Wall clock time and date at job start Sun Mar 29 2020 21:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.97066 * 2 1 4 4 C 1.51450 * 110.01758 * 238.71158 * 2 1 3 5 5 O 1.20763 * 126.34005 * 60.24771 * 4 2 1 6 6 C 1.51837 * 107.31896 * 240.27848 * 4 2 1 7 7 C 1.54895 * 104.43372 * 23.78411 * 6 4 2 8 8 C 1.54270 * 109.98449 * 121.27318 * 2 1 3 9 9 H 1.08998 * 110.57206 * 214.97620 * 8 2 1 10 10 C 1.52996 * 110.57267 * 337.70143 * 8 2 1 11 11 C 1.50702 * 109.47589 * 184.99911 * 10 8 2 12 12 O 1.21282 * 119.99684 * 359.97438 * 11 10 8 13 13 N 1.34769 * 120.00466 * 179.97438 * 11 10 8 14 14 C 1.46500 * 120.00241 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46949 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00167 * 359.72205 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 89.99430 * 19 17 15 21 21 H 1.48494 * 109.47031 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.46680 * 329.99678 * 19 17 15 23 23 H 1.08996 * 109.46678 * 298.72714 * 1 2 3 24 24 H 1.08998 * 109.46951 * 58.72657 * 1 2 3 25 25 H 1.09000 * 109.47186 * 178.72760 * 1 2 3 26 26 H 1.08998 * 110.44712 * 142.52167 * 6 4 2 27 27 H 1.09004 * 110.43913 * 264.92931 * 6 4 2 28 28 H 1.08996 * 110.83591 * 204.16570 * 7 6 4 29 29 H 1.09005 * 110.82788 * 80.59083 * 7 6 4 30 30 H 1.09004 * 109.47694 * 64.99648 * 10 8 2 31 31 H 1.09004 * 109.46785 * 304.99747 * 10 8 2 32 32 H 0.97010 * 119.99849 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.47175 * 60.00333 * 14 13 11 34 34 H 1.09001 * 109.47297 * 299.99840 * 14 13 11 35 35 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9024 1.0245 0.0000 4 6 2.0485 -0.7390 -1.2160 5 8 1.8399 -0.4523 -2.3705 6 6 2.8785 -1.9076 -0.7150 7 6 2.3376 -2.1822 0.7103 8 6 2.0573 -0.7526 1.2392 9 1 2.9740 -0.2911 1.6062 10 6 0.9956 -0.7855 2.3403 11 6 1.5764 -1.4162 3.5796 12 8 2.7262 -1.8019 3.5818 13 7 0.8181 -1.5516 4.6855 14 6 1.3826 -2.1653 5.8901 15 6 0.3368 -2.1975 6.9747 16 1 -0.6483 -1.7966 6.7871 17 6 0.6392 -2.7342 8.2082 18 7 -0.2733 -2.7619 9.1548 19 14 2.3454 -3.4207 8.5353 20 1 3.2190 -2.3436 9.0663 21 1 2.2545 -4.5197 9.5297 22 1 2.9192 -3.9445 7.2697 23 1 -0.3632 0.4939 0.9012 24 1 -0.3633 0.5335 -0.8783 25 1 -0.3633 -1.0274 -0.0228 26 1 2.7320 -2.7796 -1.3523 27 1 3.9337 -1.6369 -0.6781 28 1 3.0901 -2.6810 1.3210 29 1 1.4191 -2.7678 0.6701 30 1 0.1395 -1.3697 2.0024 31 1 0.6750 0.2315 2.5663 32 1 -0.1017 -1.2435 4.6837 33 1 2.2390 -1.5817 6.2279 34 1 1.7025 -3.1825 5.6640 35 1 -0.0604 -3.1391 10.0228 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357101668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:26 Heat of formation + Delta-G solvation = -97.238028 kcal Electronic energy + Delta-G solvation = -16893.539112 eV Core-core repulsion = 14083.694113 eV Total energy + Delta-G solvation = -2809.844999 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40192 -38.93054 -36.79098 -34.30077 -32.42331 -31.79324 -30.37039 -27.90270 -25.28957 -24.91256 -22.16301 -20.61018 -19.72126 -18.80143 -17.47337 -16.61919 -16.02030 -15.58183 -15.16585 -15.10485 -14.78396 -14.18325 -13.65627 -13.44158 -13.30109 -12.79846 -12.71758 -12.52165 -12.23562 -12.13460 -11.84441 -11.45690 -11.17054 -10.94392 -10.81566 -10.70440 -10.55887 -9.99918 -9.55660 -9.51616 -9.16991 -8.80475 -8.17224 -6.24213 -4.26629 1.75250 3.20687 3.25074 3.31229 3.38959 3.87769 3.94878 4.30581 4.35171 4.58675 4.70923 4.95560 5.06800 5.11070 5.15622 5.20664 5.31956 5.44439 5.50173 5.56287 5.71338 5.73559 5.80609 5.90238 5.95774 6.20599 6.27557 6.78307 7.04337 7.20009 7.31544 7.37144 8.10785 8.49475 8.72514 8.91419 9.36018 10.87783 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.053667 B = 0.004594 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.608323 B = 6093.660834 C = 6465.411058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 H 0.102 0.898 4 C 0.375 3.625 5 O -0.451 6.451 6 C -0.184 4.184 7 C -0.112 4.112 8 C -0.067 4.067 9 H 0.092 0.908 10 C -0.136 4.136 11 C 0.498 3.502 12 O -0.558 6.558 13 N -0.707 5.707 14 C 0.220 3.780 15 C -0.545 4.545 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.892 5.892 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.261 1.261 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.396 0.604 33 H 0.020 0.980 34 H 0.025 0.975 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.522 4.068 -16.640 17.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 H 0.120 0.880 4 C 0.250 3.750 5 O -0.324 6.324 6 C -0.222 4.222 7 C -0.150 4.150 8 C -0.086 4.086 9 H 0.111 0.889 10 C -0.176 4.176 11 C 0.283 3.717 12 O -0.438 6.438 13 N -0.355 5.355 14 C 0.098 3.902 15 C -0.583 4.583 16 H 0.097 0.903 17 C -0.126 4.126 18 N -0.530 5.530 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.185 1.185 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.230 0.770 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.182 3.875 -17.021 17.744 hybrid contribution 0.342 -0.207 0.531 0.665 sum 3.524 3.667 -16.490 17.256 Atomic orbital electron populations 1.21780 0.92517 1.02657 1.02912 1.22354 0.98251 1.01334 0.95174 0.88046 1.25075 0.76464 0.84553 0.88900 1.90395 1.52357 1.67761 1.21902 1.22947 1.01459 0.98811 0.98948 1.22528 1.02167 0.96708 0.93571 1.21664 0.98697 0.96096 0.92108 0.88918 1.21827 0.99595 1.02490 0.93669 1.20567 0.86557 0.79741 0.84805 1.90630 1.17991 1.50953 1.84232 1.46218 1.15584 1.60683 1.13051 1.19477 0.95123 0.93227 0.82401 1.21107 0.99200 1.42060 0.95886 0.90279 1.24806 0.97351 0.94856 0.95632 1.69884 1.33901 1.44914 1.04268 0.86809 0.84506 0.79377 0.78931 1.19864 1.20905 1.18527 0.90791 0.92207 0.92047 0.89206 0.87784 0.88961 0.91101 0.88804 0.88886 0.77032 0.96235 0.95758 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.00 37.16 0.30 -0.89 16 2 C -0.15 -1.41 3.36 -90.74 -0.30 -1.71 16 3 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 4 C 0.37 4.05 7.18 -28.11 -0.20 3.85 16 5 O -0.45 -6.26 17.99 6.00 0.11 -6.15 16 6 C -0.18 -1.73 6.72 -26.32 -0.18 -1.90 16 7 C -0.11 -1.20 5.80 -24.68 -0.14 -1.35 16 8 C -0.07 -0.71 2.39 -88.91 -0.21 -0.92 16 9 H 0.09 1.08 7.89 -51.93 -0.41 0.67 16 10 C -0.14 -1.55 3.87 -27.88 -0.11 -1.65 16 11 C 0.50 8.51 7.65 -10.99 -0.08 8.43 16 12 O -0.56 -11.43 14.79 5.56 0.08 -11.35 16 13 N -0.71 -13.46 5.55 -61.47 -0.34 -13.80 16 14 C 0.22 5.25 4.50 -5.19 -0.02 5.22 16 15 C -0.54 -14.65 9.83 -34.44 -0.34 -14.99 16 16 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 17 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 18 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 19 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 23 H 0.07 0.53 6.53 -51.93 -0.34 0.20 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 1.17 7.37 -51.93 -0.38 0.78 16 29 H 0.07 0.73 7.96 -51.93 -0.41 0.31 16 30 H 0.09 0.92 6.85 -51.93 -0.36 0.56 16 31 H 0.09 0.89 7.35 -51.93 -0.38 0.51 16 32 H 0.40 6.60 8.32 -40.82 -0.34 6.26 16 33 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 34 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 288.71 15.07 4.35 4.35 Total: -1.00 -31.99 288.71 -6.15 -38.14 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.06 Total: 1.65 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -1.39 Total: -3.86 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.43 Total: -39.22 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.19 Total: -17.50 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.99 -6.15 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357101668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.101 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds