Wall clock time and date at job start Sun Mar 29 2020 22:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29404 * 125.58194 * 2 1 4 4 N 1.40177 * 108.13718 * 179.97438 * 3 2 1 5 5 C 1.46496 * 126.34683 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47319 * 300.02437 * 5 4 3 7 7 C 1.53005 * 109.47342 * 60.02711 * 5 4 3 8 8 C 1.34935 * 107.29925 * 359.97438 * 4 3 2 9 9 O 1.21816 * 126.30345 * 179.97438 * 8 4 3 10 10 N 1.34819 * 107.40035 * 0.02562 * 8 4 3 11 11 C 1.46492 * 125.83625 * 179.97438 * 10 8 4 12 12 C 1.53006 * 109.47292 * 270.03933 * 11 10 8 13 13 C 1.50695 * 109.47447 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99791 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00527 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99503 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00557 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46766 * 60.00226 * 17 15 13 19 19 H 1.48499 * 109.47281 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47029 * 300.00503 * 17 15 13 21 21 H 1.09006 * 109.47365 * 0.03096 * 1 2 3 22 22 H 1.08998 * 109.47107 * 120.02275 * 1 2 3 23 23 H 1.08998 * 109.47712 * 240.02298 * 1 2 3 24 24 H 1.09004 * 109.46721 * 180.02562 * 5 4 3 25 25 H 1.08995 * 109.47052 * 180.02562 * 6 5 4 26 26 H 1.08996 * 109.46795 * 300.00427 * 6 5 4 27 27 H 1.08994 * 109.46944 * 59.99813 * 6 5 4 28 28 H 1.08994 * 109.46761 * 59.99446 * 7 5 4 29 29 H 1.08995 * 109.47006 * 180.02562 * 7 5 4 30 30 H 1.09004 * 109.46730 * 300.00047 * 7 5 4 31 31 H 1.09002 * 109.47488 * 30.04202 * 11 10 8 32 32 H 1.09004 * 109.47382 * 150.04250 * 11 10 8 33 33 H 1.09002 * 109.47074 * 300.00523 * 12 11 10 34 34 H 1.09004 * 109.46648 * 59.99868 * 12 11 10 35 35 H 0.96996 * 119.99892 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2599 1.0524 0.0000 4 7 3.5972 0.6322 0.0006 5 6 4.7793 1.4976 0.0003 6 6 4.7647 2.3804 -1.2493 7 6 4.7648 2.3812 1.2493 8 6 3.5938 -0.7172 0.0015 9 8 4.5737 -1.4409 0.0018 10 7 2.3063 -1.1171 0.0009 11 6 1.8395 -2.5056 0.0010 12 6 1.6787 -2.9898 -1.4415 13 6 1.1991 -4.4184 -1.4414 14 1 1.0258 -4.9298 -0.5060 15 6 0.9804 -5.0723 -2.6353 16 7 1.1909 -4.4494 -3.7744 17 14 0.3852 -6.8430 -2.6353 18 1 -0.9224 -6.9255 -1.9363 19 1 0.2293 -7.3129 -4.0353 20 1 1.3762 -7.6982 -1.9340 21 1 -0.3634 1.0277 -0.0006 22 1 -0.3633 -0.5142 -0.8898 23 1 -0.3634 -0.5134 0.8901 24 1 5.6795 0.8829 0.0004 25 1 5.6444 3.0239 -1.2497 26 1 4.7750 1.7509 -2.1390 27 1 3.8645 2.9949 -1.2495 28 1 4.7752 1.7523 2.1394 29 1 5.6441 3.0254 1.2487 30 1 3.8645 2.9958 1.2491 31 1 2.5666 -3.1334 0.5161 32 1 0.8794 -2.5662 0.5137 33 1 0.9515 -2.3620 -1.9565 34 1 2.6387 -2.9292 -1.9541 35 1 1.0375 -4.9095 -4.6143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351784323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:48 Heat of formation + Delta-G solvation = 0.988761 kcal Electronic energy + Delta-G solvation = -17343.556260 eV Core-core repulsion = 14570.263445 eV Total energy + Delta-G solvation = -2773.292815 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.42853 -38.46688 -37.75828 -35.84242 -34.30016 -32.53574 -31.32877 -28.87984 -28.18509 -27.07627 -24.12043 -23.25403 -21.77408 -21.49913 -18.82144 -18.00359 -17.64808 -16.95880 -16.65485 -16.47303 -15.32479 -15.10439 -14.77300 -14.67594 -14.44488 -14.28501 -13.68692 -13.48201 -13.22927 -13.19787 -12.99024 -12.84735 -12.76242 -12.61889 -12.34403 -12.10084 -12.04761 -11.96132 -11.43622 -11.29582 -10.74670 -10.59938 -9.47465 -8.23935 -6.37358 0.84700 0.99016 1.42930 1.46545 1.53989 1.60581 2.17281 2.41931 3.10945 3.36092 3.77309 3.94102 3.99365 4.11632 4.15645 4.42791 4.55294 4.67548 4.69931 4.73188 4.76324 4.82047 4.85985 4.92475 4.99252 5.17455 5.23081 5.34431 5.39635 5.48137 5.68907 5.79642 6.09623 6.70242 6.77485 6.99782 7.33320 8.88452 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.037871 B = 0.005657 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.166634 B = 4948.585249 C = 5171.550864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.280 3.720 3 N -0.296 5.296 4 N -0.448 5.448 5 C 0.164 3.836 6 C -0.151 4.151 7 C -0.145 4.145 8 C 0.621 3.379 9 O -0.608 6.608 10 N -0.551 5.551 11 C 0.143 3.857 12 C 0.024 3.976 13 C -0.542 4.542 14 H 0.075 0.925 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.972 3.028 18 H -0.255 1.255 19 H -0.287 1.287 20 H -0.271 1.271 21 H 0.121 0.879 22 H 0.090 0.910 23 H 0.115 0.885 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.009 0.991 34 H -0.030 1.030 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.846 13.701 9.305 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.003 3.997 3 N -0.121 5.121 4 N -0.269 5.269 5 C 0.064 3.936 6 C -0.208 4.208 7 C -0.203 4.203 8 C 0.320 3.680 9 O -0.486 6.486 10 N -0.277 5.277 11 C 0.022 3.978 12 C -0.014 4.014 13 C -0.580 4.580 14 H 0.093 0.907 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.796 3.204 18 H -0.180 1.180 19 H -0.212 1.212 20 H -0.196 1.196 21 H 0.139 0.861 22 H 0.109 0.891 23 H 0.133 0.867 24 H 0.109 0.891 25 H 0.125 0.875 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.140 0.860 33 H 0.028 0.972 34 H -0.012 1.012 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.070 14.244 9.136 16.922 hybrid contribution 0.235 -1.917 -0.644 2.036 sum 0.166 12.327 8.492 14.970 Atomic orbital electron populations 1.20683 0.79832 1.07074 1.05686 1.25109 0.98228 0.81054 0.95351 1.76837 0.87075 1.21024 1.27130 1.49464 1.05331 1.03910 1.68214 1.21434 0.82354 0.90997 0.98856 1.22083 1.04563 0.99348 0.94836 1.22047 1.04516 0.99214 0.94535 1.17224 0.84220 0.84296 0.82278 1.90973 1.36693 1.59420 1.61534 1.46463 1.06200 1.09622 1.65383 1.21866 1.00921 0.75373 0.99651 1.19221 0.94633 0.96360 0.91213 1.21430 1.45291 0.97803 0.93463 0.90670 1.26013 0.95322 1.03260 0.94997 1.70120 1.49669 1.39386 0.98192 0.85396 0.79474 0.78406 0.77142 1.17967 1.21246 1.19618 0.86073 0.89112 0.86708 0.89066 0.87498 0.94505 0.91206 0.93470 0.87707 0.91197 0.91162 0.85953 0.97249 1.01204 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 9.85 71.24 0.70 -0.83 16 2 C 0.28 8.86 7.98 137.69 1.10 9.96 16 3 N -0.30 -9.57 12.40 -49.60 -0.61 -10.19 16 4 N -0.45 -16.01 3.28 -457.29 -1.50 -17.51 16 5 C 0.16 4.49 3.71 45.00 0.17 4.65 16 6 C -0.15 -3.43 9.46 71.98 0.68 -2.75 16 7 C -0.15 -2.94 9.46 71.98 0.68 -2.25 16 8 C 0.62 27.33 8.60 178.99 1.54 28.87 16 9 O -0.61 -31.40 17.48 -4.72 -0.08 -31.48 16 10 N -0.55 -21.86 2.74 -645.38 -1.77 -23.63 16 11 C 0.14 5.88 5.76 86.38 0.50 6.38 16 12 C 0.02 1.25 5.30 29.85 0.16 1.41 16 13 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 14 H 0.08 3.80 7.74 -2.91 -0.02 3.77 16 15 C 0.00 0.14 5.46 84.65 0.46 0.60 16 16 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 17 Si 0.97 43.12 29.54 68.60 2.03 45.14 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 19 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 22 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.09 2.68 7.78 -2.38 -0.02 2.66 16 25 H 0.11 1.65 8.14 -2.39 -0.02 1.64 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.07 3.07 8.08 -2.39 -0.02 3.05 16 32 H 0.12 4.03 7.79 -2.38 -0.02 4.01 16 33 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 34 H -0.03 -1.92 8.14 -2.38 -0.02 -1.94 16 35 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -75.90 303.99 5.62 -70.27 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.06 Total: 7.33 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 6.22 Total: 16.56 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -3.60 Total: -107.82 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.08 Total: -31.48 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -75.90 5.62 -70.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351784323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.263 kcal (2) G-P(sol) polarization free energy of solvation -75.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds