Wall clock time and date at job start Sun Mar 29 2020 22:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46923 * 2 1 4 4 N 1.30273 * 126.28473 * 89.99898 * 3 2 1 5 5 N 1.28662 * 109.38443 * 179.73204 * 4 3 2 6 6 C 1.30273 * 109.37927 * 0.44361 * 5 4 3 7 7 C 1.50700 * 126.28477 * 179.83157 * 6 5 4 8 8 H 1.08998 * 109.47197 * 194.69010 * 7 6 5 9 9 C 1.53003 * 109.47170 * 74.68778 * 7 6 5 10 10 N 1.46903 * 109.46790 * 314.68812 * 7 6 5 11 11 C 1.46901 * 110.99788 * 303.95331 * 10 7 6 12 12 C 1.46901 * 110.99790 * 180.02562 * 10 7 6 13 13 C 1.50701 * 109.46921 * 189.99765 * 12 10 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 O 1.34359 * 126.28112 * 269.99879 * 3 2 1 22 22 H 1.09002 * 109.46825 * 300.00205 * 1 2 3 23 23 H 1.09000 * 109.47032 * 59.99838 * 1 2 3 24 24 H 1.08997 * 109.47017 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47266 * 240.00066 * 2 1 3 26 26 H 1.09003 * 109.47219 * 119.99423 * 2 1 3 27 27 H 1.09001 * 109.46845 * 180.02562 * 9 7 6 28 28 H 1.09000 * 109.46758 * 299.99625 * 9 7 6 29 29 H 1.08995 * 109.47011 * 60.00394 * 9 7 6 30 30 H 1.09001 * 109.47121 * 296.04690 * 11 10 7 31 31 H 1.09005 * 109.47342 * 56.04784 * 11 10 7 32 32 H 1.08999 * 109.46894 * 176.04703 * 11 10 7 33 33 H 1.09002 * 109.47401 * 69.99793 * 12 10 7 34 34 H 1.09001 * 109.46874 * 309.99805 * 12 10 7 35 35 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2893 2.1477 1.0501 5 7 2.7050 3.3065 0.6761 6 6 2.7184 3.3616 -0.6254 7 6 3.1358 4.5422 -1.4638 8 1 2.8016 4.3948 -2.4908 9 6 4.6600 4.6731 -1.4373 10 7 2.5297 5.7659 -0.9225 11 6 1.0682 5.6397 -0.8451 12 6 2.9150 6.9400 -1.7168 13 6 2.4843 8.1942 -1.0008 14 1 1.9757 8.1259 -0.0505 15 6 2.7406 9.4289 -1.5584 16 7 2.3652 10.5234 -0.9332 17 14 3.6210 9.5470 -3.2016 18 1 2.6221 9.5346 -4.3004 19 1 4.4006 10.8097 -3.2558 20 1 4.5401 8.3908 -3.3551 21 8 2.2974 2.1705 -1.0831 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 4.9619 5.5273 -2.0434 28 1 4.9942 4.8205 -0.4103 29 1 5.1097 3.7651 -1.8390 30 1 0.6591 5.5321 -1.8497 31 1 0.8101 4.7625 -0.2518 32 1 0.6509 6.5309 -0.3764 33 1 2.4305 6.8939 -2.6921 34 1 3.9970 6.9503 -1.8487 35 1 2.5452 11.3920 -1.3257 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358789706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:03 Heat of formation + Delta-G solvation = 16.812734 kcal Electronic energy + Delta-G solvation = -17256.550715 eV Core-core repulsion = 14483.944080 eV Total energy + Delta-G solvation = -2772.606636 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.31022 -39.20382 -37.22985 -35.47799 -34.73270 -32.87110 -30.64586 -29.85482 -26.33892 -26.00496 -25.44464 -23.46717 -22.80502 -21.34854 -19.15556 -18.47988 -18.17495 -16.87316 -16.79352 -16.01091 -15.91962 -15.79727 -15.04042 -14.61960 -14.52510 -13.88833 -13.65452 -13.49513 -13.28555 -13.02188 -12.97903 -12.86710 -12.78048 -12.67060 -12.48157 -12.27006 -12.08361 -11.81837 -11.73521 -11.46053 -10.76306 -10.54475 -9.21820 -8.25393 -6.30122 0.09437 1.11595 1.33285 1.38812 1.41306 1.51654 2.37602 2.76214 2.93350 3.09130 3.47752 3.78153 3.92816 4.06335 4.14112 4.21302 4.26756 4.32901 4.41039 4.46470 4.66317 4.72869 4.79800 4.90477 4.91039 4.92235 5.00212 5.06753 5.17221 5.26463 5.53565 5.87178 6.12972 6.54230 6.76123 7.29401 7.32529 8.91550 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.047055 B = 0.005390 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.908461 B = 5193.140886 C = 5381.063650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.023 4.023 3 C 0.166 3.834 4 N -0.327 5.327 5 N -0.296 5.296 6 C 0.176 3.824 7 C 0.173 3.827 8 H 0.085 0.915 9 C -0.139 4.139 10 N -0.534 5.534 11 C 0.047 3.953 12 C 0.172 3.828 13 C -0.519 4.519 14 H 0.032 0.968 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.949 3.051 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.236 1.236 21 O -0.228 6.228 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.107 0.893 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.000 1.000 34 H 0.053 0.947 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 -22.598 -5.718 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.061 4.061 3 C -0.045 4.045 4 N -0.173 5.173 5 N -0.141 5.141 6 C -0.037 4.037 7 C 0.063 3.937 8 H 0.102 0.898 9 C -0.196 4.196 10 N -0.260 5.260 11 C -0.102 4.102 12 C 0.046 3.954 13 C -0.558 4.558 14 H 0.050 0.950 15 C -0.190 4.190 16 N -0.591 5.591 17 Si 0.771 3.229 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.159 1.159 21 O -0.108 6.108 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.126 0.874 25 H 0.143 0.857 26 H 0.145 0.855 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.017 0.983 34 H 0.071 0.929 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.623 -22.002 -3.991 22.370 hybrid contribution -0.433 0.491 -1.999 2.104 sum 0.190 -21.511 -5.990 22.331 Atomic orbital electron populations 1.21815 0.91985 1.04834 1.02070 1.20546 0.97479 0.80288 1.07784 1.29153 0.97345 0.99129 0.78904 1.74382 1.16778 0.98900 1.27268 1.74454 1.16776 1.12491 1.10374 1.27950 0.97361 0.86905 0.91440 1.20143 0.97712 0.82405 0.93417 0.89781 1.21922 0.90044 1.03911 1.03749 1.61810 1.09455 1.01350 1.53390 1.22114 0.87775 1.00866 0.99427 1.20131 0.97305 0.86979 0.91001 1.21199 1.37721 0.90439 1.06398 0.94953 1.25881 0.96308 0.94864 1.01917 1.70065 1.49102 0.98554 1.41363 0.85700 0.79516 0.78848 0.78822 1.19235 1.21034 1.15939 1.84774 1.64105 1.23063 1.38811 0.93219 0.92786 0.87434 0.85714 0.85466 0.89677 0.92180 0.89320 0.94964 0.93538 0.92393 0.98284 0.92891 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.90 71.98 0.71 -1.06 16 2 C -0.02 -0.30 6.56 29.85 0.20 -0.10 16 3 C 0.17 4.28 7.73 88.34 0.68 4.96 16 4 N -0.33 -11.14 12.22 -165.50 -2.02 -13.16 16 5 N -0.30 -11.44 11.95 -165.50 -1.98 -13.42 16 6 C 0.18 5.96 5.64 88.34 0.50 6.46 16 7 C 0.17 5.76 2.62 44.17 0.12 5.88 16 8 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 9 C -0.14 -4.02 8.97 71.98 0.65 -3.37 16 10 N -0.53 -22.53 4.61 -906.01 -4.18 -26.71 16 11 C 0.05 1.91 9.09 127.69 1.16 3.07 16 12 C 0.17 7.87 3.60 85.56 0.31 8.18 16 13 C -0.52 -29.85 9.07 25.60 0.23 -29.62 16 14 H 0.03 2.13 7.35 -2.91 -0.02 2.10 16 15 C 0.01 0.43 5.47 84.66 0.46 0.89 16 16 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 17 Si 0.95 42.23 27.47 68.60 1.88 44.11 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 21 O -0.23 -6.53 10.87 -3.66 -0.04 -6.57 16 22 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 2.42 6.20 -2.39 -0.01 2.40 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.83 6.62 -2.38 -0.02 1.81 16 32 H 0.06 2.69 6.86 -2.39 -0.02 2.68 16 33 H 0.00 -0.02 7.55 -2.39 -0.02 -0.04 16 34 H 0.05 2.30 4.89 -2.39 -0.01 2.29 16 35 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -73.21 291.54 0.00 -73.21 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.02 Total: 6.46 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 5.02 Total: -4.72 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -7.88 Total: -112.48 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.04 Total: -6.57 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.11 kcal Total: -73.21 0.00 -73.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358789706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.019 kcal (2) G-P(sol) polarization free energy of solvation -73.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds