Wall clock time and date at job start Sun Mar 29 2020 21:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.62390 * 2 1 4 4 C 1.53229 * 109.62151 * 239.62303 * 2 1 3 5 5 C 1.52956 * 109.40790 * 294.72174 * 4 2 1 6 6 H 1.08998 * 109.41232 * 56.50627 * 5 4 2 7 7 C 1.50702 * 109.41479 * 176.29903 * 5 4 2 8 8 O 1.21290 * 120.00073 * 7.66293 * 7 5 4 9 9 N 1.34772 * 119.99920 * 187.67157 * 7 5 4 10 10 C 1.46505 * 120.00158 * 183.61371 * 9 7 5 11 11 C 1.37099 * 120.00096 * 3.60437 * 9 7 5 12 12 H 1.08003 * 120.00352 * 346.56398 * 11 9 7 13 13 C 1.38955 * 120.00068 * 166.55503 * 11 9 7 14 14 N 1.31419 * 119.99902 * 8.66590 * 13 11 9 15 15 Si 1.86793 * 119.99997 * 188.66243 * 13 11 9 16 16 H 1.48498 * 109.47463 * 90.00479 * 15 13 11 17 17 H 1.48510 * 109.46972 * 210.00216 * 15 13 11 18 18 H 1.48492 * 109.47539 * 330.00079 * 15 13 11 19 19 C 1.52962 * 109.81624 * 296.40384 * 5 4 2 20 20 C 1.53229 * 109.40350 * 63.59804 * 19 5 4 21 21 C 1.51265 * 108.53539 * 305.37127 * 20 19 5 22 22 O 1.20764 * 120.84970 * 231.37105 * 21 20 19 23 23 H 1.09000 * 109.47265 * 180.37836 * 1 2 3 24 24 H 1.09002 * 109.46679 * 300.37342 * 1 2 3 25 25 H 1.08997 * 109.47261 * 60.37267 * 1 2 3 26 26 H 1.09000 * 109.48568 * 54.70218 * 4 2 1 27 27 H 1.09002 * 109.48093 * 174.73935 * 4 2 1 28 28 H 1.08997 * 109.46923 * 5.48251 * 10 9 7 29 29 H 1.09001 * 109.47334 * 125.48874 * 10 9 7 30 30 H 1.09003 * 109.46712 * 245.49419 * 10 9 7 31 31 H 0.96994 * 120.00180 * 179.97438 * 14 13 11 32 32 H 1.08999 * 109.48164 * 303.61441 * 19 5 4 33 33 H 1.09000 * 109.49438 * 183.58723 * 19 5 4 34 34 H 1.09003 * 109.62316 * 185.66087 * 20 19 5 35 35 H 1.09000 * 109.78727 * 65.18171 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0446 -0.7299 -1.2452 5 6 1.6470 -2.2049 -1.1703 6 1 0.5653 -2.2835 -1.0609 7 6 2.0731 -2.9035 -2.4358 8 8 2.7590 -2.3206 -3.2488 9 7 1.6920 -4.1759 -2.6643 10 6 2.1710 -4.8814 -3.8556 11 6 0.8563 -4.8101 -1.7818 12 1 0.6761 -4.3828 -0.8064 13 6 0.2408 -6.0026 -2.1423 14 7 0.5873 -6.6108 -3.2546 15 14 -1.0788 -6.7413 -1.0459 16 1 -2.4088 -6.2206 -1.4524 17 1 -1.0639 -8.2202 -1.1810 18 1 -0.8130 -6.3707 0.3673 19 6 2.3285 -2.8655 0.0292 20 6 1.8246 -2.2160 1.3223 21 6 2.0420 -0.7222 1.2266 22 8 2.6102 -0.1214 2.1067 23 1 -0.3634 -1.0276 0.0068 24 1 -0.3633 0.5196 0.8867 25 1 -0.3633 0.5080 -0.8933 26 1 1.6074 -0.2803 -2.1368 27 1 3.1305 -0.6480 -1.2918 28 1 2.8947 -4.2579 -4.3806 29 1 2.6453 -5.8166 -3.5579 30 1 1.3293 -5.0944 -4.5146 31 1 0.1579 -7.4434 -3.5061 32 1 3.4077 -2.7331 -0.0475 33 1 2.0928 -3.9296 0.0410 34 1 2.3800 -2.6131 2.1720 35 1 0.7622 -2.4239 1.4500 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345413050.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:05 Heat of formation + Delta-G solvation = -95.431104 kcal Electronic energy + Delta-G solvation = -17972.733287 eV Core-core repulsion = 15162.966642 eV Total energy + Delta-G solvation = -2809.766645 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.50324 -40.16700 -37.42365 -36.67980 -33.65286 -33.14890 -30.83683 -28.45163 -27.01966 -26.13992 -23.68454 -23.11808 -20.91227 -19.48112 -18.92877 -17.90977 -16.90143 -16.41588 -16.25628 -16.00032 -15.83425 -15.50496 -15.05448 -14.63413 -14.25211 -13.89496 -13.57401 -13.38119 -13.32062 -12.99847 -12.88202 -12.66729 -12.55765 -12.43140 -12.06023 -12.04903 -11.88213 -11.72094 -11.34361 -10.95874 -10.28871 -10.20287 -9.85072 -8.18857 -5.85185 0.93393 1.47657 1.52562 1.63369 2.05779 2.32265 2.98999 3.15355 3.20028 3.68083 3.81731 4.01026 4.04389 4.20224 4.37787 4.46755 4.50941 4.60224 4.69192 4.90540 4.91542 5.01245 5.03278 5.06605 5.13989 5.17795 5.26167 5.37144 5.45259 5.46401 5.58317 5.85094 6.46148 6.47127 7.15678 7.64518 8.04035 8.77718 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.008546 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.077922 B = 3275.530937 C = 3891.786108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 H 0.098 0.902 4 C -0.080 4.080 5 C -0.084 4.084 6 H 0.110 0.890 7 C 0.442 3.558 8 O -0.648 6.648 9 N -0.459 5.459 10 C 0.134 3.866 11 C -0.347 4.347 12 H 0.131 0.869 13 C -0.014 4.014 14 N -0.907 5.907 15 Si 0.991 3.009 16 H -0.275 1.275 17 H -0.291 1.291 18 H -0.246 1.246 19 C -0.104 4.104 20 C -0.159 4.159 21 C 0.374 3.626 22 O -0.497 6.497 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.267 0.733 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 5.756 8.113 10.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 H 0.116 0.884 4 C -0.118 4.118 5 C -0.105 4.105 6 H 0.128 0.872 7 C 0.233 3.767 8 O -0.538 6.538 9 N -0.176 5.176 10 C -0.009 4.009 11 C -0.474 4.474 12 H 0.148 0.852 13 C -0.214 4.214 14 N -0.546 5.546 15 Si 0.814 3.186 16 H -0.201 1.201 17 H -0.217 1.217 18 H -0.169 1.169 19 C -0.142 4.142 20 C -0.196 4.196 21 C 0.253 3.747 22 O -0.374 6.374 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.383 6.118 8.065 10.674 hybrid contribution -0.239 -0.855 -0.309 0.940 sum -3.622 5.263 7.757 10.049 Atomic orbital electron populations 1.21821 0.90678 1.03798 1.03611 1.21925 0.99593 1.00361 0.93196 0.88407 1.21272 1.00609 0.93153 0.96813 1.21055 1.02807 0.94616 0.92053 0.87226 1.20800 0.84061 0.82014 0.89865 1.90486 1.45932 1.66705 1.50677 1.43989 1.41446 1.10578 1.21566 1.21287 0.97739 0.93911 0.87969 1.20382 1.21958 1.06356 0.98721 0.85167 1.26310 0.99823 0.97218 0.98089 1.70335 1.41746 1.17679 1.24878 0.84944 0.77823 0.76672 0.79166 1.20051 1.21727 1.16943 1.21518 0.99452 1.01631 0.91602 1.22294 1.05813 0.92469 0.99064 1.25268 0.72315 0.92086 0.85079 1.90362 1.34187 1.71575 1.41228 0.90916 0.91058 0.90407 0.90874 0.93008 0.95386 0.93344 0.92782 0.92323 0.92976 0.89010 0.88429 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.90 71.98 0.64 -2.15 16 2 C -0.13 -3.25 3.16 -11.28 -0.04 -3.29 16 3 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.08 -2.50 3.98 30.66 0.12 -2.38 16 5 C -0.08 -2.91 1.43 -11.57 -0.02 -2.93 16 6 H 0.11 3.46 5.84 -2.39 -0.01 3.44 16 7 C 0.44 20.48 6.94 87.66 0.61 21.09 16 8 O -0.65 -34.02 15.36 -3.06 -0.05 -34.06 16 9 N -0.46 -22.58 3.03 -658.87 -1.99 -24.57 16 10 C 0.13 6.85 8.87 127.77 1.13 7.98 16 11 C -0.35 -16.03 8.35 84.04 0.70 -15.33 16 12 H 0.13 5.21 4.81 -2.91 -0.01 5.20 16 13 C -0.01 -0.64 5.46 84.93 0.46 -0.18 16 14 N -0.91 -46.12 9.58 21.67 0.21 -45.91 16 15 Si 0.99 36.37 29.56 68.60 2.03 38.40 16 16 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 17 H -0.29 -11.02 7.11 99.48 0.71 -10.32 16 18 H -0.25 -8.10 7.11 99.48 0.71 -7.40 16 19 C -0.10 -3.21 4.82 30.66 0.15 -3.06 16 20 C -0.16 -3.86 5.90 30.10 0.18 -3.68 16 21 C 0.37 10.20 6.07 29.46 0.18 10.38 16 22 O -0.50 -16.42 17.89 -1.46 -0.03 -16.45 16 23 H 0.07 1.39 6.01 -2.39 -0.01 1.38 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.07 2.35 8.10 -2.39 -0.02 2.33 16 27 H 0.05 1.78 8.11 -2.39 -0.02 1.76 16 28 H 0.03 1.41 6.94 -2.39 -0.02 1.39 16 29 H 0.05 2.51 7.32 -2.39 -0.02 2.50 16 30 H 0.05 2.86 6.86 -2.39 -0.02 2.84 16 31 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 3.03 5.62 -2.39 -0.01 3.02 16 34 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.13 2.45 7.81 -2.39 -0.02 2.43 16 Total: -1.00 -61.34 277.03 5.38 -55.96 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 1.09 Total: 20.19 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 4.12 Total: 6.45 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -1.79 Total: -70.48 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.07 Total: -50.51 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -61.34 5.38 -55.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345413050.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.473 kcal (2) G-P(sol) polarization free energy of solvation -61.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds