Wall clock time and date at job start Sun Mar 29 2020 21:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.00421 * 2 1 4 4 C 1.51448 * 109.98511 * 121.28881 * 2 1 3 5 5 O 1.20766 * 126.34210 * 299.68570 * 4 2 1 6 6 C 1.51841 * 107.31875 * 119.70274 * 4 2 1 7 7 C 1.54893 * 104.43221 * 336.21077 * 6 4 2 8 8 C 1.54282 * 109.98514 * 238.70248 * 2 1 3 9 9 H 1.08998 * 110.69372 * 145.14454 * 8 2 1 10 10 C 1.53001 * 110.56424 * 22.34599 * 8 2 1 11 11 C 1.50705 * 109.46648 * 179.21316 * 10 8 2 12 12 O 1.21282 * 119.99974 * 0.02562 * 11 10 8 13 13 N 1.34774 * 119.99928 * 179.97438 * 11 10 8 14 14 C 1.46495 * 120.00320 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47395 * 179.97438 * 14 13 11 16 16 H 1.07994 * 119.99603 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99838 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00380 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99848 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 239.99776 * 19 17 15 22 22 H 1.48500 * 109.47454 * 119.99769 * 19 17 15 23 23 H 1.09000 * 109.47283 * 181.29870 * 1 2 3 24 24 H 1.09002 * 109.46901 * 301.29636 * 1 2 3 25 25 H 1.08993 * 109.46704 * 61.29136 * 1 2 3 26 26 H 1.08999 * 110.44479 * 217.47450 * 6 4 2 27 27 H 1.08997 * 110.54722 * 95.00393 * 6 4 2 28 28 H 1.08995 * 110.83309 * 279.41084 * 7 6 4 29 29 H 1.09002 * 110.99946 * 155.91145 * 7 6 4 30 30 H 1.08999 * 109.47147 * 59.21517 * 10 8 2 31 31 H 1.08998 * 109.47134 * 299.21114 * 10 8 2 32 32 H 0.97006 * 119.99735 * 359.97438 * 13 11 10 33 33 H 1.09005 * 109.47411 * 59.99731 * 14 13 11 34 34 H 1.08998 * 109.46900 * 299.99810 * 14 13 11 35 35 H 0.97001 * 119.99667 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0476 -0.7392 1.2163 5 8 1.8395 -0.4518 2.3706 6 6 2.8771 -1.9083 0.7156 7 6 2.3365 -2.1828 -0.7097 8 6 2.0573 -0.7532 -1.2389 9 1 2.9753 -0.2947 -1.6066 10 6 0.9958 -0.7854 -2.3404 11 6 1.5428 -1.5089 -3.5440 12 8 2.6703 -1.9551 -3.5226 13 7 0.7786 -1.6608 -4.6437 14 6 1.3100 -2.3645 -5.8135 15 6 0.2641 -2.3973 -6.8980 16 1 -0.7001 -1.9401 -6.7322 17 6 0.5380 -3.0120 -8.1014 18 7 1.7120 -3.5692 -8.3031 19 14 -0.7581 -3.0520 -9.4460 20 1 -1.9838 -2.3597 -8.9728 21 1 -1.0837 -4.4623 -9.7779 22 1 -0.2376 -2.3662 -10.6559 23 1 -0.3634 -1.0274 0.0233 24 1 -0.3633 0.5339 0.8782 25 1 -0.3632 0.4936 -0.9013 26 1 2.7300 -2.7802 1.3530 27 1 3.9328 -1.6397 0.6772 28 1 1.4177 -2.7678 -0.6698 29 1 3.0864 -2.6833 -1.3223 30 1 0.7303 0.2343 -2.6190 31 1 0.1097 -1.3050 -1.9759 32 1 -0.1236 -1.3049 -4.6603 33 1 1.5757 -3.3842 -5.5345 34 1 2.1961 -1.8451 -6.1783 35 1 2.3852 -3.5481 -7.6050 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357101661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:24 Heat of formation + Delta-G solvation = -126.850101 kcal Electronic energy + Delta-G solvation = -16891.171152 eV Core-core repulsion = 14080.042077 eV Total energy + Delta-G solvation = -2811.129075 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41304 -40.29646 -37.83674 -36.32309 -34.42277 -32.65540 -31.33772 -28.76925 -26.19970 -25.86243 -24.56676 -21.90339 -20.95166 -19.76467 -19.24912 -18.06119 -17.25654 -16.84777 -16.41179 -16.21331 -15.83068 -15.59367 -15.00674 -14.65950 -14.52088 -14.23524 -14.01477 -13.69904 -13.48973 -13.07532 -13.03718 -12.87320 -12.57277 -12.32099 -11.91018 -11.86446 -11.64938 -11.41634 -10.96090 -10.75608 -10.68421 -10.38469 -9.88650 -8.78335 -6.53706 0.87656 1.56785 1.66026 1.78727 1.81625 2.43906 2.60749 3.09656 3.09978 3.46264 3.65757 3.80311 4.08414 4.16638 4.24697 4.32748 4.48912 4.56871 4.60084 4.76598 4.82308 4.87446 4.91293 4.99284 5.02857 5.07990 5.21523 5.33028 5.38853 5.52447 5.58256 6.11366 6.33944 6.44665 6.87855 7.27247 7.49090 8.61252 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.058221 B = 0.004290 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.809473 B = 6524.903005 C = 6844.370718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 H 0.117 0.883 4 C 0.379 3.621 5 O -0.483 6.483 6 C -0.179 4.179 7 C -0.113 4.113 8 C -0.064 4.064 9 H 0.081 0.919 10 C -0.121 4.121 11 C 0.492 3.508 12 O -0.596 6.596 13 N -0.709 5.709 14 C 0.252 3.748 15 C -0.628 4.628 16 H 0.076 0.924 17 C -0.033 4.033 18 N -0.932 5.932 19 Si 1.133 2.867 20 H -0.259 1.259 21 H -0.281 1.281 22 H -0.280 1.280 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.409 0.591 33 H -0.018 1.018 34 H -0.018 1.018 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 7.642 15.219 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 H 0.135 0.865 4 C 0.257 3.743 5 O -0.358 6.358 6 C -0.216 4.216 7 C -0.151 4.151 8 C -0.083 4.083 9 H 0.099 0.901 10 C -0.161 4.161 11 C 0.280 3.720 12 O -0.478 6.478 13 N -0.359 5.359 14 C 0.128 3.872 15 C -0.666 4.666 16 H 0.094 0.906 17 C -0.232 4.232 18 N -0.568 5.568 19 Si 0.953 3.047 20 H -0.183 1.183 21 H -0.207 1.207 22 H -0.206 1.206 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.132 0.868 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.245 0.755 33 H 0.000 1.000 34 H 0.000 1.000 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.462 6.961 14.315 16.531 hybrid contribution 0.666 0.284 1.311 1.498 sum -3.797 7.245 15.626 17.637 Atomic orbital electron populations 1.21836 0.91336 1.03023 1.03879 1.22261 0.99090 1.01484 0.93078 0.86470 1.25282 0.75738 0.84576 0.88749 1.90393 1.53600 1.68696 1.23117 1.22925 1.01864 0.98903 0.97938 1.22466 1.01734 0.96891 0.94017 1.21608 0.98128 0.96033 0.92575 0.90098 1.21881 1.00387 1.02816 0.90980 1.21698 0.85378 0.79765 0.85118 1.90623 1.21338 1.52130 1.83676 1.46112 1.18242 1.57094 1.14410 1.18635 0.94295 0.89939 0.84306 1.22505 1.01630 1.41432 1.01040 0.90603 1.27602 1.01254 0.91886 1.02430 1.70854 1.05930 1.43324 1.36725 0.82746 0.72403 0.77258 0.72298 1.18315 1.20651 1.20630 0.91948 0.92139 0.88989 0.88432 0.86771 0.90828 0.91477 0.85886 0.86206 0.75538 1.00010 1.00025 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.95 71.98 0.57 -1.39 16 2 C -0.14 -2.30 3.36 -10.87 -0.04 -2.34 16 3 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 4 C 0.38 7.79 7.18 29.70 0.21 8.00 16 5 O -0.48 -13.00 17.99 -1.47 -0.03 -13.02 16 6 C -0.18 -3.33 6.72 30.86 0.21 -3.13 16 7 C -0.11 -2.52 5.66 31.92 0.18 -2.34 16 8 C -0.06 -1.32 2.42 -9.68 -0.02 -1.34 16 9 H 0.08 1.86 8.03 -2.39 -0.02 1.84 16 10 C -0.12 -2.56 3.90 29.85 0.12 -2.44 16 11 C 0.49 17.43 7.62 87.66 0.67 18.10 16 12 O -0.60 -26.35 14.54 -3.04 -0.04 -26.40 16 13 N -0.71 -28.00 5.55 -466.79 -2.59 -30.59 16 14 C 0.25 13.32 4.74 85.63 0.41 13.72 16 15 C -0.63 -33.78 9.28 25.60 0.24 -33.55 16 16 H 0.08 3.73 7.60 -2.91 -0.02 3.71 16 17 C -0.03 -1.85 5.46 84.65 0.46 -1.39 16 18 N -0.93 -57.19 13.65 21.45 0.29 -56.89 16 19 Si 1.13 47.34 29.90 68.60 2.05 49.39 16 20 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 21 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 23 H 0.06 0.85 7.63 -2.39 -0.02 0.84 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.09 0.93 6.63 -2.39 -0.02 0.92 16 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.55 8.02 -2.39 -0.02 1.53 16 29 H 0.07 1.89 7.11 -2.39 -0.02 1.88 16 30 H 0.12 1.92 7.59 -2.39 -0.02 1.91 16 31 H 0.12 1.99 6.66 -2.39 -0.02 1.98 16 32 H 0.41 13.29 8.32 -92.70 -0.77 12.52 16 33 H -0.02 -1.06 8.01 -2.38 -0.02 -1.08 16 34 H -0.02 -1.07 8.01 -2.39 -0.02 -1.09 16 35 H 0.25 16.18 7.22 -92.71 -0.67 15.51 16 Total: -1.00 -72.58 290.62 3.10 -69.48 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.42 Total: 16.13 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 3.00 Total: -8.10 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -2.30 Total: -87.49 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.07 Total: -39.42 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.05 Total: 49.39 kcal Total: -72.58 3.10 -69.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357101661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.370 kcal (2) G-P(sol) polarization free energy of solvation -72.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds