Wall clock time and date at job start Sun Mar 29 2020 22:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29404 * 125.58194 * 2 1 4 4 N 1.40177 * 108.13718 * 179.97438 * 3 2 1 5 5 C 1.46496 * 126.34683 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47319 * 300.02437 * 5 4 3 7 7 C 1.53005 * 109.47342 * 60.02711 * 5 4 3 8 8 C 1.34935 * 107.29925 * 359.97438 * 4 3 2 9 9 O 1.21816 * 126.30345 * 179.97438 * 8 4 3 10 10 N 1.34819 * 107.40035 * 0.02562 * 8 4 3 11 11 C 1.46492 * 125.83625 * 179.97438 * 10 8 4 12 12 C 1.53006 * 109.47292 * 270.03933 * 11 10 8 13 13 C 1.50695 * 109.47447 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99791 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00527 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99503 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00557 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46766 * 60.00226 * 17 15 13 19 19 H 1.48499 * 109.47281 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47029 * 300.00503 * 17 15 13 21 21 H 1.09006 * 109.47365 * 0.03096 * 1 2 3 22 22 H 1.08998 * 109.47107 * 120.02275 * 1 2 3 23 23 H 1.08998 * 109.47712 * 240.02298 * 1 2 3 24 24 H 1.09004 * 109.46721 * 180.02562 * 5 4 3 25 25 H 1.08995 * 109.47052 * 180.02562 * 6 5 4 26 26 H 1.08996 * 109.46795 * 300.00427 * 6 5 4 27 27 H 1.08994 * 109.46944 * 59.99813 * 6 5 4 28 28 H 1.08994 * 109.46761 * 59.99446 * 7 5 4 29 29 H 1.08995 * 109.47006 * 180.02562 * 7 5 4 30 30 H 1.09004 * 109.46730 * 300.00047 * 7 5 4 31 31 H 1.09002 * 109.47488 * 30.04202 * 11 10 8 32 32 H 1.09004 * 109.47382 * 150.04250 * 11 10 8 33 33 H 1.09002 * 109.47074 * 300.00523 * 12 11 10 34 34 H 1.09004 * 109.46648 * 59.99868 * 12 11 10 35 35 H 0.96996 * 119.99892 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2599 1.0524 0.0000 4 7 3.5972 0.6322 0.0006 5 6 4.7793 1.4976 0.0003 6 6 4.7647 2.3804 -1.2493 7 6 4.7648 2.3812 1.2493 8 6 3.5938 -0.7172 0.0015 9 8 4.5737 -1.4409 0.0018 10 7 2.3063 -1.1171 0.0009 11 6 1.8395 -2.5056 0.0010 12 6 1.6787 -2.9898 -1.4415 13 6 1.1991 -4.4184 -1.4414 14 1 1.0258 -4.9298 -0.5060 15 6 0.9804 -5.0723 -2.6353 16 7 1.1909 -4.4494 -3.7744 17 14 0.3852 -6.8430 -2.6353 18 1 -0.9224 -6.9255 -1.9363 19 1 0.2293 -7.3129 -4.0353 20 1 1.3762 -7.6982 -1.9340 21 1 -0.3634 1.0277 -0.0006 22 1 -0.3633 -0.5142 -0.8898 23 1 -0.3634 -0.5134 0.8901 24 1 5.6795 0.8829 0.0004 25 1 5.6444 3.0239 -1.2497 26 1 4.7750 1.7509 -2.1390 27 1 3.8645 2.9949 -1.2495 28 1 4.7752 1.7523 2.1394 29 1 5.6441 3.0254 1.2487 30 1 3.8645 2.9958 1.2491 31 1 2.5666 -3.1334 0.5161 32 1 0.8794 -2.5662 0.5137 33 1 0.9515 -2.3620 -1.9565 34 1 2.6387 -2.9292 -1.9541 35 1 1.0375 -4.9095 -4.6143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351784323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:48 Heat of formation + Delta-G solvation = 21.688178 kcal Electronic energy + Delta-G solvation = -17342.658665 eV Core-core repulsion = 14570.263445 eV Total energy + Delta-G solvation = -2772.395221 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.95085 -36.83930 -36.39529 -34.11589 -32.49793 -31.30833 -29.46947 -27.69342 -27.24792 -25.15099 -22.52131 -21.64397 -20.38394 -20.02018 -16.98639 -16.51446 -16.02054 -15.34542 -15.11272 -14.52761 -14.13963 -13.81734 -13.58985 -13.18691 -12.95879 -12.49084 -12.46005 -12.28356 -12.26406 -11.80249 -11.61227 -11.49582 -11.16804 -10.99914 -10.92830 -10.78912 -10.20820 -10.15102 -9.67820 -9.33648 -9.14065 -8.44924 -7.96115 -6.09480 -4.14574 2.26507 2.32453 3.23202 3.29227 3.34226 3.36147 3.52690 4.38925 4.59393 4.90928 5.01688 5.17030 5.21152 5.26811 5.52132 5.52997 5.55851 5.64087 5.74768 5.78204 5.90894 6.02135 6.17490 6.19784 6.23706 6.46307 6.54702 6.68081 7.06487 7.50085 7.60749 7.87080 8.15102 8.21785 8.59307 8.90968 9.50289 11.01837 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.037871 B = 0.005657 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.166634 B = 4948.585249 C = 5171.550864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.282 3.718 3 N -0.300 5.300 4 N -0.454 5.454 5 C 0.181 3.819 6 C -0.160 4.160 7 C -0.158 4.158 8 C 0.643 3.357 9 O -0.561 6.561 10 N -0.543 5.543 11 C 0.127 3.873 12 C 0.013 3.987 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 H 0.092 0.908 22 H 0.097 0.903 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.021 0.979 34 H 0.023 0.977 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 13.008 7.994 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.004 3.996 3 N -0.125 5.125 4 N -0.276 5.276 5 C 0.080 3.920 6 C -0.218 4.218 7 C -0.216 4.216 8 C 0.343 3.657 9 O -0.435 6.435 10 N -0.270 5.270 11 C 0.007 3.993 12 C -0.025 4.025 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 H 0.111 0.889 22 H 0.115 0.885 23 H 0.107 0.893 24 H 0.120 0.880 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.386 13.487 7.804 15.643 hybrid contribution -0.241 -1.796 -0.215 1.825 sum 1.145 11.691 7.589 13.985 Atomic orbital electron populations 1.20412 0.83433 1.04829 1.04860 1.24119 0.96460 0.82505 0.96491 1.76818 0.87677 1.21114 1.26917 1.49081 1.03979 1.04859 1.69686 1.20958 0.83962 0.90890 0.96223 1.22126 1.02774 0.99806 0.97054 1.22117 1.02840 0.99734 0.96875 1.16838 0.84125 0.83118 0.81667 1.91036 1.35168 1.58054 1.59257 1.46472 1.06014 1.09140 1.65373 1.22165 0.99313 0.74829 1.02958 1.19428 0.98070 0.96406 0.88628 1.20955 1.45830 0.96958 0.92706 0.92261 1.24997 0.95285 0.98349 0.95473 1.69966 1.48289 1.37237 0.97407 0.86567 0.79305 0.84535 0.77076 1.20069 1.21218 1.20096 0.88940 0.88467 0.89340 0.87989 0.91114 0.92145 0.91336 0.92434 0.91100 0.91353 0.89938 0.90016 0.96031 0.95848 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.85 36.00 0.35 -0.54 16 2 C 0.28 4.65 7.98 -154.16 -1.23 3.42 16 3 N -0.30 -5.01 12.40 32.97 0.41 -4.60 16 4 N -0.45 -8.07 3.28 -58.57 -0.19 -8.26 16 5 C 0.18 2.52 3.71 -67.93 -0.25 2.27 16 6 C -0.16 -1.91 9.46 37.16 0.35 -1.56 16 7 C -0.16 -1.74 9.46 37.16 0.35 -1.39 16 8 C 0.64 13.71 8.60 -86.74 -0.75 12.97 16 9 O -0.56 -13.75 17.48 5.09 0.09 -13.67 16 10 N -0.54 -10.71 2.74 -118.00 -0.32 -11.03 16 11 C 0.13 2.63 5.76 -4.04 -0.02 2.60 16 12 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 13 C -0.53 -14.38 9.11 -34.44 -0.31 -14.69 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 17 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.10 1.46 7.78 -51.93 -0.40 1.06 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.77 8.08 -51.93 -0.42 1.35 16 32 H 0.08 1.43 7.79 -51.93 -0.40 1.03 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 303.99 15.07 4.58 4.58 Total: -1.00 -33.55 303.99 -6.89 -40.44 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.42 Total: -2.74 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -1.75 Total: 4.88 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.63 Total: -49.65 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.55 -6.89 -40.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351784323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.132 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds