Wall clock time and date at job start Sun Mar 29 2020 22:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 N 1.30275 * 126.27755 * 90.02517 * 3 2 1 5 5 N 1.28668 * 109.37999 * 179.97438 * 4 3 2 6 6 C 1.30284 * 109.38027 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.28325 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47231 * 165.02751 * 7 6 5 9 9 C 1.53001 * 109.47304 * 285.02895 * 7 6 5 10 10 N 1.46898 * 109.47013 * 45.02795 * 7 6 5 11 11 C 1.46894 * 111.00096 * 56.04461 * 10 7 6 12 12 C 1.46901 * 111.00042 * 179.97438 * 10 7 6 13 13 C 1.50701 * 109.47210 * 170.00064 * 12 10 7 14 14 H 1.08000 * 120.00024 * 0.02562 * 13 12 10 15 15 C 1.37874 * 119.99606 * 179.97438 * 13 12 10 16 16 N 1.31517 * 120.00601 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99584 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47217 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47052 * 119.99952 * 17 15 13 20 20 H 1.48498 * 109.46831 * 239.99887 * 17 15 13 21 21 O 1.34357 * 107.43221 * 359.76232 * 6 5 4 22 22 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 24 24 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 26 26 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 27 27 H 1.09007 * 109.47011 * 300.00142 * 9 7 6 28 28 H 1.09000 * 109.47094 * 59.99772 * 9 7 6 29 29 H 1.09001 * 109.47050 * 180.02562 * 9 7 6 30 30 H 1.09000 * 109.47040 * 59.99995 * 11 10 7 31 31 H 1.09000 * 109.47606 * 180.02562 * 11 10 7 32 32 H 1.09006 * 109.47508 * 299.99989 * 11 10 7 33 33 H 1.09006 * 109.46758 * 289.99767 * 12 10 7 34 34 H 1.08996 * 109.47120 * 49.99941 * 12 10 7 35 35 H 0.96997 * 120.00181 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2897 2.1474 1.0502 5 7 2.7005 3.3080 0.6762 6 6 2.7196 3.3611 -0.6254 7 6 3.1370 4.5417 -1.4637 8 1 3.3042 4.2172 -2.4907 9 6 2.0340 5.6017 -1.4370 10 7 4.3777 5.1124 -0.9224 11 6 5.4350 4.0957 -0.8452 12 6 4.8160 6.2679 -1.7167 13 6 5.9394 6.9725 -1.0007 14 1 6.2927 6.5991 -0.0509 15 6 6.5168 8.0933 -1.5588 16 7 6.0876 8.5471 -2.7162 17 14 7.9088 8.9672 -0.6709 18 1 8.2033 8.2624 0.6025 19 1 9.1211 8.9657 -1.5287 20 1 7.5090 10.3677 -0.3813 21 8 2.3034 2.1684 -1.0830 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3635 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.1133 5.1782 -1.8386 28 1 1.8668 5.9263 -0.4100 29 1 2.3357 6.4554 -2.0438 30 1 5.6363 3.7043 -1.8424 31 1 6.3422 4.5447 -0.4408 32 1 5.1111 3.2832 -0.1946 33 1 5.1639 5.9273 -2.6920 34 1 3.9811 6.9559 -1.8485 35 1 6.4936 9.3358 -3.1086 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358789704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:01 Heat of formation + Delta-G solvation = 39.016474 kcal Electronic energy + Delta-G solvation = -17179.076769 eV Core-core repulsion = 14407.432960 eV Total energy + Delta-G solvation = -2771.643809 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.01069 -37.46635 -35.91551 -34.51664 -32.85162 -31.20525 -29.29004 -27.42063 -24.90448 -24.59998 -24.15237 -22.08101 -21.71890 -19.77567 -17.34769 -16.94311 -16.44562 -15.44581 -15.10898 -14.82349 -14.57874 -14.13015 -13.81545 -13.02185 -12.95077 -12.34550 -12.19504 -12.10154 -11.89409 -11.81529 -11.59321 -11.57081 -11.28878 -11.12065 -10.91676 -10.70080 -10.61664 -10.39541 -9.92104 -9.36435 -9.14882 -8.46525 -7.42729 -6.07046 -4.07707 1.34645 2.36157 2.65282 3.30775 3.38448 3.44400 3.91004 4.38727 4.49129 4.61310 4.79491 4.93126 5.08220 5.23995 5.30605 5.39604 5.42543 5.51734 5.64827 5.73024 5.79369 5.87270 5.91117 6.07293 6.17507 6.24117 6.57275 6.66132 7.13804 7.19464 7.71218 7.94476 8.05812 8.41509 8.60121 8.99594 9.56461 11.03972 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.055228 B = 0.004975 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.866105 B = 5626.617440 C = 5837.823600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.022 4.022 3 C 0.141 3.859 4 N -0.289 5.289 5 N -0.262 5.262 6 C 0.185 3.815 7 C 0.176 3.824 8 H 0.060 0.940 9 C -0.141 4.141 10 N -0.520 5.520 11 C 0.036 3.964 12 C 0.190 3.810 13 C -0.506 4.506 14 H 0.066 0.934 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.283 1.283 21 O -0.231 6.231 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.013 0.987 31 H 0.084 0.916 32 H 0.040 0.960 33 H -0.005 1.005 34 H 0.043 0.957 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.630 -14.754 0.950 17.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.061 4.061 3 C -0.070 4.070 4 N -0.137 5.137 5 N -0.107 5.107 6 C -0.027 4.027 7 C 0.065 3.935 8 H 0.078 0.922 9 C -0.199 4.199 10 N -0.247 5.247 11 C -0.113 4.113 12 C 0.066 3.934 13 C -0.545 4.545 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.209 1.209 21 O -0.110 6.110 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.112 0.888 26 H 0.126 0.874 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.031 0.969 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.013 0.987 34 H 0.061 0.939 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.560 -14.081 2.534 17.208 hybrid contribution 0.887 -0.132 -1.667 1.893 sum -8.673 -14.214 0.867 16.674 Atomic orbital electron populations 1.21794 0.92925 1.03028 1.03143 1.20064 0.96940 0.83705 1.05377 1.27928 1.00891 0.97993 0.80172 1.74430 1.14472 0.98941 1.25825 1.74514 1.15503 1.11459 1.09235 1.28266 0.96621 0.85886 0.91897 1.20048 0.94684 0.86222 0.92565 0.92203 1.21914 0.95346 0.98213 1.04405 1.62189 1.00991 1.08136 1.53353 1.22269 0.96522 0.94134 0.98353 1.19931 0.96532 0.86071 0.90830 1.21157 1.16446 1.10687 1.06186 0.91561 1.24964 0.97445 0.97079 0.95012 1.69955 1.42383 1.24203 1.17307 0.86415 0.81642 0.79497 0.79753 1.19570 1.21143 1.20937 1.84762 1.64207 1.23526 1.38498 0.91592 0.92107 0.90727 0.88798 0.87362 0.92826 0.90670 0.89433 0.96852 0.89706 0.94120 0.98740 0.93904 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.02 -0.19 6.56 -27.88 -0.18 -0.37 16 3 C 0.14 2.02 7.73 -12.94 -0.10 1.92 16 4 N -0.29 -5.09 12.22 32.55 0.40 -4.70 16 5 N -0.26 -5.17 11.90 32.55 0.39 -4.78 16 6 C 0.18 3.36 5.72 -12.94 -0.07 3.28 16 7 C 0.18 3.26 2.62 -68.87 -0.18 3.08 16 8 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 9 C -0.14 -2.37 8.97 37.16 0.33 -2.03 16 10 N -0.52 -11.41 4.61 -237.73 -1.10 -12.51 16 11 C 0.04 0.74 9.07 60.06 0.54 1.28 16 12 C 0.19 4.79 4.54 -4.97 -0.02 4.76 16 13 C -0.51 -14.01 8.46 -34.44 -0.29 -14.31 16 14 H 0.07 1.85 7.12 -52.49 -0.37 1.48 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 17 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 O -0.23 -3.71 10.87 5.40 0.06 -3.65 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.53 6.20 -51.93 -0.32 1.21 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 1.84 6.76 -51.93 -0.35 1.49 16 32 H 0.04 0.80 6.74 -51.93 -0.35 0.45 16 33 H -0.01 -0.14 8.12 -51.93 -0.42 -0.56 16 34 H 0.04 1.11 5.83 -51.93 -0.30 0.81 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 295.13 15.07 4.45 4.45 Total: -1.00 -31.43 295.13 -4.85 -36.28 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -5.06 Total: -4.64 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 0.30 Total: -1.63 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.43 Total: -47.30 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: 0.06 Total: -3.65 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.43 -4.85 -36.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358789704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.295 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds