Wall clock time and date at job start Sun Mar 29 2020 21:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.00804 * 2 1 4 4 C 1.51451 * 109.98244 * 121.29164 * 2 1 3 5 5 O 1.20755 * 126.34274 * 299.02988 * 4 2 1 6 6 C 1.51848 * 107.31933 * 118.99154 * 4 2 1 7 7 C 1.54894 * 104.43303 * 23.79016 * 6 4 2 8 8 C 1.54283 * 109.98634 * 238.70455 * 2 1 3 9 9 H 1.08998 * 110.69677 * 336.16451 * 8 2 1 10 10 C 1.53006 * 110.56516 * 98.96413 * 8 2 1 11 11 C 1.50699 * 109.46866 * 180.78563 * 10 8 2 12 12 O 1.21282 * 120.00040 * 359.97438 * 11 10 8 13 13 N 1.34779 * 120.00033 * 180.02562 * 11 10 8 14 14 C 1.46500 * 120.00165 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47324 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00303 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46812 * 89.99966 * 19 17 15 21 21 H 1.48494 * 109.47357 * 210.00041 * 19 17 15 22 22 H 1.48498 * 109.47162 * 330.00203 * 19 17 15 23 23 H 1.09002 * 109.47093 * 181.29086 * 1 2 3 24 24 H 1.08992 * 109.47430 * 301.29479 * 1 2 3 25 25 H 1.09007 * 109.47008 * 61.29156 * 1 2 3 26 26 H 1.09003 * 110.44318 * 265.05455 * 6 4 2 27 27 H 1.08997 * 110.44166 * 142.52440 * 6 4 2 28 28 H 1.08995 * 110.83404 * 204.17049 * 7 6 4 29 29 H 1.09004 * 111.00419 * 80.66042 * 7 6 4 30 30 H 1.08993 * 109.46955 * 300.78782 * 10 8 2 31 31 H 1.09000 * 109.47050 * 60.78611 * 10 8 2 32 32 H 0.96996 * 119.99850 * 359.97438 * 13 11 10 33 33 H 1.08996 * 109.47197 * 300.00087 * 14 13 11 34 34 H 1.09004 * 109.46923 * 59.99390 * 14 13 11 35 35 H 0.97000 * 120.00534 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0475 -0.7393 1.2163 5 8 1.8485 -0.4456 2.3705 6 6 2.8623 -1.9187 0.7156 7 6 3.3052 -1.5047 -0.7098 8 6 2.0573 -0.7532 -1.2390 9 1 1.3124 -1.4589 -1.6067 10 6 2.4507 0.2333 -2.3404 11 6 2.9434 -0.5281 -3.5440 12 8 2.9770 -1.7403 -3.5227 13 7 3.3477 0.1380 -4.6437 14 6 3.8271 -0.6021 -5.8136 15 6 4.2146 0.3694 -6.8985 16 1 4.1134 1.4318 -6.7333 17 6 4.6982 -0.0982 -8.1020 18 7 4.8210 -1.3920 -8.3034 19 14 5.1778 1.1060 -9.4471 20 1 6.6094 1.4712 -9.2972 21 1 4.9641 0.4761 -10.7747 22 1 4.3413 2.3282 -9.3387 23 1 -0.3633 -1.0274 0.0232 24 1 -0.3634 0.5338 0.8781 25 1 -0.3633 0.4937 -0.9014 26 1 2.2469 -2.8176 0.6769 27 1 3.7319 -2.0787 1.3529 28 1 3.5168 -2.3825 -1.3203 29 1 4.1701 -0.8423 -0.6732 30 1 1.5834 0.8317 -2.6190 31 1 3.2421 0.8882 -1.9759 32 1 3.3212 1.1075 -4.6606 33 1 4.6943 -1.2005 -5.5345 34 1 3.0359 -1.2572 -6.1784 35 1 5.1616 -1.7210 -9.1499 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357101671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:29 Heat of formation + Delta-G solvation = -126.168697 kcal Electronic energy + Delta-G solvation = -16754.974785 eV Core-core repulsion = 13943.875259 eV Total energy + Delta-G solvation = -2811.099527 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.25939 -40.20948 -37.65889 -36.02618 -34.30435 -32.44104 -31.79039 -29.19246 -26.12297 -25.53995 -24.26522 -21.85515 -21.00522 -20.05398 -18.84584 -17.57935 -17.10365 -16.80769 -16.71666 -16.24839 -15.81933 -15.47229 -14.85041 -14.69868 -14.39363 -14.11298 -13.99440 -13.62210 -13.30639 -13.13794 -12.86919 -12.72726 -12.60141 -12.28248 -12.21495 -11.90558 -11.61310 -11.50573 -11.45509 -10.77959 -10.67387 -10.29396 -9.73362 -8.27585 -6.43710 0.91025 1.44504 1.46349 1.57538 1.90202 2.34806 2.66283 3.07598 3.14170 3.52610 3.71392 3.83187 4.18446 4.24115 4.28679 4.38397 4.52629 4.57983 4.64642 4.84013 4.91468 4.98537 5.03693 5.07295 5.17758 5.27054 5.28926 5.33325 5.45826 5.54083 5.76145 5.89105 6.48039 6.68683 7.01102 7.26396 7.60624 8.84500 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.057973 B = 0.004142 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.866043 B = 6758.368748 C = 6958.277865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.141 4.141 3 H 0.123 0.877 4 C 0.378 3.622 5 O -0.483 6.483 6 C -0.179 4.179 7 C -0.114 4.114 8 C -0.064 4.064 9 H 0.080 0.920 10 C -0.121 4.121 11 C 0.493 3.507 12 O -0.596 6.596 13 N -0.713 5.713 14 C 0.266 3.734 15 C -0.556 4.556 16 H 0.083 0.917 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.982 3.018 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.255 1.255 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.408 0.592 33 H -0.014 1.014 34 H -0.014 1.014 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.069 6.176 14.606 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 H 0.141 0.859 4 C 0.256 3.744 5 O -0.359 6.359 6 C -0.216 4.216 7 C -0.152 4.152 8 C -0.083 4.083 9 H 0.099 0.901 10 C -0.161 4.161 11 C 0.281 3.719 12 O -0.478 6.478 13 N -0.363 5.363 14 C 0.143 3.857 15 C -0.593 4.593 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.806 3.194 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.179 1.179 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.130 0.870 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.243 0.757 33 H 0.004 0.996 34 H 0.004 0.996 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.102 5.352 15.082 17.127 hybrid contribution 0.475 0.200 -1.076 1.193 sum -5.626 5.552 14.006 16.083 Atomic orbital electron populations 1.21705 0.91632 1.02709 1.03468 1.22303 0.98617 1.01915 0.93115 0.85879 1.25280 0.75223 0.85120 0.88742 1.90387 1.53424 1.68946 1.23135 1.22927 1.01677 0.98958 0.98041 1.22476 0.97634 1.01156 0.93934 1.21664 0.97836 0.96253 0.92544 0.90144 1.21762 1.04385 0.98618 0.91310 1.21566 0.77005 0.88245 0.85122 1.90628 1.57086 1.16426 1.83690 1.46254 1.64295 1.10961 1.14741 1.18493 0.92110 0.92016 0.83121 1.21652 1.44533 0.94039 0.99119 0.89852 1.26042 0.94958 0.97205 1.01368 1.70132 1.45944 1.14903 1.26055 0.85191 0.78864 0.78473 0.76910 1.19686 1.21098 1.17884 0.92493 0.91983 0.89876 0.86960 0.88401 0.91466 0.90600 0.86077 0.86372 0.75675 0.99583 0.99605 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.09 71.98 0.65 -1.41 16 2 C -0.14 -2.34 3.01 -10.87 -0.03 -2.38 16 3 H 0.12 1.65 7.83 -2.39 -0.02 1.63 16 4 C 0.38 7.87 7.18 29.71 0.21 8.08 16 5 O -0.48 -13.10 17.99 -1.43 -0.03 -13.13 16 6 C -0.18 -3.38 6.72 30.86 0.21 -3.17 16 7 C -0.11 -2.57 5.66 31.92 0.18 -2.39 16 8 C -0.06 -1.33 2.03 -9.68 -0.02 -1.35 16 9 H 0.08 1.90 7.74 -2.39 -0.02 1.88 16 10 C -0.12 -2.57 5.06 29.85 0.15 -2.42 16 11 C 0.49 17.58 7.62 87.66 0.67 18.25 16 12 O -0.60 -26.75 14.54 -3.04 -0.04 -26.80 16 13 N -0.71 -28.14 5.55 -466.79 -2.59 -30.73 16 14 C 0.27 14.18 5.43 85.63 0.46 14.64 16 15 C -0.56 -29.58 9.28 25.60 0.24 -29.34 16 16 H 0.08 3.99 7.60 -2.91 -0.02 3.97 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 19 Si 0.98 41.61 29.54 68.60 2.03 43.64 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.07 1.92 7.11 -2.39 -0.02 1.90 16 29 H 0.08 1.60 8.02 -2.39 -0.02 1.58 16 30 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.12 1.92 8.10 -2.39 -0.02 1.90 16 32 H 0.41 13.06 8.32 -92.71 -0.77 12.29 16 33 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 34 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 35 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -71.45 296.90 3.15 -68.30 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.31 Total: 14.85 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 3.19 Total: -0.82 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -2.30 Total: -86.04 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.07 Total: -39.93 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -71.45 3.15 -68.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357101671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.865 kcal (2) G-P(sol) polarization free energy of solvation -71.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds