Wall clock time and date at job start Sun Mar 29 2020 22:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46923 * 2 1 4 4 N 1.30273 * 126.28473 * 89.99898 * 3 2 1 5 5 N 1.28662 * 109.38443 * 179.73204 * 4 3 2 6 6 C 1.30273 * 109.37927 * 0.44361 * 5 4 3 7 7 C 1.50700 * 126.28477 * 179.83157 * 6 5 4 8 8 H 1.08998 * 109.47197 * 194.69010 * 7 6 5 9 9 C 1.53003 * 109.47170 * 74.68778 * 7 6 5 10 10 N 1.46903 * 109.46790 * 314.68812 * 7 6 5 11 11 C 1.46901 * 110.99788 * 303.95331 * 10 7 6 12 12 C 1.46901 * 110.99790 * 180.02562 * 10 7 6 13 13 C 1.50701 * 109.46921 * 189.99765 * 12 10 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 O 1.34359 * 126.28112 * 269.99879 * 3 2 1 22 22 H 1.09002 * 109.46825 * 300.00205 * 1 2 3 23 23 H 1.09000 * 109.47032 * 59.99838 * 1 2 3 24 24 H 1.08997 * 109.47017 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47266 * 240.00066 * 2 1 3 26 26 H 1.09003 * 109.47219 * 119.99423 * 2 1 3 27 27 H 1.09001 * 109.46845 * 180.02562 * 9 7 6 28 28 H 1.09000 * 109.46758 * 299.99625 * 9 7 6 29 29 H 1.08995 * 109.47011 * 60.00394 * 9 7 6 30 30 H 1.09001 * 109.47121 * 296.04690 * 11 10 7 31 31 H 1.09005 * 109.47342 * 56.04784 * 11 10 7 32 32 H 1.08999 * 109.46894 * 176.04703 * 11 10 7 33 33 H 1.09002 * 109.47401 * 69.99793 * 12 10 7 34 34 H 1.09001 * 109.46874 * 309.99805 * 12 10 7 35 35 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2893 2.1477 1.0501 5 7 2.7050 3.3065 0.6761 6 6 2.7184 3.3616 -0.6254 7 6 3.1358 4.5422 -1.4638 8 1 2.8016 4.3948 -2.4908 9 6 4.6600 4.6731 -1.4373 10 7 2.5297 5.7659 -0.9225 11 6 1.0682 5.6397 -0.8451 12 6 2.9150 6.9400 -1.7168 13 6 2.4843 8.1942 -1.0008 14 1 1.9757 8.1259 -0.0505 15 6 2.7406 9.4289 -1.5584 16 7 2.3652 10.5234 -0.9332 17 14 3.6210 9.5470 -3.2016 18 1 2.6221 9.5346 -4.3004 19 1 4.4006 10.8097 -3.2558 20 1 4.5401 8.3908 -3.3551 21 8 2.2974 2.1705 -1.0831 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 4.9619 5.5273 -2.0434 28 1 4.9942 4.8205 -0.4103 29 1 5.1097 3.7651 -1.8390 30 1 0.6591 5.5321 -1.8497 31 1 0.8101 4.7625 -0.2518 32 1 0.6509 6.5309 -0.3764 33 1 2.4305 6.8939 -2.6921 34 1 3.9970 6.9503 -1.8487 35 1 2.5452 11.3920 -1.3257 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358789706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:03 Heat of formation + Delta-G solvation = 44.251343 kcal Electronic energy + Delta-G solvation = -17255.360888 eV Core-core repulsion = 14483.944080 eV Total energy + Delta-G solvation = -2771.416808 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.07496 -37.64159 -35.97697 -34.55768 -32.80245 -31.35687 -29.39251 -28.04116 -24.95416 -24.62904 -24.20158 -21.97600 -21.67094 -19.77668 -17.35897 -17.19622 -16.73919 -15.58456 -15.30638 -14.77777 -14.43214 -14.19038 -13.96848 -13.18560 -12.97422 -12.58162 -12.22210 -12.20024 -12.08027 -11.95384 -11.65049 -11.62259 -11.42543 -11.25727 -11.08189 -10.76408 -10.63527 -10.32899 -9.91760 -9.39178 -9.23486 -8.60848 -7.58967 -6.07883 -4.05962 1.28171 2.29129 2.59545 3.24817 3.32344 3.33327 3.84605 4.37392 4.38997 4.48387 4.77372 4.85407 5.03661 5.12979 5.24258 5.26662 5.39815 5.42769 5.61042 5.67636 5.71590 5.78358 5.85475 5.97026 6.06013 6.09537 6.43460 6.57991 6.71550 6.85984 7.46514 7.71473 7.84474 8.53702 8.58948 9.01810 9.51987 11.05129 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.047055 B = 0.005390 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.908461 B = 5193.140886 C = 5381.063650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.022 4.022 3 C 0.143 3.857 4 N -0.288 5.288 5 N -0.258 5.258 6 C 0.182 3.818 7 C 0.174 3.826 8 H 0.061 0.939 9 C -0.143 4.143 10 N -0.511 5.511 11 C 0.036 3.964 12 C 0.161 3.839 13 C -0.510 4.510 14 H 0.083 0.917 15 C 0.070 3.930 16 N -0.897 5.897 17 Si 0.874 3.126 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.267 1.267 21 O -0.231 6.231 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.015 0.985 31 H 0.042 0.958 32 H 0.089 0.911 33 H -0.012 1.012 34 H 0.040 0.960 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.566 -19.875 -3.231 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.061 4.061 3 C -0.068 4.068 4 N -0.136 5.136 5 N -0.104 5.104 6 C -0.030 4.030 7 C 0.063 3.937 8 H 0.079 0.921 9 C -0.201 4.201 10 N -0.237 5.237 11 C -0.112 4.112 12 C 0.036 3.964 13 C -0.548 4.548 14 H 0.101 0.899 15 C -0.132 4.132 16 N -0.536 5.536 17 Si 0.701 3.299 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.191 1.191 21 O -0.110 6.110 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.005 0.995 34 H 0.058 0.942 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.247 -19.239 -1.528 19.301 hybrid contribution -0.061 -0.230 -2.892 2.901 sum -0.309 -19.469 -4.420 19.967 Atomic orbital electron populations 1.21804 0.92837 1.03076 1.03273 1.20076 0.97022 0.83613 1.05347 1.27961 1.00634 0.98063 0.80112 1.74446 1.14516 0.98814 1.25774 1.74526 1.15636 1.11056 1.09139 1.28111 0.96787 0.86167 0.91890 1.20052 0.96855 0.84147 0.92652 0.92145 1.21928 0.91321 1.02196 1.04624 1.62019 1.09033 1.00063 1.52559 1.22293 0.87831 1.02290 0.98796 1.20368 0.96730 0.88139 0.91190 1.20967 1.38247 0.87785 1.07814 0.89877 1.24873 0.95437 0.95626 0.97233 1.69886 1.47157 0.97707 1.38839 0.86889 0.80364 0.77911 0.84728 1.20332 1.21031 1.19129 1.84758 1.64106 1.23618 1.38522 0.91507 0.92074 0.90674 0.88799 0.87331 0.89886 0.90327 0.92545 0.96628 0.93959 0.89246 0.99476 0.94238 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.90 37.16 0.37 -0.75 16 2 C -0.02 -0.18 6.56 -27.88 -0.18 -0.36 16 3 C 0.14 1.99 7.73 -12.94 -0.10 1.89 16 4 N -0.29 -4.98 12.22 32.55 0.40 -4.58 16 5 N -0.26 -4.99 11.95 32.55 0.39 -4.61 16 6 C 0.18 3.19 5.64 -12.94 -0.07 3.12 16 7 C 0.17 3.05 2.62 -68.86 -0.18 2.87 16 8 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 9 C -0.14 -2.24 8.97 37.16 0.33 -1.91 16 10 N -0.51 -10.85 4.61 -237.72 -1.10 -11.95 16 11 C 0.04 0.73 9.09 60.07 0.55 1.28 16 12 C 0.16 3.77 3.60 -4.97 -0.02 3.75 16 13 C -0.51 -14.27 9.07 -34.44 -0.31 -14.58 16 14 H 0.08 2.57 7.35 -52.49 -0.39 2.18 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 17 Si 0.87 20.85 27.47 -169.99 -4.67 16.18 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 21 O -0.23 -3.57 10.87 5.38 0.06 -3.51 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.31 6.20 -51.93 -0.32 0.99 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.82 6.62 -51.93 -0.34 0.47 16 32 H 0.09 1.97 6.86 -51.93 -0.36 1.61 16 33 H -0.01 -0.29 7.55 -51.93 -0.39 -0.68 16 34 H 0.04 0.91 4.89 -51.93 -0.25 0.65 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -32.26 291.54 -4.49 -36.75 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -5.02 Total: -3.47 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 0.28 Total: -2.79 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.46 Total: -47.56 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: 0.06 Total: -3.51 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.26 -4.49 -36.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358789706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.003 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds