Wall clock time and date at job start Sun Mar 29 2020 21:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.62390 * 2 1 4 4 C 1.53229 * 109.62151 * 239.62303 * 2 1 3 5 5 C 1.52956 * 109.40790 * 294.72174 * 4 2 1 6 6 H 1.08998 * 109.41232 * 56.50627 * 5 4 2 7 7 C 1.50702 * 109.41479 * 176.29903 * 5 4 2 8 8 O 1.21290 * 120.00073 * 7.66293 * 7 5 4 9 9 N 1.34772 * 119.99920 * 187.67157 * 7 5 4 10 10 C 1.46505 * 120.00158 * 183.61371 * 9 7 5 11 11 C 1.37099 * 120.00096 * 3.60437 * 9 7 5 12 12 H 1.08003 * 120.00352 * 346.56398 * 11 9 7 13 13 C 1.38955 * 120.00068 * 166.55503 * 11 9 7 14 14 N 1.31419 * 119.99902 * 8.66590 * 13 11 9 15 15 Si 1.86793 * 119.99997 * 188.66243 * 13 11 9 16 16 H 1.48498 * 109.47463 * 90.00479 * 15 13 11 17 17 H 1.48510 * 109.46972 * 210.00216 * 15 13 11 18 18 H 1.48492 * 109.47539 * 330.00079 * 15 13 11 19 19 C 1.52962 * 109.81624 * 296.40384 * 5 4 2 20 20 C 1.53229 * 109.40350 * 63.59804 * 19 5 4 21 21 C 1.51265 * 108.53539 * 305.37127 * 20 19 5 22 22 O 1.20764 * 120.84970 * 231.37105 * 21 20 19 23 23 H 1.09000 * 109.47265 * 180.37836 * 1 2 3 24 24 H 1.09002 * 109.46679 * 300.37342 * 1 2 3 25 25 H 1.08997 * 109.47261 * 60.37267 * 1 2 3 26 26 H 1.09000 * 109.48568 * 54.70218 * 4 2 1 27 27 H 1.09002 * 109.48093 * 174.73935 * 4 2 1 28 28 H 1.08997 * 109.46923 * 5.48251 * 10 9 7 29 29 H 1.09001 * 109.47334 * 125.48874 * 10 9 7 30 30 H 1.09003 * 109.46712 * 245.49419 * 10 9 7 31 31 H 0.96994 * 120.00180 * 179.97438 * 14 13 11 32 32 H 1.08999 * 109.48164 * 303.61441 * 19 5 4 33 33 H 1.09000 * 109.49438 * 183.58723 * 19 5 4 34 34 H 1.09003 * 109.62316 * 185.66087 * 20 19 5 35 35 H 1.09000 * 109.78727 * 65.18171 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0446 -0.7299 -1.2452 5 6 1.6470 -2.2049 -1.1703 6 1 0.5653 -2.2835 -1.0609 7 6 2.0731 -2.9035 -2.4358 8 8 2.7590 -2.3206 -3.2488 9 7 1.6920 -4.1759 -2.6643 10 6 2.1710 -4.8814 -3.8556 11 6 0.8563 -4.8101 -1.7818 12 1 0.6761 -4.3828 -0.8064 13 6 0.2408 -6.0026 -2.1423 14 7 0.5873 -6.6108 -3.2546 15 14 -1.0788 -6.7413 -1.0459 16 1 -2.4088 -6.2206 -1.4524 17 1 -1.0639 -8.2202 -1.1810 18 1 -0.8130 -6.3707 0.3673 19 6 2.3285 -2.8655 0.0292 20 6 1.8246 -2.2160 1.3223 21 6 2.0420 -0.7222 1.2266 22 8 2.6102 -0.1214 2.1067 23 1 -0.3634 -1.0276 0.0068 24 1 -0.3633 0.5196 0.8867 25 1 -0.3633 0.5080 -0.8933 26 1 1.6074 -0.2803 -2.1368 27 1 3.1305 -0.6480 -1.2918 28 1 2.8947 -4.2579 -4.3806 29 1 2.6453 -5.8166 -3.5579 30 1 1.3293 -5.0944 -4.5146 31 1 0.1579 -7.4434 -3.5061 32 1 3.4077 -2.7331 -0.0475 33 1 2.0928 -3.9296 0.0410 34 1 2.3800 -2.6131 2.1720 35 1 0.7622 -2.4239 1.4500 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345413050.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:05 Heat of formation + Delta-G solvation = -78.890920 kcal Electronic energy + Delta-G solvation = -17972.016050 eV Core-core repulsion = 15162.966642 eV Total energy + Delta-G solvation = -2809.049409 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.13292 -38.52474 -36.00520 -34.80323 -32.35699 -31.39171 -29.47095 -26.76814 -25.61685 -24.41548 -22.47448 -21.66476 -19.13617 -18.19086 -17.31090 -16.17210 -15.52997 -15.20896 -14.65910 -14.43486 -14.24679 -13.93459 -13.57695 -13.24740 -12.72159 -12.55636 -12.40290 -11.94374 -11.68520 -11.57826 -11.36578 -11.16721 -11.04550 -10.91827 -10.64922 -10.43911 -10.41367 -10.19494 -10.03760 -9.13142 -9.05962 -8.35397 -7.91676 -6.36349 -3.96358 2.11648 3.04321 3.13153 3.15328 3.84076 3.99387 4.25087 4.71805 4.86644 4.97596 5.06214 5.18721 5.32911 5.41822 5.58394 5.70699 5.78198 5.80453 5.89628 6.04373 6.09953 6.21735 6.31957 6.40457 6.44710 6.70389 6.74406 6.91342 7.21450 7.34402 7.47872 7.64147 7.72341 8.33367 9.00547 9.50073 9.89887 10.58186 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.008546 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.077922 B = 3275.530937 C = 3891.786108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 H 0.090 0.910 4 C -0.087 4.087 5 C -0.093 4.093 6 H 0.094 0.906 7 C 0.453 3.547 8 O -0.615 6.615 9 N -0.444 5.444 10 C 0.121 3.879 11 C -0.336 4.336 12 H 0.106 0.894 13 C 0.035 3.965 14 N -0.872 5.872 15 Si 0.922 3.078 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.269 1.269 19 C -0.111 4.111 20 C -0.167 4.167 21 C 0.371 3.629 22 O -0.470 6.470 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.267 0.733 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 5.281 5.987 8.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 H 0.108 0.892 4 C -0.125 4.125 5 C -0.114 4.114 6 H 0.112 0.888 7 C 0.242 3.758 8 O -0.503 6.503 9 N -0.161 5.161 10 C -0.022 4.022 11 C -0.464 4.464 12 H 0.124 0.876 13 C -0.169 4.169 14 N -0.511 5.511 15 Si 0.748 3.252 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.149 4.149 20 C -0.205 4.205 21 C 0.247 3.753 22 O -0.344 6.344 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.757 5.632 5.927 8.362 hybrid contribution -0.814 -0.713 0.438 1.167 sum -2.570 4.918 6.364 8.444 Atomic orbital electron populations 1.21787 0.92750 1.03177 1.02286 1.21976 0.97972 1.00590 0.95399 0.89178 1.21363 1.01634 0.94002 0.95463 1.21051 1.01898 0.94169 0.94272 0.88822 1.19845 0.84996 0.82427 0.88577 1.90515 1.44639 1.66014 1.49092 1.43700 1.40955 1.09858 1.21570 1.21542 0.98604 0.94455 0.87586 1.19849 1.22387 1.06189 0.97931 0.87610 1.25369 0.97987 0.96806 0.96739 1.70208 1.40558 1.17255 1.23041 0.86003 0.80973 0.78305 0.79888 1.20192 1.20830 1.19311 1.21632 1.00156 1.02144 0.90934 1.22316 1.04021 0.93658 1.00489 1.25020 0.73382 0.91576 0.85293 1.90356 1.33040 1.70959 1.40089 0.91217 0.92709 0.91275 0.90391 0.91249 0.94783 0.92273 0.91444 0.92180 0.91831 0.88142 0.89592 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.90 37.16 0.33 -1.33 16 2 C -0.14 -1.92 3.16 -91.37 -0.29 -2.20 16 3 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 4 C -0.09 -1.40 3.98 -26.64 -0.11 -1.51 16 5 C -0.09 -1.67 1.43 -91.81 -0.13 -1.80 16 6 H 0.09 1.61 5.84 -51.93 -0.30 1.31 16 7 C 0.45 10.50 6.94 -10.99 -0.08 10.43 16 8 O -0.61 -15.88 15.36 5.55 0.09 -15.79 16 9 N -0.44 -10.88 3.03 -122.19 -0.37 -11.25 16 10 C 0.12 2.99 8.87 59.85 0.53 3.52 16 11 C -0.34 -7.95 8.35 -14.93 -0.12 -8.08 16 12 H 0.11 2.26 4.81 -52.48 -0.25 2.01 16 13 C 0.04 0.85 5.46 -17.46 -0.10 0.75 16 14 N -0.87 -21.99 9.58 55.50 0.53 -21.46 16 15 Si 0.92 18.46 29.56 -169.99 -5.03 13.43 16 16 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 17 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 19 C -0.11 -1.82 4.82 -26.63 -0.13 -1.95 16 20 C -0.17 -2.31 5.90 -27.49 -0.16 -2.47 16 21 C 0.37 5.56 6.07 -28.48 -0.17 5.39 16 22 O -0.47 -8.29 17.89 6.00 0.11 -8.18 16 23 H 0.07 0.82 6.01 -51.93 -0.31 0.50 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 27 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 28 H 0.03 0.82 6.94 -51.93 -0.36 0.46 16 29 H 0.06 1.49 7.32 -51.93 -0.38 1.11 16 30 H 0.07 1.73 6.86 -51.93 -0.36 1.37 16 31 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.77 5.62 -51.93 -0.29 1.48 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.20 7.81 -51.93 -0.41 0.80 16 LS Contribution 277.03 15.07 4.17 4.17 Total: -1.00 -28.56 277.03 -5.67 -34.24 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.75 Total: 4.10 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.42 Total: 0.74 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.16 Total: -32.71 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.19 Total: -23.97 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.56 -5.67 -34.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345413050.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.656 kcal (2) G-P(sol) polarization free energy of solvation -28.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds