -0.4671 2.0791 7 6 4.1551 -1.3958 -0.1001 8 6 3.5673 -0.6485 -1.3017 9 6 2.0401 -0.7214 -1.2486 10 1 1.7282 -1.7654 -1.2165 11 6 1.4637 -0.0656 -2.4768 12 8 1.1065 1.0929 -2.4347 13 7 1.3451 -0.7660 -3.6221 14 6 1.6779 -2.1925 -3.6460 15 6 0.9129 -0.1436 -4.7647 16 1 0.8143 0.9315 -4.7896 17 6 0.6021 -0.8962 -5.8906 18 7 0.5093 -2.2040 -5.8018 19 14 0.3158 -0.0488 -7.5306 20 1 1.5392 0.6957 -7.9232 21 1 0.0015 -1.0664 -8.5654 22 1 -0.8215 0.8981 -7.4066 23 1 -0.3634 0.4110 0.9419 24 1 -0.3634 0.6103 -0.8268 25 1 -0.3634 -1.0212 -0.1150 26 1 1.7643 -0.1564 2.1398 27 1 1.6067 -1.7214 1.2994 28 1 5.2366 -1.2616 -0.0787 29 1 3.9164 -2.4566 -0.1763 30 1 3.8826 0.3945 -1.2709 31 1 3.9215 -1.1081 -2.2244 32 1 2.0899 -2.4858 -2.6804 33 1 0.7773 -2.7723 -3.8481 34 1 2.4142 -2.3808 -4.4275 35 1 0.2920 -2.7293 -6.5877 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345404690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:22 Heat of formation + Delta-G solvation = -77.604263 kcal Electronic energy + Delta-G solvation = -17868.701138 eV Core-core repulsion = 15059.707523 eV Total energy + Delta-G solvation = -2808.993615 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.12636 -38.59479 -36.07781 -34.62189 -32.41154 -31.51125 -29.14117 -26.86648 -26.16101 -24.34946 -22.49762 -21.08735 -19.33984 -18.44224 -16.94296 -16.22959 -15.53930 -15.41802 -14.80946 -14.59974 -14.43887 -14.00293 -13.51627 -13.12406 -12.73670 -12.49206 -12.10934 -11.97661 -11.83926 -11.57287 -11.34795 -11.12817 -11.01395 -10.92950 -10.57462 -10.47351 -10.41573 -10.32936 -9.97677 -9.27097 -9.08103 -8.29909 -7.81403 -6.25361 -3.84045 2.01874 3.16342 3.22688 3.26750 3.83744 4.09079 4.20110 4.72872 4.82297 4.89185 5.07905 5.21402 5.30191 5.35469 5.49779 5.61405 5.64398 5.83306 5.92482 5.96803 6.01978 6.07980 6.17444 6.31552 6.34079 6.50581 6.66486 6.80585 6.95033 7.37391 7.55185 7.56480 8.06372 8.47878 9.18054 9.44183 9.97959 10.68514 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.042082 B = 0.006541 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.213960 B = 4279.478110 C = 4507.666007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 H 0.081 0.919 4 C -0.165 4.165 5 C 0.365 3.635 6 O -0.469 6.469 7 C -0.168 4.168 8 C -0.102 4.102 9 C -0.102 4.102 10 H 0.088 0.912 11 C 0.448 3.552 12 O -0.592 6.592 13 N -0.446 5.446 14 C 0.103 3.897 15 C -0.302 4.302 16 H 0.102 0.898 17 C 0.027 3.973 18 N -0.887 5.887 19 Si 0.928 3.072 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.029 0.971 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.204 -3.152 7.913 9.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 H 0.099 0.901 4 C -0.203 4.203 5 C 0.242 3.758 6 O -0.343 6.343 7 C -0.205 4.205 8 C -0.140 4.140 9 C -0.123 4.123 10 H 0.106 0.894 11 C 0.236 3.764 12 O -0.477 6.477 13 N -0.163 5.163 14 C -0.040 4.040 15 C -0.430 4.430 16 H 0.120 0.880 17 C -0.175 4.175 18 N -0.528 5.528 19 Si 0.755 3.245 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.199 1.199 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.346 -2.575 8.234 9.253 hybrid contribution -0.175 0.006 -1.036 1.051 sum 3.171 -2.568 7.198 8.274 Atomic orbital electron populations 1.21863 0.94106 1.02092 1.02419 1.20823 0.96794 0.99612 0.90790 0.90097 1.22447 0.93917 1.03338 1.00614 1.24987 0.91813 0.72292 0.86706 1.90374 1.65599 1.38400 1.39969 1.22334 1.01714 1.01924 0.94571 1.21457 0.94141 1.01236 0.97153 1.21340 0.95309 1.00915 0.94770 0.89428 1.19684 0.85329 0.87601 0.83794 1.90495 1.55046 1.18002 1.84199 1.43691 1.56011 1.08688 1.07946 1.21878 1.02458 0.82573 0.97106 1.19722 1.41774 0.93611 0.87853 0.88012 1.25283 0.96710 0.95512 0.99956 1.70043 1.47935 1.04771 1.30018 0.85958 0.79037 0.78626 0.80853 1.19982 1.20944 1.19853 0.93296 0.90201 0.93138 0.89491 0.88433 0.89444 0.88285 0.91081 0.90138 0.95250 0.89600 0.93021 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.72 37.16 0.32 -1.99 16 2 C -0.06 -0.94 1.91 -90.53 -0.17 -1.12 16 3 H 0.08 1.39 7.99 -51.93 -0.42 0.97 16 4 C -0.17 -2.07 5.45 -27.49 -0.15 -2.22 16 5 C 0.37 5.02 6.72 -28.48 -0.19 4.82 16 6 O -0.47 -7.80 17.89 6.00 0.11 -7.69 16 7 C -0.17 -2.03 6.17 -27.48 -0.17 -2.20 16 8 C -0.10 -1.50 5.05 -26.62 -0.13 -1.64 16 9 C -0.10 -1.71 1.16 -91.80 -0.11 -1.82 16 10 H 0.09 1.35 6.23 -51.92 -0.32 1.02 16 11 C 0.45 10.19 6.00 -10.99 -0.07 10.13 16 12 O -0.59 -15.47 14.36 5.54 0.08 -15.39 16 13 N -0.45 -10.93 3.03 -122.19 -0.37 -11.30 16 14 C 0.10 2.21 8.61 59.85 0.51 2.73 16 15 C -0.30 -8.20 9.50 -14.93 -0.14 -8.34 16 16 H 0.10 2.91 7.25 -52.49 -0.38 2.53 16 17 C 0.03 0.70 5.34 -17.47 -0.09 0.61 16 18 N -0.89 -22.82 9.85 55.50 0.55 -22.27 16 19 Si 0.93 20.47 29.57 -169.99 -5.03 15.45 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 1.54 6.34 -51.93 -0.33 1.21 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.20 7.85 -51.93 -0.41 0.79 16 32 H 0.03 0.50 5.09 -51.93 -0.26 0.24 16 33 H 0.09 1.99 6.55 -51.93 -0.34 1.65 16 34 H 0.05 1.15 7.67 -51.92 -0.40 0.75 16 35 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 280.92 15.07 4.23 4.23 Total: -1.00 -30.25 280.92 -5.77 -36.02 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.95 Total: 1.98 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.39 Total: -1.03 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.18 Total: -33.57 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.19 Total: -23.08 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.25 -5.77 -36.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345404690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.586 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds