Wall clock time and date at job start Sun Mar 29 2020 21:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.61856 * 2 1 4 4 C 1.53228 * 109.62834 * 120.57519 * 2 1 3 5 5 C 1.52950 * 109.40539 * 174.34206 * 4 2 1 6 6 H 1.09001 * 109.41222 * 56.51187 * 5 4 2 7 7 C 1.50705 * 109.35721 * 176.33340 * 5 4 2 8 8 O 1.21290 * 120.00012 * 6.79560 * 7 5 4 9 9 N 1.34777 * 119.99913 * 186.80656 * 7 5 4 10 10 C 1.46499 * 119.99551 * 183.29587 * 9 7 5 11 11 C 1.37095 * 120.00075 * 3.29000 * 9 7 5 12 12 H 1.07993 * 120.00216 * 8.03150 * 11 9 7 13 13 C 1.38952 * 119.99784 * 188.03377 * 11 9 7 14 14 N 1.31413 * 119.99924 * 7.00777 * 13 11 9 15 15 Si 1.86803 * 120.00027 * 187.01056 * 13 11 9 16 16 H 1.48501 * 109.47064 * 59.99710 * 15 13 11 17 17 H 1.48499 * 109.46877 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46853 * 299.99846 * 15 13 11 19 19 C 1.52954 * 109.81928 * 296.40401 * 5 4 2 20 20 C 1.53231 * 109.40865 * 63.59586 * 19 5 4 21 21 C 1.51266 * 108.53309 * 305.37710 * 20 19 5 22 22 O 1.20758 * 120.84795 * 231.36162 * 21 20 19 23 23 H 1.09004 * 109.46554 * 180.37941 * 1 2 3 24 24 H 1.08991 * 109.47184 * 300.37655 * 1 2 3 25 25 H 1.08998 * 109.47025 * 60.38161 * 1 2 3 26 26 H 1.09001 * 109.48196 * 54.36305 * 4 2 1 27 27 H 1.09000 * 109.48126 * 294.32656 * 4 2 1 28 28 H 1.09002 * 109.47367 * 355.33089 * 10 9 7 29 29 H 1.08998 * 109.47543 * 115.33632 * 10 9 7 30 30 H 1.09006 * 109.46998 * 235.33659 * 10 9 7 31 31 H 0.97004 * 119.99693 * 179.97438 * 14 13 11 32 32 H 1.09003 * 109.48882 * 183.57879 * 19 5 4 33 33 H 1.09000 * 109.48294 * 303.60221 * 19 5 4 34 34 H 1.08999 * 109.62275 * 65.08757 * 20 19 5 35 35 H 1.08990 * 109.62782 * 185.46521 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0448 -0.7341 1.2426 5 6 3.5676 -0.8548 1.1671 6 1 4.0049 0.1381 1.0613 7 6 4.0811 -1.4961 2.4306 8 8 3.3004 -1.9351 3.2484 9 7 5.4079 -1.5816 2.6517 10 6 5.9087 -2.2689 3.8446 11 6 6.2887 -1.0256 1.7604 12 1 5.9226 -0.4093 0.9526 13 6 7.6524 -1.2549 1.8963 14 7 8.0884 -2.1124 2.7917 15 14 8.8659 -0.3443 0.8065 16 1 8.7247 1.1181 1.0227 17 1 10.2490 -0.7634 1.1480 18 1 8.5886 -0.6632 -0.6170 19 6 3.9608 -1.7143 -0.0354 20 6 3.5183 -1.0171 -1.3261 21 6 2.0381 -0.7206 -1.2292 22 8 1.2814 -1.0508 -2.1104 23 1 -0.3632 -1.0277 0.0068 24 1 -0.3633 0.5196 0.8865 25 1 -0.3633 0.5079 -0.8934 26 1 1.6029 -1.7296 1.2857 27 1 1.7682 -0.1745 2.1361 28 1 5.0684 -2.5697 4.4704 29 1 6.4732 -3.1519 3.5452 30 1 6.5572 -1.5963 4.4061 31 1 9.0404 -2.2727 2.8863 32 1 5.0424 -1.8495 -0.0477 33 1 3.4739 -2.6868 0.0381 34 1 4.0712 -0.0856 -1.4471 35 1 3.7089 -1.6693 -2.1783 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345413052.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:09 Heat of formation + Delta-G solvation = -81.686406 kcal Electronic energy + Delta-G solvation = -17840.411533 eV Core-core repulsion = 15031.240903 eV Total energy + Delta-G solvation = -2809.170630 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.05457 -38.54484 -35.74029 -34.79033 -32.70337 -31.41332 -29.35104 -26.73669 -25.59551 -24.45244 -22.13417 -21.45686 -19.03475 -18.82452 -17.02176 -16.10240 -15.68283 -15.31870 -14.63655 -14.42734 -14.35423 -13.84877 -13.48912 -13.07207 -12.65450 -12.54192 -12.18717 -11.88446 -11.66935 -11.49155 -11.35470 -11.10963 -11.02537 -10.90162 -10.63661 -10.44921 -10.42816 -10.33897 -10.14397 -9.20441 -9.03454 -8.34748 -7.92227 -6.33208 -3.96047 2.15518 3.04922 3.13551 3.14533 3.83411 3.99532 4.24616 4.68020 4.94737 5.01205 5.09631 5.19334 5.42132 5.45711 5.60866 5.72575 5.75414 5.87635 5.96162 6.07878 6.12949 6.23225 6.36223 6.40208 6.46742 6.73635 6.79714 6.90580 7.17635 7.31751 7.47750 7.69039 7.71269 8.33427 9.00659 9.49409 9.89198 10.58709 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.008000 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.399194 B = 3498.950017 C = 4222.329171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 H 0.102 0.898 4 C -0.084 4.084 5 C -0.091 4.091 6 H 0.088 0.912 7 C 0.452 3.548 8 O -0.615 6.615 9 N -0.443 5.443 10 C 0.118 3.882 11 C -0.332 4.332 12 H 0.103 0.897 13 C 0.034 3.966 14 N -0.873 5.873 15 Si 0.923 3.077 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.271 1.271 19 C -0.109 4.109 20 C -0.167 4.167 21 C 0.367 3.633 22 O -0.467 6.467 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.268 0.732 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 4.355 -5.373 8.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 H 0.120 0.880 4 C -0.122 4.122 5 C -0.113 4.113 6 H 0.106 0.894 7 C 0.241 3.759 8 O -0.503 6.503 9 N -0.159 5.159 10 C -0.025 4.025 11 C -0.459 4.459 12 H 0.120 0.880 13 C -0.170 4.170 14 N -0.512 5.512 15 Si 0.749 3.251 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.147 4.147 20 C -0.205 4.205 21 C 0.244 3.756 22 O -0.341 6.341 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.463 3.870 -5.344 8.566 hybrid contribution 1.041 0.534 -0.455 1.256 sum -4.422 4.404 -5.799 8.519 Atomic orbital electron populations 1.21630 0.93567 1.02510 1.01701 1.21943 0.97466 1.01199 0.95593 0.88005 1.21356 0.94511 1.01007 0.95338 1.21016 0.95207 1.00470 0.94557 0.89403 1.19828 0.82573 0.85050 0.88480 1.90515 1.55941 1.55198 1.48607 1.43692 1.04104 1.47461 1.20681 1.21561 0.95914 0.98355 0.86702 1.19711 0.87516 1.28933 1.09789 0.87954 1.25317 0.98040 0.96329 0.97344 1.70158 1.15268 1.32175 1.33594 0.86053 0.79417 0.79657 0.79929 1.19833 1.20783 1.19660 1.21573 1.04505 0.97989 0.90603 1.22328 0.94347 1.03190 1.00608 1.25034 0.91140 0.74032 0.85438 1.90339 1.60403 1.43316 1.40034 0.92369 0.92037 0.92414 0.91170 0.90515 0.94591 0.90436 0.93123 0.92115 0.87819 0.91937 0.88408 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.60 37.16 0.32 -1.40 16 2 C -0.14 -1.94 3.01 -91.37 -0.27 -2.21 16 3 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.08 -1.36 3.80 -26.64 -0.10 -1.46 16 5 C -0.09 -1.65 1.59 -91.82 -0.15 -1.80 16 6 H 0.09 1.50 7.29 -51.93 -0.38 1.12 16 7 C 0.45 10.50 6.95 -10.98 -0.08 10.43 16 8 O -0.61 -15.88 15.33 5.55 0.09 -15.79 16 9 N -0.44 -10.86 3.03 -122.19 -0.37 -11.23 16 10 C 0.12 2.90 8.88 59.85 0.53 3.43 16 11 C -0.33 -7.86 7.87 -14.93 -0.12 -7.98 16 12 H 0.10 2.20 5.44 -52.49 -0.29 1.91 16 13 C 0.03 0.81 5.40 -17.47 -0.09 0.72 16 14 N -0.87 -21.99 9.65 55.50 0.54 -21.45 16 15 Si 0.92 18.47 29.56 -169.99 -5.02 13.45 16 16 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 19 C -0.11 -1.82 4.87 -26.64 -0.13 -1.95 16 20 C -0.17 -2.33 6.17 -27.49 -0.17 -2.50 16 21 C 0.37 5.47 6.58 -28.48 -0.19 5.28 16 22 O -0.47 -8.07 16.86 6.00 0.10 -7.97 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 26 H 0.07 1.23 8.11 -51.93 -0.42 0.80 16 27 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 28 H 0.04 0.87 6.91 -51.93 -0.36 0.51 16 29 H 0.08 1.98 6.66 -51.93 -0.35 1.64 16 30 H 0.05 1.27 7.50 -51.93 -0.39 0.88 16 31 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 32 H 0.10 1.90 5.86 -51.93 -0.30 1.59 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 280.52 15.07 4.23 4.23 Total: -1.00 -28.35 280.52 -5.88 -34.23 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.99 Total: 3.97 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.45 Total: 0.56 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.17 Total: -32.68 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.19 Total: -23.76 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.35 -5.88 -34.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345413052.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.456 kcal (2) G-P(sol) polarization free energy of solvation -28.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds