Wall clock time and date at job start Sun Mar 29 2020 21:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47966 * 2 1 4 4 C 1.53222 * 109.48436 * 120.02994 * 2 1 3 5 5 C 1.51264 * 108.53934 * 174.62016 * 4 2 1 6 6 O 1.20761 * 120.85301 * 128.62802 * 5 4 2 7 7 C 1.51271 * 118.30288 * 308.65403 * 5 4 2 8 8 C 1.53234 * 108.53502 * 51.34492 * 7 5 4 9 9 C 1.52958 * 109.48300 * 239.98056 * 2 1 3 10 10 H 1.09007 * 109.40734 * 296.51243 * 9 2 1 11 11 C 1.50694 * 109.41746 * 56.29679 * 9 2 1 12 12 O 1.21298 * 120.00038 * 24.50236 * 11 9 2 13 13 N 1.34772 * 120.00625 * 204.50324 * 11 9 2 14 14 C 1.46502 * 119.99529 * 4.77769 * 13 11 9 15 15 C 1.37104 * 120.00410 * 184.78177 * 13 11 9 16 16 H 1.07991 * 119.99736 * 9.47270 * 15 13 11 17 17 C 1.38948 * 119.99681 * 189.47078 * 15 13 11 18 18 N 1.31415 * 120.00463 * 11.13254 * 17 15 13 19 19 Si 1.86805 * 119.99736 * 191.12538 * 17 15 13 20 20 H 1.48500 * 109.46596 * 60.00410 * 19 17 15 21 21 H 1.48501 * 109.47072 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46921 * 300.00478 * 19 17 15 23 23 H 1.08998 * 109.47400 * 293.57221 * 1 2 3 24 24 H 1.09004 * 109.47440 * 53.56966 * 1 2 3 25 25 H 1.09000 * 109.47351 * 173.57448 * 1 2 3 26 26 H 1.09002 * 109.62913 * 294.33886 * 4 2 1 27 27 H 1.09001 * 109.62644 * 54.90719 * 4 2 1 28 28 H 1.09001 * 109.62933 * 171.05724 * 7 5 4 29 29 H 1.08994 * 109.62666 * 291.63618 * 7 5 4 30 30 H 1.08999 * 109.48302 * 65.35437 * 8 7 5 31 31 H 1.09000 * 109.48406 * 185.38041 * 8 7 5 32 32 H 1.08998 * 109.47418 * 354.61279 * 14 13 11 33 33 H 1.09002 * 109.46824 * 114.61779 * 14 13 11 34 34 H 1.09008 * 109.47361 * 234.61170 * 14 13 11 35 35 H 0.97001 * 120.00135 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0410 -0.7229 1.2506 5 6 3.5475 -0.8279 1.1635 6 8 4.2474 -0.4671 2.0791 7 6 4.1551 -1.3958 -0.1001 8 6 3.5673 -0.6485 -1.3017 9 6 2.0401 -0.7214 -1.2486 10 1 1.7282 -1.7654 -1.2165 11 6 1.4637 -0.0656 -2.4768 12 8 1.1065 1.0929 -2.4347 13 7 1.3451 -0.7660 -3.6221 14 6 1.6779 -2.1925 -3.6460 15 6 0.9129 -0.1436 -4.7647 16 1 0.8143 0.9315 -4.7896 17 6 0.6021 -0.8962 -5.8906 18 7 0.5093 -2.2040 -5.8018 19 14 0.3158 -0.0488 -7.5306 20 1 1.5392 0.6957 -7.9232 21 1 0.0015 -1.0664 -8.5654 22 1 -0.8215 0.8981 -7.4066 23 1 -0.3634 0.4110 0.9419 24 1 -0.3634 0.6103 -0.8268 25 1 -0.3634 -1.0212 -0.1150 26 1 1.7643 -0.1564 2.1398 27 1 1.6067 -1.7214 1.2994 28 1 5.2366 -1.2616 -0.0787 29 1 3.9164 -2.4566 -0.1763 30 1 3.8826 0.3945 -1.2709 31 1 3.9215 -1.1081 -2.2244 32 1 2.0899 -2.4858 -2.6804 33 1 0.7773 -2.7723 -3.8481 34 1 2.4142 -2.3808 -4.4275 35 1 0.2920 -2.7293 -6.5877 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345404690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:21 Heat of formation + Delta-G solvation = -96.346308 kcal Electronic energy + Delta-G solvation = -17869.513854 eV Core-core repulsion = 15059.707523 eV Total energy + Delta-G solvation = -2809.806331 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.45884 -40.10247 -37.52990 -36.48297 -33.80603 -33.22476 -30.44393 -28.32383 -27.73291 -26.14937 -23.77924 -22.45172 -20.60089 -19.90912 -18.87926 -17.93534 -16.82294 -16.53940 -16.45032 -16.02498 -15.90906 -15.57385 -15.04656 -14.62836 -14.15081 -14.01997 -13.46585 -13.27320 -13.18049 -12.97277 -12.88291 -12.80828 -12.57746 -12.41638 -12.23545 -12.12054 -11.84983 -11.71439 -11.38695 -11.01057 -10.38521 -10.14194 -9.75495 -8.20419 -5.88190 0.95204 1.38818 1.41490 1.51200 2.07624 2.28031 3.06308 3.14978 3.20618 3.64387 3.75884 3.90594 4.03807 4.27125 4.29658 4.39326 4.43123 4.63480 4.67912 4.74790 4.81706 4.91337 4.94980 5.08186 5.14242 5.18536 5.27413 5.39753 5.46786 5.49092 5.62078 6.10507 6.50106 6.53905 7.22437 7.57122 8.11446 8.69887 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.042082 B = 0.006541 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.213960 B = 4279.478110 C = 4507.666007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 H 0.055 0.945 4 C -0.155 4.155 5 C 0.368 3.632 6 O -0.500 6.500 7 C -0.157 4.157 8 C -0.097 4.097 9 C -0.093 4.093 10 H 0.114 0.886 11 C 0.443 3.557 12 O -0.634 6.634 13 N -0.464 5.464 14 C 0.113 3.887 15 C -0.341 4.341 16 H 0.072 0.928 17 C -0.003 4.003 18 N -0.895 5.895 19 Si 0.985 3.015 20 H -0.273 1.273 21 H -0.269 1.269 22 H -0.277 1.277 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.131 0.869 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 -5.018 8.775 10.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 H 0.073 0.927 4 C -0.192 4.192 5 C 0.247 3.753 6 O -0.377 6.377 7 C -0.194 4.194 8 C -0.135 4.135 9 C -0.115 4.115 10 H 0.132 0.868 11 C 0.233 3.767 12 O -0.522 6.522 13 N -0.182 5.182 14 C -0.029 4.029 15 C -0.469 4.469 16 H 0.090 0.910 17 C -0.204 4.204 18 N -0.535 5.535 19 Si 0.809 3.191 20 H -0.198 1.198 21 H -0.193 1.193 22 H -0.203 1.203 23 H 0.091 0.909 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.113 0.887 27 H 0.149 0.851 28 H 0.116 0.884 29 H 0.152 0.848 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.841 -4.471 9.097 10.839 hybrid contribution -0.363 0.632 -1.289 1.481 sum 3.478 -3.839 7.807 9.370 Atomic orbital electron populations 1.21806 0.94309 1.02216 1.01842 1.20743 0.96600 0.98624 0.91719 0.92666 1.22389 0.93161 1.04829 0.98841 1.25287 0.92194 0.71155 0.86678 1.90383 1.66258 1.39765 1.41294 1.22307 1.02019 1.03236 0.91860 1.21386 0.92501 1.00832 0.98829 1.21365 0.96457 1.01593 0.92036 0.86840 1.20778 0.83841 0.87162 0.84932 1.90466 1.56408 1.20204 1.85170 1.43941 1.56451 1.09933 1.07855 1.21784 1.01301 0.80610 0.99223 1.19632 1.44356 0.92810 0.90101 0.91016 1.25942 0.95938 0.96240 1.02263 1.70140 1.47265 1.05237 1.30847 0.85120 0.78620 0.77910 0.77430 1.19801 1.19348 1.20303 0.90901 0.94705 0.91650 0.88660 0.85111 0.88416 0.84823 0.92951 0.89978 0.90611 0.91513 0.94391 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 8.72 71.98 0.63 -3.73 16 2 C -0.06 -1.69 1.91 -10.73 -0.02 -1.71 16 3 H 0.05 1.90 7.99 -2.38 -0.02 1.88 16 4 C -0.15 -3.32 5.45 30.10 0.16 -3.16 16 5 C 0.37 8.93 6.72 29.46 0.20 9.13 16 6 O -0.50 -15.47 17.89 -1.45 -0.03 -15.50 16 7 C -0.16 -3.19 6.17 30.11 0.19 -3.00 16 8 C -0.10 -2.68 5.05 30.67 0.15 -2.52 16 9 C -0.09 -2.97 1.16 -11.56 -0.01 -2.99 16 10 H 0.11 3.03 6.23 -2.38 -0.01 3.02 16 11 C 0.44 20.41 6.00 87.66 0.53 20.94 16 12 O -0.63 -34.65 14.36 -3.08 -0.04 -34.69 16 13 N -0.46 -23.02 3.03 -658.88 -1.99 -25.02 16 14 C 0.11 4.73 8.61 127.77 1.10 5.83 16 15 C -0.34 -19.11 9.50 84.04 0.80 -18.31 16 16 H 0.07 4.34 7.25 -2.92 -0.02 4.32 16 17 C 0.00 -0.15 5.34 84.93 0.45 0.31 16 18 N -0.89 -45.79 9.85 21.66 0.21 -45.58 16 19 Si 0.99 42.18 29.57 68.60 2.03 44.20 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.03 1.36 6.34 -2.38 -0.02 1.35 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.13 1.88 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 2.26 7.85 -2.39 -0.02 2.24 16 32 H 0.08 2.37 5.09 -2.39 -0.01 2.36 16 33 H 0.07 3.04 6.55 -2.39 -0.02 3.03 16 34 H 0.04 1.66 7.67 -2.38 -0.02 1.64 16 35 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 Total: -1.00 -68.53 280.92 5.43 -63.10 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.08 Total: 12.71 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 4.17 Total: 0.78 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -1.78 Total: -70.60 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -0.07 Total: -50.19 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -68.53 5.43 -63.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345404690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.251 kcal (2) G-P(sol) polarization free energy of solvation -68.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds