Wall clock time and date at job start Sun Mar 29 2020 21:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.00804 * 2 1 4 4 C 1.51451 * 109.98244 * 121.29164 * 2 1 3 5 5 O 1.20755 * 126.34274 * 299.02988 * 4 2 1 6 6 C 1.51848 * 107.31933 * 118.99154 * 4 2 1 7 7 C 1.54894 * 104.43303 * 23.79016 * 6 4 2 8 8 C 1.54283 * 109.98634 * 238.70455 * 2 1 3 9 9 H 1.08998 * 110.69677 * 336.16451 * 8 2 1 10 10 C 1.53006 * 110.56516 * 98.96413 * 8 2 1 11 11 C 1.50699 * 109.46866 * 180.78563 * 10 8 2 12 12 O 1.21282 * 120.00040 * 359.97438 * 11 10 8 13 13 N 1.34779 * 120.00033 * 180.02562 * 11 10 8 14 14 C 1.46500 * 120.00165 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47324 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00303 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46812 * 89.99966 * 19 17 15 21 21 H 1.48494 * 109.47357 * 210.00041 * 19 17 15 22 22 H 1.48498 * 109.47162 * 330.00203 * 19 17 15 23 23 H 1.09002 * 109.47093 * 181.29086 * 1 2 3 24 24 H 1.08992 * 109.47430 * 301.29479 * 1 2 3 25 25 H 1.09007 * 109.47008 * 61.29156 * 1 2 3 26 26 H 1.09003 * 110.44318 * 265.05455 * 6 4 2 27 27 H 1.08997 * 110.44166 * 142.52440 * 6 4 2 28 28 H 1.08995 * 110.83404 * 204.17049 * 7 6 4 29 29 H 1.09004 * 111.00419 * 80.66042 * 7 6 4 30 30 H 1.08993 * 109.46955 * 300.78782 * 10 8 2 31 31 H 1.09000 * 109.47050 * 60.78611 * 10 8 2 32 32 H 0.96996 * 119.99850 * 359.97438 * 13 11 10 33 33 H 1.08996 * 109.47197 * 300.00087 * 14 13 11 34 34 H 1.09004 * 109.46923 * 59.99390 * 14 13 11 35 35 H 0.97000 * 120.00534 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0475 -0.7393 1.2163 5 8 1.8485 -0.4456 2.3705 6 6 2.8623 -1.9187 0.7156 7 6 3.3052 -1.5047 -0.7098 8 6 2.0573 -0.7532 -1.2390 9 1 1.3124 -1.4589 -1.6067 10 6 2.4507 0.2333 -2.3404 11 6 2.9434 -0.5281 -3.5440 12 8 2.9770 -1.7403 -3.5227 13 7 3.3477 0.1380 -4.6437 14 6 3.8271 -0.6021 -5.8136 15 6 4.2146 0.3694 -6.8985 16 1 4.1134 1.4318 -6.7333 17 6 4.6982 -0.0982 -8.1020 18 7 4.8210 -1.3920 -8.3034 19 14 5.1778 1.1060 -9.4471 20 1 6.6094 1.4712 -9.2972 21 1 4.9641 0.4761 -10.7747 22 1 4.3413 2.3282 -9.3387 23 1 -0.3633 -1.0274 0.0232 24 1 -0.3634 0.5338 0.8781 25 1 -0.3633 0.4937 -0.9014 26 1 2.2469 -2.8176 0.6769 27 1 3.7319 -2.0787 1.3529 28 1 3.5168 -2.3825 -1.3203 29 1 4.1701 -0.8423 -0.6732 30 1 1.5834 0.8317 -2.6190 31 1 3.2421 0.8882 -1.9759 32 1 3.3212 1.1075 -4.6606 33 1 4.6943 -1.2005 -5.5345 34 1 3.0359 -1.2572 -6.1784 35 1 5.1616 -1.7210 -9.1499 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357101671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:30 Heat of formation + Delta-G solvation = -104.505933 kcal Electronic energy + Delta-G solvation = -16754.035418 eV Core-core repulsion = 13943.875259 eV Total energy + Delta-G solvation = -2810.160159 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24373 -38.79866 -36.59741 -34.17468 -32.37378 -31.61614 -30.66384 -27.33634 -24.92099 -24.66680 -22.48267 -20.70594 -19.57592 -19.14740 -17.18359 -16.19146 -15.91080 -15.48172 -15.10829 -14.91381 -14.50604 -14.17994 -13.87353 -13.45686 -13.25787 -12.71816 -12.54542 -12.25533 -12.05628 -11.91192 -11.58739 -11.35041 -11.11073 -10.93247 -10.89992 -10.70154 -10.59312 -10.32784 -9.52992 -9.41999 -8.97789 -8.75547 -7.89712 -6.19100 -4.26095 1.80207 3.22341 3.28717 3.30899 3.36494 3.95552 4.02305 4.31458 4.45348 4.69349 4.74523 5.03712 5.13335 5.17125 5.22502 5.28178 5.38607 5.43141 5.59271 5.66047 5.73287 5.85548 5.88354 5.91797 6.00524 6.29380 6.38341 7.28500 7.36472 7.42316 7.49434 7.64332 7.95021 8.61305 8.75848 9.08982 9.40915 10.91094 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.057973 B = 0.004142 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.866043 B = 6758.368748 C = 6958.277865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.153 4.153 3 H 0.103 0.897 4 C 0.374 3.626 5 O -0.453 6.453 6 C -0.184 4.184 7 C -0.113 4.113 8 C -0.066 4.066 9 H 0.092 0.908 10 C -0.136 4.136 11 C 0.497 3.503 12 O -0.555 6.555 13 N -0.714 5.714 14 C 0.249 3.751 15 C -0.544 4.544 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.390 0.610 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 3.574 14.209 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 H 0.121 0.879 4 C 0.250 3.750 5 O -0.326 6.326 6 C -0.221 4.221 7 C -0.151 4.151 8 C -0.085 4.085 9 H 0.111 0.889 10 C -0.176 4.176 11 C 0.282 3.718 12 O -0.435 6.435 13 N -0.362 5.362 14 C 0.128 3.872 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.122 0.878 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.222 0.778 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.669 2.715 14.656 15.947 hybrid contribution 0.353 1.096 -0.993 1.521 sum -5.316 3.811 13.662 15.147 Atomic orbital electron populations 1.21676 0.92542 1.02563 1.02674 1.22396 0.98015 1.01527 0.95232 0.87879 1.25083 0.75911 0.85133 0.88878 1.90387 1.52117 1.68133 1.21931 1.22954 1.01275 0.98877 0.99041 1.22539 0.97039 1.02017 0.93459 1.21712 0.98328 0.96397 0.92052 0.88924 1.21746 1.02478 0.98849 0.94534 1.20440 0.78605 0.88404 0.84348 1.90635 1.55839 1.14063 1.82918 1.46495 1.63821 1.10276 1.15657 1.19088 0.94900 0.92237 0.80927 1.21235 1.45009 0.93059 0.98944 0.91932 1.24950 0.95215 0.95372 0.98455 1.69970 1.44758 1.12391 1.25187 0.86421 0.78894 0.80779 0.80861 1.20457 1.20995 1.19744 0.92214 0.92165 0.91274 0.87805 0.89242 0.88624 0.91178 0.89231 0.89321 0.77752 0.95584 0.95595 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.09 37.15 0.34 -0.88 16 2 C -0.15 -1.49 3.01 -90.73 -0.27 -1.77 16 3 H 0.10 0.92 7.83 -51.93 -0.41 0.51 16 4 C 0.37 4.25 7.18 -28.10 -0.20 4.04 16 5 O -0.45 -6.47 17.99 6.00 0.11 -6.36 16 6 C -0.18 -1.85 6.72 -26.32 -0.18 -2.03 16 7 C -0.11 -1.32 5.66 -24.68 -0.14 -1.46 16 8 C -0.07 -0.75 2.03 -88.89 -0.18 -0.93 16 9 H 0.09 1.15 7.74 -51.93 -0.40 0.74 16 10 C -0.14 -1.65 5.06 -27.88 -0.14 -1.79 16 11 C 0.50 9.01 7.62 -10.99 -0.08 8.93 16 12 O -0.55 -12.10 14.54 5.56 0.08 -12.02 16 13 N -0.71 -14.25 5.55 -61.47 -0.34 -14.59 16 14 C 0.25 6.43 5.43 -5.20 -0.03 6.40 16 15 C -0.54 -14.50 9.28 -34.44 -0.32 -14.82 16 16 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 19 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.10 1.33 7.11 -51.93 -0.37 0.96 16 29 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.39 6.64 8.32 -40.82 -0.34 6.30 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 296.90 15.07 4.47 4.47 Total: -1.00 -31.78 296.90 -6.54 -38.31 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.27 Total: 2.34 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.30 Total: -2.64 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.40 Total: -39.62 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.19 Total: -18.38 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.78 -6.54 -38.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357101671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.194 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds