Wall clock time and date at job start Sun Mar 29 2020 21:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.97066 * 2 1 4 4 C 1.51450 * 110.01758 * 238.71158 * 2 1 3 5 5 O 1.20763 * 126.34005 * 60.24771 * 4 2 1 6 6 C 1.51837 * 107.31896 * 240.27848 * 4 2 1 7 7 C 1.54895 * 104.43372 * 23.78411 * 6 4 2 8 8 C 1.54270 * 109.98449 * 121.27318 * 2 1 3 9 9 H 1.08998 * 110.57206 * 214.97620 * 8 2 1 10 10 C 1.52996 * 110.57267 * 337.70143 * 8 2 1 11 11 C 1.50702 * 109.47589 * 184.99911 * 10 8 2 12 12 O 1.21282 * 119.99684 * 359.97438 * 11 10 8 13 13 N 1.34769 * 120.00466 * 179.97438 * 11 10 8 14 14 C 1.46500 * 120.00241 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46949 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00167 * 359.72205 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 89.99430 * 19 17 15 21 21 H 1.48494 * 109.47031 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.46680 * 329.99678 * 19 17 15 23 23 H 1.08996 * 109.46678 * 298.72714 * 1 2 3 24 24 H 1.08998 * 109.46951 * 58.72657 * 1 2 3 25 25 H 1.09000 * 109.47186 * 178.72760 * 1 2 3 26 26 H 1.08998 * 110.44712 * 142.52167 * 6 4 2 27 27 H 1.09004 * 110.43913 * 264.92931 * 6 4 2 28 28 H 1.08996 * 110.83591 * 204.16570 * 7 6 4 29 29 H 1.09005 * 110.82788 * 80.59083 * 7 6 4 30 30 H 1.09004 * 109.47694 * 64.99648 * 10 8 2 31 31 H 1.09004 * 109.46785 * 304.99747 * 10 8 2 32 32 H 0.97010 * 119.99849 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.47175 * 60.00333 * 14 13 11 34 34 H 1.09001 * 109.47297 * 299.99840 * 14 13 11 35 35 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9024 1.0245 0.0000 4 6 2.0485 -0.7390 -1.2160 5 8 1.8399 -0.4523 -2.3705 6 6 2.8785 -1.9076 -0.7150 7 6 2.3376 -2.1822 0.7103 8 6 2.0573 -0.7526 1.2392 9 1 2.9740 -0.2911 1.6062 10 6 0.9956 -0.7855 2.3403 11 6 1.5764 -1.4162 3.5796 12 8 2.7262 -1.8019 3.5818 13 7 0.8181 -1.5516 4.6855 14 6 1.3826 -2.1653 5.8901 15 6 0.3368 -2.1975 6.9747 16 1 -0.6483 -1.7966 6.7871 17 6 0.6392 -2.7342 8.2082 18 7 -0.2733 -2.7619 9.1548 19 14 2.3454 -3.4207 8.5353 20 1 3.2190 -2.3436 9.0663 21 1 2.2545 -4.5197 9.5297 22 1 2.9192 -3.9445 7.2697 23 1 -0.3632 0.4939 0.9012 24 1 -0.3633 0.5335 -0.8783 25 1 -0.3633 -1.0274 -0.0228 26 1 2.7320 -2.7796 -1.3523 27 1 3.9337 -1.6369 -0.6781 28 1 3.0901 -2.6810 1.3210 29 1 1.4191 -2.7678 0.6701 30 1 0.1395 -1.3697 2.0024 31 1 0.6750 0.2315 2.5663 32 1 -0.1017 -1.2435 4.6837 33 1 2.2390 -1.5817 6.2279 34 1 1.7025 -3.1825 5.6640 35 1 -0.0604 -3.1391 10.0228 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357101668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:26 Heat of formation + Delta-G solvation = -119.310124 kcal Electronic energy + Delta-G solvation = -16894.496230 eV Core-core repulsion = 14083.694113 eV Total energy + Delta-G solvation = -2810.802117 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.35327 -40.23727 -37.78924 -36.04597 -34.36879 -32.63836 -31.43298 -29.63077 -26.20423 -25.82945 -23.93434 -21.82122 -20.94098 -19.67311 -19.09297 -17.94433 -17.20350 -16.93403 -16.48101 -16.34377 -15.78760 -15.78617 -14.96746 -14.63422 -14.44802 -14.24639 -13.97774 -13.69848 -13.43373 -13.07558 -13.01232 -12.82369 -12.65407 -12.27483 -11.92695 -11.85204 -11.62819 -11.57642 -11.37118 -10.90223 -10.65022 -10.35418 -9.83331 -8.38502 -6.45145 0.91148 1.33849 1.36425 1.48356 1.85970 2.29302 2.55851 2.97360 3.14040 3.50316 3.71005 3.86136 4.14273 4.21175 4.29167 4.38841 4.53065 4.62603 4.65120 4.79611 4.85670 4.92589 4.95211 5.06538 5.07864 5.12561 5.25950 5.30260 5.36777 5.44026 5.61351 6.11604 6.48307 6.57089 6.94285 7.18545 7.52056 8.76299 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.053667 B = 0.004594 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.608323 B = 6093.660834 C = 6465.411058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 H 0.115 0.885 4 C 0.377 3.623 5 O -0.485 6.485 6 C -0.179 4.179 7 C -0.113 4.113 8 C -0.064 4.064 9 H 0.082 0.918 10 C -0.124 4.124 11 C 0.496 3.504 12 O -0.593 6.593 13 N -0.710 5.710 14 C 0.231 3.769 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.025 3.975 18 N -0.933 5.933 19 Si 0.938 3.062 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.259 1.259 23 H 0.090 0.910 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.408 0.592 33 H 0.010 0.990 34 H 0.011 0.989 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 4.514 -17.658 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 H 0.133 0.867 4 C 0.255 3.745 5 O -0.360 6.360 6 C -0.216 4.216 7 C -0.150 4.150 8 C -0.083 4.083 9 H 0.101 0.899 10 C -0.163 4.163 11 C 0.285 3.715 12 O -0.474 6.474 13 N -0.360 5.360 14 C 0.107 3.893 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.175 4.175 18 N -0.572 5.572 19 Si 0.762 3.238 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.184 1.184 23 H 0.109 0.891 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.132 0.868 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.244 0.756 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.426 4.335 -18.055 18.881 hybrid contribution 0.232 -0.331 0.819 0.913 sum 3.658 4.004 -17.236 18.069 Atomic orbital electron populations 1.21835 0.91462 1.03077 1.03728 1.22279 0.98995 1.01479 0.93343 0.86736 1.25326 0.75769 0.84659 0.88707 1.90393 1.53681 1.68749 1.23202 1.22928 1.01805 0.98757 0.98117 1.22483 1.01867 0.96770 0.93912 1.21612 0.98195 0.96128 0.92392 0.89918 1.21880 1.00076 1.03788 0.90592 1.21538 0.85888 0.78625 0.85475 1.90621 1.19721 1.52219 1.84860 1.46099 1.16471 1.61055 1.12391 1.19050 0.93938 0.92755 0.83530 1.21344 0.99117 1.41143 0.96816 0.92270 1.25616 1.00937 0.95338 0.95611 1.69990 1.35938 1.46317 1.04938 0.85852 0.80100 0.79030 0.78861 1.19079 1.20027 1.18356 0.89103 0.92386 0.91815 0.88416 0.86761 0.91136 0.90499 0.86380 0.86063 0.75620 0.97249 0.97090 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.00 71.98 0.58 -1.36 16 2 C -0.14 -2.23 3.36 -10.87 -0.04 -2.27 16 3 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 4 C 0.38 7.44 7.18 29.70 0.21 7.65 16 5 O -0.48 -12.81 17.99 -1.46 -0.03 -12.83 16 6 C -0.18 -3.04 6.72 30.86 0.21 -2.83 16 7 C -0.11 -2.23 5.80 31.92 0.19 -2.04 16 8 C -0.06 -1.21 2.39 -9.68 -0.02 -1.24 16 9 H 0.08 1.77 7.89 -2.39 -0.02 1.75 16 10 C -0.12 -2.43 3.87 29.85 0.12 -2.32 16 11 C 0.50 16.11 7.65 87.66 0.67 16.78 16 12 O -0.59 -23.73 14.79 -3.04 -0.04 -23.77 16 13 N -0.71 -26.15 5.55 -466.78 -2.59 -28.74 16 14 C 0.23 10.93 4.50 85.63 0.39 11.31 16 15 C -0.55 -29.47 9.83 25.60 0.25 -29.22 16 16 H 0.06 3.35 7.84 -2.91 -0.02 3.33 16 17 C 0.03 1.40 5.47 84.66 0.46 1.86 16 18 N -0.93 -55.12 13.96 21.45 0.30 -54.82 16 19 Si 0.94 43.36 27.47 68.60 1.88 45.25 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 22 H -0.26 -11.83 6.54 99.48 0.65 -11.18 16 23 H 0.09 0.92 6.53 -2.39 -0.02 0.91 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.84 7.67 -2.39 -0.02 0.82 16 26 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 1.73 7.37 -2.39 -0.02 1.72 16 29 H 0.08 1.41 7.96 -2.38 -0.02 1.40 16 30 H 0.12 1.84 6.85 -2.39 -0.02 1.82 16 31 H 0.12 1.79 7.35 -2.38 -0.02 1.77 16 32 H 0.41 12.96 8.32 -92.70 -0.77 12.19 16 33 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 34 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 35 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 Total: -1.00 -68.85 288.71 2.79 -66.06 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.26 Total: 12.54 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 3.01 Total: -3.67 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -2.29 Total: -83.57 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -0.07 Total: -36.61 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.25 kcal Total: -68.85 2.79 -66.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357101668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.253 kcal (2) G-P(sol) polarization free energy of solvation -68.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds