Wall clock time and date at job start Sun Mar 29 2020 22:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 N 1.30275 * 126.27755 * 90.02517 * 3 2 1 5 5 N 1.28668 * 109.37999 * 179.97438 * 4 3 2 6 6 C 1.30284 * 109.38027 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.28325 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47231 * 165.02751 * 7 6 5 9 9 C 1.53001 * 109.47304 * 285.02895 * 7 6 5 10 10 N 1.46898 * 109.47013 * 45.02795 * 7 6 5 11 11 C 1.46894 * 111.00096 * 56.04461 * 10 7 6 12 12 C 1.46901 * 111.00042 * 179.97438 * 10 7 6 13 13 C 1.50701 * 109.47210 * 170.00064 * 12 10 7 14 14 H 1.08000 * 120.00024 * 0.02562 * 13 12 10 15 15 C 1.37874 * 119.99606 * 179.97438 * 13 12 10 16 16 N 1.31517 * 120.00601 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99584 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47217 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47052 * 119.99952 * 17 15 13 20 20 H 1.48498 * 109.46831 * 239.99887 * 17 15 13 21 21 O 1.34357 * 107.43221 * 359.76232 * 6 5 4 22 22 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 24 24 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 26 26 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 27 27 H 1.09007 * 109.47011 * 300.00142 * 9 7 6 28 28 H 1.09000 * 109.47094 * 59.99772 * 9 7 6 29 29 H 1.09001 * 109.47050 * 180.02562 * 9 7 6 30 30 H 1.09000 * 109.47040 * 59.99995 * 11 10 7 31 31 H 1.09000 * 109.47606 * 180.02562 * 11 10 7 32 32 H 1.09006 * 109.47508 * 299.99989 * 11 10 7 33 33 H 1.09006 * 109.46758 * 289.99767 * 12 10 7 34 34 H 1.08996 * 109.47120 * 49.99941 * 12 10 7 35 35 H 0.96997 * 120.00181 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2897 2.1474 1.0502 5 7 2.7005 3.3080 0.6762 6 6 2.7196 3.3611 -0.6254 7 6 3.1370 4.5417 -1.4637 8 1 3.3042 4.2172 -2.4907 9 6 2.0340 5.6017 -1.4370 10 7 4.3777 5.1124 -0.9224 11 6 5.4350 4.0957 -0.8452 12 6 4.8160 6.2679 -1.7167 13 6 5.9394 6.9725 -1.0007 14 1 6.2927 6.5991 -0.0509 15 6 6.5168 8.0933 -1.5588 16 7 6.0876 8.5471 -2.7162 17 14 7.9088 8.9672 -0.6709 18 1 8.2033 8.2624 0.6025 19 1 9.1211 8.9657 -1.5287 20 1 7.5090 10.3677 -0.3813 21 8 2.3034 2.1684 -1.0830 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3635 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.1133 5.1782 -1.8386 28 1 1.8668 5.9263 -0.4100 29 1 2.3357 6.4554 -2.0438 30 1 5.6363 3.7043 -1.8424 31 1 6.3422 4.5447 -0.4408 32 1 5.1111 3.2832 -0.1946 33 1 5.1639 5.9273 -2.6920 34 1 3.9811 6.9559 -1.8485 35 1 6.4936 9.3358 -3.1086 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358789704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:01 Heat of formation + Delta-G solvation = 13.623029 kcal Electronic energy + Delta-G solvation = -17180.177911 eV Core-core repulsion = 14407.432960 eV Total energy + Delta-G solvation = -2772.744952 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.30606 -39.11982 -37.22638 -35.48060 -34.76569 -32.76565 -30.56537 -29.32295 -26.42318 -26.00668 -25.43747 -23.72126 -22.80654 -21.38751 -18.85077 -18.42484 -18.08364 -16.83314 -16.68750 -16.31007 -15.94546 -15.56865 -15.05745 -14.62832 -14.14697 -13.75375 -13.65455 -13.47187 -13.30258 -12.98819 -12.92530 -12.84988 -12.75819 -12.68609 -12.47277 -12.33572 -12.18275 -11.87142 -11.79723 -11.33250 -10.60758 -10.51570 -9.18946 -8.20265 -6.28224 0.09750 1.12050 1.33344 1.41922 1.43799 1.56701 2.41616 2.76729 3.02314 3.14265 3.48278 3.79695 3.95107 4.07629 4.15213 4.27084 4.28216 4.34128 4.41496 4.50570 4.69496 4.77387 4.81181 4.92825 4.94824 5.01419 5.14833 5.16338 5.26024 5.27887 5.63915 6.00083 6.16325 6.45760 6.84987 7.29175 7.40311 8.90804 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.055228 B = 0.004975 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.866105 B = 5626.617440 C = 5837.823600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.024 4.024 3 C 0.165 3.835 4 N -0.325 5.325 5 N -0.292 5.292 6 C 0.178 3.822 7 C 0.175 3.825 8 H 0.072 0.928 9 C -0.134 4.134 10 N -0.533 5.533 11 C 0.044 3.956 12 C 0.206 3.794 13 C -0.524 4.524 14 H 0.058 0.942 15 C 0.009 3.991 16 N -0.929 5.929 17 Si 0.965 3.035 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.278 1.278 21 O -0.230 6.230 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.106 0.894 25 H 0.121 0.879 26 H 0.127 0.873 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.022 0.978 31 H 0.068 0.932 32 H 0.047 0.953 33 H -0.026 1.026 34 H 0.033 0.967 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.087 -16.312 0.988 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.062 4.062 3 C -0.046 4.046 4 N -0.171 5.171 5 N -0.138 5.138 6 C -0.035 4.035 7 C 0.065 3.935 8 H 0.090 0.910 9 C -0.191 4.191 10 N -0.259 5.259 11 C -0.104 4.104 12 C 0.081 3.919 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.190 4.190 16 N -0.569 5.569 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.203 1.203 21 O -0.109 6.109 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.124 0.876 25 H 0.139 0.861 26 H 0.145 0.855 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.066 0.934 33 H -0.008 1.008 34 H 0.051 0.949 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.028 -15.660 2.593 18.776 hybrid contribution 0.943 0.206 -1.678 1.936 sum -9.085 -15.454 0.915 17.950 Atomic orbital electron populations 1.21801 0.91573 1.04853 1.02267 1.20550 0.97851 0.80239 1.07591 1.29154 0.97522 0.99044 0.78888 1.74375 1.16670 0.98935 1.27141 1.74445 1.16299 1.12913 1.10095 1.27907 0.97638 0.86493 0.91461 1.20055 0.93477 0.86996 0.93012 0.91017 1.21854 0.96176 0.97581 1.03539 1.62033 1.02446 1.08205 1.53267 1.22155 0.95644 0.93799 0.98841 1.19587 0.95451 0.86967 0.89900 1.21427 1.17420 1.11304 1.06104 0.92384 1.25763 0.99774 0.97731 0.95700 1.70050 1.43620 1.24732 1.18524 0.85402 0.78710 0.78287 0.78627 1.19315 1.20344 1.20333 1.84778 1.64256 1.22946 1.38956 0.92882 0.92594 0.87550 0.86108 0.85544 0.89683 0.91999 0.90478 0.95988 0.91290 0.93382 1.00820 0.94911 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.89 71.98 0.71 -0.95 16 2 C -0.02 -0.33 6.56 29.85 0.20 -0.14 16 3 C 0.17 4.41 7.73 88.34 0.68 5.09 16 4 N -0.33 -11.19 12.22 -165.50 -2.02 -13.21 16 5 N -0.29 -11.48 11.90 -165.50 -1.97 -13.45 16 6 C 0.18 6.34 5.72 88.34 0.51 6.84 16 7 C 0.17 6.45 2.62 44.17 0.12 6.56 16 8 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 9 C -0.13 -4.46 8.97 71.98 0.65 -3.81 16 10 N -0.53 -23.68 4.61 -906.05 -4.18 -27.86 16 11 C 0.04 1.83 9.07 127.69 1.16 2.99 16 12 C 0.21 10.59 4.54 85.56 0.39 10.98 16 13 C -0.52 -29.47 8.46 25.60 0.22 -29.26 16 14 H 0.06 3.29 7.12 -2.91 -0.02 3.27 16 15 C 0.01 0.50 5.46 84.65 0.46 0.96 16 16 N -0.93 -54.23 13.29 21.45 0.28 -53.95 16 17 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 O -0.23 -7.01 10.87 -3.58 -0.04 -7.05 16 22 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 2.72 6.20 -2.39 -0.01 2.71 16 30 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 3.04 6.76 -2.39 -0.02 3.02 16 32 H 0.05 1.90 6.74 -2.38 -0.02 1.88 16 33 H -0.03 -1.41 8.12 -2.38 -0.02 -1.43 16 34 H 0.03 1.75 5.83 -2.39 -0.01 1.73 16 35 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -67.89 295.13 0.26 -67.63 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: 1.07 Total: 2.39 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 5.08 Total: -0.74 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -7.89 Total: -108.48 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.04 Total: -7.05 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.89 0.26 -67.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358789704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.253 kcal (2) G-P(sol) polarization free energy of solvation -67.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds